Experiment: sodium fluoride 6.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26300 and AO353_26305 overlap by 4 nucleotides AO353_26305 and AO353_26310 overlap by 4 nucleotides AO353_26310 and AO353_26315 are separated by 10 nucleotides AO353_26315 and AO353_26320 are separated by 5 nucleotides
AO353_26300: AO353_26300 - hypothetical protein, at 5,777,582 to 5,778,259
_26300
AO353_26305: AO353_26305 - hypothetical protein, at 5,778,256 to 5,778,876
_26305
AO353_26310: AO353_26310 - hypothetical protein, at 5,778,873 to 5,779,460
_26310
AO353_26315: AO353_26315 - hypothetical protein, at 5,779,471 to 5,779,971
_26315
AO353_26320: AO353_26320 - hypothetical protein, at 5,779,977 to 5,780,771
_26320
Position (kb) 5778
5779
5780 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5777.931 kb on + strand, within AO353_26300 at 5777.937 kb on + strand, within AO353_26300 at 5777.937 kb on + strand, within AO353_26300 at 5777.937 kb on + strand, within AO353_26300 at 5777.938 kb on - strand, within AO353_26300 at 5777.938 kb on - strand, within AO353_26300 at 5777.938 kb on - strand, within AO353_26300 at 5777.938 kb on - strand, within AO353_26300 at 5778.026 kb on - strand, within AO353_26300 at 5778.062 kb on - strand, within AO353_26300 at 5778.408 kb on - strand, within AO353_26305 at 5778.524 kb on + strand, within AO353_26305 at 5778.840 kb on + strand at 5778.841 kb on - strand at 5778.841 kb on - strand at 5778.880 kb on + strand at 5778.880 kb on + strand at 5778.880 kb on + strand at 5778.976 kb on + strand, within AO353_26310 at 5779.004 kb on + strand, within AO353_26310 at 5779.052 kb on + strand, within AO353_26310 at 5779.052 kb on + strand, within AO353_26310 at 5779.053 kb on - strand, within AO353_26310 at 5779.053 kb on - strand, within AO353_26310 at 5779.053 kb on - strand, within AO353_26310 at 5779.053 kb on - strand, within AO353_26310 at 5779.067 kb on - strand, within AO353_26310 at 5779.165 kb on + strand, within AO353_26310 at 5779.165 kb on + strand, within AO353_26310 at 5779.166 kb on - strand, within AO353_26310 at 5779.166 kb on - strand, within AO353_26310 at 5779.285 kb on + strand, within AO353_26310 at 5779.285 kb on + strand, within AO353_26310 at 5779.472 kb on + strand at 5779.590 kb on + strand, within AO353_26315 at 5779.590 kb on + strand, within AO353_26315 at 5779.591 kb on - strand, within AO353_26315 at 5779.591 kb on - strand, within AO353_26315 at 5779.621 kb on + strand, within AO353_26315 at 5779.621 kb on + strand, within AO353_26315 at 5779.621 kb on + strand, within AO353_26315 at 5779.645 kb on + strand, within AO353_26315 at 5779.646 kb on - strand, within AO353_26315 at 5779.681 kb on + strand, within AO353_26315 at 5779.682 kb on - strand, within AO353_26315 at 5779.684 kb on + strand, within AO353_26315 at 5779.684 kb on + strand, within AO353_26315 at 5779.684 kb on + strand, within AO353_26315 at 5779.823 kb on + strand, within AO353_26315 at 5779.824 kb on - strand, within AO353_26315 at 5779.905 kb on - strand, within AO353_26315 at 5779.998 kb on + strand at 5780.030 kb on + strand at 5780.030 kb on + strand at 5780.038 kb on + strand at 5780.038 kb on + strand at 5780.038 kb on + strand at 5780.038 kb on + strand at 5780.038 kb on + strand at 5780.043 kb on - strand at 5780.233 kb on + strand, within AO353_26320 at 5780.268 kb on - strand, within AO353_26320 at 5780.377 kb on + strand, within AO353_26320 at 5780.377 kb on + strand, within AO353_26320 at 5780.378 kb on - strand, within AO353_26320 at 5780.378 kb on - strand, within AO353_26320
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 6.25 mM remove 5,777,931 + AO353_26300 0.51 -0.8 5,777,937 + AO353_26300 0.52 -1.4 5,777,937 + AO353_26300 0.52 -0.4 5,777,937 + AO353_26300 0.52 -1.4 5,777,938 - AO353_26300 0.53 +0.5 5,777,938 - AO353_26300 0.53 +0.9 5,777,938 - AO353_26300 0.53 +0.5 5,777,938 - AO353_26300 0.53 -1.1 5,778,026 - AO353_26300 0.65 +1.7 5,778,062 - AO353_26300 0.71 +0.1 5,778,408 - AO353_26305 0.24 +0.0 5,778,524 + AO353_26305 0.43 -1.3 5,778,840 + +0.0 5,778,841 - -1.8 5,778,841 - -0.2 5,778,880 + -0.6 5,778,880 + -0.4 5,778,880 + -1.1 5,778,976 + AO353_26310 0.18 -2.3 5,779,004 + AO353_26310 0.22 -1.4 5,779,052 + AO353_26310 0.30 -0.1 5,779,052 + AO353_26310 0.30 -0.3 5,779,053 - AO353_26310 0.31 +0.3 5,779,053 - AO353_26310 0.31 -1.3 5,779,053 - AO353_26310 0.31 -2.3 5,779,053 - AO353_26310 0.31 +0.7 5,779,067 - AO353_26310 0.33 -0.6 5,779,165 + AO353_26310 0.50 -1.4 5,779,165 + AO353_26310 0.50 -1.8 5,779,166 - AO353_26310 0.50 -1.0 5,779,166 - AO353_26310 0.50 -2.9 5,779,285 + AO353_26310 0.70 +0.3 5,779,285 + AO353_26310 0.70 -2.2 5,779,472 + -2.5 5,779,590 + AO353_26315 0.24 +0.9 5,779,590 + AO353_26315 0.24 +2.9 5,779,591 - AO353_26315 0.24 -1.7 5,779,591 - AO353_26315 0.24 -0.3 5,779,621 + AO353_26315 0.30 +0.9 5,779,621 + AO353_26315 0.30 +2.9 5,779,621 + AO353_26315 0.30 -1.3 5,779,645 + AO353_26315 0.35 -1.1 5,779,646 - AO353_26315 0.35 +0.4 5,779,681 + AO353_26315 0.42 +0.0 5,779,682 - AO353_26315 0.42 -2.0 5,779,684 + AO353_26315 0.43 -0.0 5,779,684 + AO353_26315 0.43 +0.3 5,779,684 + AO353_26315 0.43 +0.4 5,779,823 + AO353_26315 0.70 -1.6 5,779,824 - AO353_26315 0.70 -1.7 5,779,905 - AO353_26315 0.87 -0.4 5,779,998 + -0.3 5,780,030 + -0.1 5,780,030 + +0.2 5,780,038 + -0.4 5,780,038 + +0.5 5,780,038 + +0.9 5,780,038 + -0.9 5,780,038 + -1.8 5,780,043 - -0.5 5,780,233 + AO353_26320 0.32 -1.3 5,780,268 - AO353_26320 0.37 +0.4 5,780,377 + AO353_26320 0.50 +1.0 5,780,377 + AO353_26320 0.50 -0.9 5,780,378 - AO353_26320 0.50 +0.5 5,780,378 - AO353_26320 0.50 +0.8
Or see this region's nucleotide sequence