Experiment: sodium fluoride 6.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_24200 and AO353_24205 overlap by 4 nucleotides AO353_24205 and AO353_24210 overlap by 1 nucleotides AO353_24210 and AO353_24215 are separated by 294 nucleotides
AO353_24200: AO353_24200 - serine--tRNA ligase, at 5,321,906 to 5,323,186
_24200
AO353_24205: AO353_24205 - hypothetical protein, at 5,323,183 to 5,323,578
_24205
AO353_24210: AO353_24210 - hypothetical protein, at 5,323,578 to 5,323,802
_24210
AO353_24215: AO353_24215 - hypothetical protein, at 5,324,097 to 5,325,500
_24215
Position (kb) 5323
5324 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5322.260 kb on + strand, within AO353_24200 at 5322.260 kb on + strand, within AO353_24200 at 5322.260 kb on + strand, within AO353_24200 at 5322.260 kb on + strand, within AO353_24200 at 5322.260 kb on + strand, within AO353_24200 at 5322.261 kb on - strand, within AO353_24200 at 5322.261 kb on - strand, within AO353_24200 at 5322.261 kb on - strand, within AO353_24200 at 5322.261 kb on - strand at 5322.261 kb on - strand, within AO353_24200 at 5322.261 kb on - strand, within AO353_24200 at 5322.261 kb on - strand, within AO353_24200 at 5322.261 kb on - strand, within AO353_24200 at 5322.485 kb on + strand, within AO353_24200 at 5322.486 kb on - strand, within AO353_24200 at 5322.486 kb on - strand, within AO353_24200 at 5322.494 kb on + strand, within AO353_24200 at 5322.590 kb on + strand, within AO353_24200 at 5322.914 kb on + strand, within AO353_24200 at 5322.914 kb on + strand, within AO353_24200 at 5323.085 kb on - strand at 5323.085 kb on - strand at 5323.109 kb on + strand at 5323.109 kb on + strand at 5323.110 kb on - strand at 5323.110 kb on - strand at 5323.110 kb on - strand at 5323.146 kb on + strand at 5323.146 kb on + strand at 5323.147 kb on - strand at 5323.147 kb on - strand at 5323.157 kb on + strand at 5323.157 kb on + strand at 5323.157 kb on + strand at 5323.157 kb on + strand at 5323.157 kb on + strand at 5323.157 kb on + strand at 5323.157 kb on + strand at 5323.157 kb on + strand at 5323.157 kb on + strand at 5323.157 kb on + strand at 5323.157 kb on + strand at 5323.158 kb on - strand at 5323.158 kb on - strand at 5323.158 kb on - strand at 5323.158 kb on - strand at 5323.212 kb on + strand at 5323.212 kb on + strand at 5323.212 kb on + strand at 5323.212 kb on + strand at 5323.212 kb on + strand at 5323.213 kb on - strand at 5323.213 kb on - strand at 5323.213 kb on - strand at 5323.309 kb on + strand, within AO353_24205 at 5323.309 kb on + strand, within AO353_24205 at 5323.309 kb on + strand, within AO353_24205 at 5323.309 kb on + strand, within AO353_24205 at 5323.309 kb on + strand, within AO353_24205 at 5323.310 kb on - strand, within AO353_24205 at 5323.310 kb on - strand, within AO353_24205 at 5323.310 kb on - strand at 5323.310 kb on - strand, within AO353_24205 at 5323.310 kb on - strand, within AO353_24205 at 5323.319 kb on + strand, within AO353_24205 at 5323.319 kb on + strand, within AO353_24205 at 5323.319 kb on + strand, within AO353_24205 at 5323.320 kb on - strand, within AO353_24205 at 5323.320 kb on - strand, within AO353_24205 at 5323.320 kb on - strand, within AO353_24205 at 5323.323 kb on + strand, within AO353_24205 at 5323.323 kb on + strand, within AO353_24205 at 5323.323 kb on + strand, within AO353_24205 at 5323.323 kb on + strand, within AO353_24205 at 5323.324 kb on - strand, within AO353_24205 at 5323.324 kb on - strand, within AO353_24205 at 5323.324 kb on - strand, within AO353_24205 at 5323.324 kb on - strand, within AO353_24205 at 5323.407 kb on - strand, within AO353_24205 at 5323.455 kb on - strand, within AO353_24205 at 5323.455 kb on - strand, within AO353_24205 at 5323.587 kb on + strand at 5323.587 kb on + strand at 5323.641 kb on - strand, within AO353_24210 at 5323.759 kb on + strand, within AO353_24210 at 5323.760 kb on - strand, within AO353_24210 at 5323.760 kb on - strand, within AO353_24210 at 5323.850 kb on + strand at 5323.870 kb on - strand at 5323.897 kb on + strand at 5323.897 kb on + strand at 5323.897 kb on + strand at 5323.983 kb on + strand at 5323.983 kb on + strand at 5323.983 kb on + strand at 5323.983 kb on + strand at 5323.983 kb on + strand at 5323.983 kb on + strand at 5323.983 kb on + strand at 5323.983 kb on + strand at 5323.983 kb on + strand at 5323.984 kb on - strand at 5323.984 kb on - strand at 5323.984 kb on - strand at 5323.984 kb on - strand at 5323.991 kb on + strand at 5324.018 kb on - strand at 5324.060 kb on + strand at 5324.060 kb on + strand at 5324.060 kb on + strand at 5324.061 kb on - strand at 5324.061 kb on - strand at 5324.069 kb on + strand at 5324.069 kb on + strand at 5324.078 kb on + strand at 5324.079 kb on - strand at 5324.092 kb on + strand at 5324.093 kb on - strand at 5324.105 kb on + strand at 5324.126 kb on - strand at 5324.156 kb on - strand at 5324.220 kb on + strand at 5324.221 kb on - strand at 5324.221 kb on - strand at 5324.221 kb on - strand at 5324.264 kb on + strand, within AO353_24215 at 5324.264 kb on + strand, within AO353_24215 at 5324.264 kb on + strand, within AO353_24215 at 5324.264 kb on + strand, within AO353_24215 at 5324.265 kb on - strand, within AO353_24215 at 5324.265 kb on - strand, within AO353_24215 at 5324.289 kb on + strand, within AO353_24215 at 5324.289 kb on + strand, within AO353_24215 at 5324.289 kb on + strand, within AO353_24215 at 5324.289 kb on + strand at 5324.289 kb on + strand, within AO353_24215 at 5324.290 kb on - strand, within AO353_24215 at 5324.290 kb on - strand, within AO353_24215 at 5324.290 kb on - strand, within AO353_24215 at 5324.290 kb on - strand, within AO353_24215 at 5324.290 kb on - strand, within AO353_24215 at 5324.338 kb on + strand, within AO353_24215 at 5324.338 kb on + strand, within AO353_24215 at 5324.353 kb on + strand, within AO353_24215 at 5324.353 kb on + strand, within AO353_24215 at 5324.353 kb on + strand, within AO353_24215 at 5324.354 kb on - strand, within AO353_24215 at 5324.354 kb on - strand, within AO353_24215 at 5324.354 kb on - strand, within AO353_24215 at 5324.354 kb on - strand, within AO353_24215 at 5324.354 kb on - strand, within AO353_24215 at 5324.354 kb on - strand, within AO353_24215 at 5324.399 kb on + strand, within AO353_24215 at 5324.400 kb on - strand at 5324.400 kb on - strand, within AO353_24215 at 5324.400 kb on - strand, within AO353_24215 at 5324.441 kb on + strand, within AO353_24215 at 5324.541 kb on - strand, within AO353_24215
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 6.25 mM remove 5,322,260 + AO353_24200 0.28 +1.2 5,322,260 + AO353_24200 0.28 +0.7 5,322,260 + AO353_24200 0.28 -0.6 5,322,260 + AO353_24200 0.28 +0.0 5,322,260 + AO353_24200 0.28 +0.5 5,322,261 - AO353_24200 0.28 -1.7 5,322,261 - AO353_24200 0.28 +1.6 5,322,261 - AO353_24200 0.28 -0.6 5,322,261 - -0.7 5,322,261 - AO353_24200 0.28 -0.7 5,322,261 - AO353_24200 0.28 +0.5 5,322,261 - AO353_24200 0.28 -1.4 5,322,261 - AO353_24200 0.28 +0.3 5,322,485 + AO353_24200 0.45 +0.1 5,322,486 - AO353_24200 0.45 -0.1 5,322,486 - AO353_24200 0.45 +0.3 5,322,494 + AO353_24200 0.46 -0.4 5,322,590 + AO353_24200 0.53 +0.3 5,322,914 + AO353_24200 0.79 -0.7 5,322,914 + AO353_24200 0.79 -1.9 5,323,085 - +0.3 5,323,085 - -0.1 5,323,109 + +0.1 5,323,109 + -1.6 5,323,110 - +2.2 5,323,110 - +0.1 5,323,110 - -1.3 5,323,146 + +0.9 5,323,146 + +0.7 5,323,147 - -0.4 5,323,147 - -0.8 5,323,157 + +0.1 5,323,157 + +0.1 5,323,157 + -0.8 5,323,157 + +0.2 5,323,157 + +0.3 5,323,157 + -0.7 5,323,157 + -0.5 5,323,157 + -0.4 5,323,157 + +0.6 5,323,157 + +0.3 5,323,157 + +0.2 5,323,158 - +0.1 5,323,158 - +0.4 5,323,158 - +1.5 5,323,158 - -0.4 5,323,212 + +2.1 5,323,212 + -0.0 5,323,212 + +0.7 5,323,212 + -0.7 5,323,212 + -0.8 5,323,213 - +1.1 5,323,213 - -0.1 5,323,213 - +0.4 5,323,309 + AO353_24205 0.32 +0.0 5,323,309 + AO353_24205 0.32 +0.1 5,323,309 + AO353_24205 0.32 +1.3 5,323,309 + AO353_24205 0.32 +0.2 5,323,309 + AO353_24205 0.32 -0.5 5,323,310 - AO353_24205 0.32 -0.3 5,323,310 - AO353_24205 0.32 -1.0 5,323,310 - +0.3 5,323,310 - AO353_24205 0.32 -0.6 5,323,310 - AO353_24205 0.32 +0.6 5,323,319 + AO353_24205 0.34 -0.4 5,323,319 + AO353_24205 0.34 -0.3 5,323,319 + AO353_24205 0.34 -0.1 5,323,320 - AO353_24205 0.35 -0.5 5,323,320 - AO353_24205 0.35 -0.2 5,323,320 - AO353_24205 0.35 +0.2 5,323,323 + AO353_24205 0.35 -2.0 5,323,323 + AO353_24205 0.35 -0.8 5,323,323 + AO353_24205 0.35 +0.3 5,323,323 + AO353_24205 0.35 +0.6 5,323,324 - AO353_24205 0.36 -1.1 5,323,324 - AO353_24205 0.36 -0.5 5,323,324 - AO353_24205 0.36 +0.6 5,323,324 - AO353_24205 0.36 +0.2 5,323,407 - AO353_24205 0.57 -0.3 5,323,455 - AO353_24205 0.69 -0.1 5,323,455 - AO353_24205 0.69 -1.1 5,323,587 + -0.9 5,323,587 + -0.6 5,323,641 - AO353_24210 0.28 +1.3 5,323,759 + AO353_24210 0.80 -1.1 5,323,760 - AO353_24210 0.81 -0.5 5,323,760 - AO353_24210 0.81 +0.4 5,323,850 + +1.1 5,323,870 - +0.9 5,323,897 + +0.0 5,323,897 + +0.1 5,323,897 + -0.6 5,323,983 + +0.1 5,323,983 + +0.5 5,323,983 + +0.5 5,323,983 + -0.7 5,323,983 + +0.3 5,323,983 + -0.3 5,323,983 + +0.4 5,323,983 + -1.1 5,323,983 + -0.6 5,323,984 - -1.7 5,323,984 - -0.8 5,323,984 - -1.7 5,323,984 - +0.1 5,323,991 + +0.1 5,324,018 - -0.1 5,324,060 + +1.2 5,324,060 + -0.5 5,324,060 + +0.0 5,324,061 - +0.9 5,324,061 - +0.7 5,324,069 + -0.7 5,324,069 + +0.2 5,324,078 + -0.6 5,324,079 - -1.9 5,324,092 + -0.4 5,324,093 - -1.8 5,324,105 + -0.8 5,324,126 - +0.3 5,324,156 - +0.2 5,324,220 + -1.1 5,324,221 - -0.9 5,324,221 - +0.4 5,324,221 - +0.9 5,324,264 + AO353_24215 0.12 -1.2 5,324,264 + AO353_24215 0.12 -0.9 5,324,264 + AO353_24215 0.12 +1.6 5,324,264 + AO353_24215 0.12 -0.2 5,324,265 - AO353_24215 0.12 -1.2 5,324,265 - AO353_24215 0.12 +0.6 5,324,289 + AO353_24215 0.14 -0.3 5,324,289 + AO353_24215 0.14 -0.2 5,324,289 + AO353_24215 0.14 +0.0 5,324,289 + +1.9 5,324,289 + AO353_24215 0.14 +0.3 5,324,290 - AO353_24215 0.14 +1.1 5,324,290 - AO353_24215 0.14 +0.6 5,324,290 - AO353_24215 0.14 +0.1 5,324,290 - AO353_24215 0.14 +0.6 5,324,290 - AO353_24215 0.14 -0.3 5,324,338 + AO353_24215 0.17 -1.1 5,324,338 + AO353_24215 0.17 -1.9 5,324,353 + AO353_24215 0.18 +1.3 5,324,353 + AO353_24215 0.18 -0.4 5,324,353 + AO353_24215 0.18 +0.9 5,324,354 - AO353_24215 0.18 +0.5 5,324,354 - AO353_24215 0.18 +0.6 5,324,354 - AO353_24215 0.18 -1.3 5,324,354 - AO353_24215 0.18 -0.6 5,324,354 - AO353_24215 0.18 +0.4 5,324,354 - AO353_24215 0.18 -1.3 5,324,399 + AO353_24215 0.22 -1.7 5,324,400 - -0.4 5,324,400 - AO353_24215 0.22 -0.1 5,324,400 - AO353_24215 0.22 +0.6 5,324,441 + AO353_24215 0.25 +0.9 5,324,541 - AO353_24215 0.32 +0.3
Or see this region's nucleotide sequence