Experiment: sodium fluoride 6.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_19785 and AO353_19790 are separated by 389 nucleotides AO353_19790 and AO353_19795 are separated by 153 nucleotides
AO353_19785: AO353_19785 - chemotaxis protein, at 4,348,593 to 4,350,740
_19785
AO353_19790: AO353_19790 - sodium:proton antiporter, at 4,351,130 to 4,352,449
_19790
AO353_19795: AO353_19795 - chemotaxis protein, at 4,352,603 to 4,354,285
_19795
Position (kb) 4351
4352
4353 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4350.268 kb on + strand, within AO353_19785 at 4350.268 kb on + strand, within AO353_19785 at 4350.269 kb on - strand, within AO353_19785 at 4350.269 kb on - strand, within AO353_19785 at 4350.505 kb on + strand, within AO353_19785 at 4350.753 kb on - strand at 4350.764 kb on - strand at 4350.764 kb on - strand at 4350.764 kb on - strand at 4350.835 kb on - strand at 4350.835 kb on - strand at 4350.882 kb on + strand at 4350.883 kb on - strand at 4350.883 kb on - strand at 4350.883 kb on - strand at 4350.900 kb on + strand at 4350.900 kb on + strand at 4350.900 kb on + strand at 4350.901 kb on - strand at 4350.969 kb on + strand at 4350.969 kb on + strand at 4350.969 kb on + strand at 4350.969 kb on + strand at 4350.969 kb on + strand at 4350.970 kb on - strand at 4351.028 kb on + strand at 4351.031 kb on + strand at 4351.032 kb on - strand at 4351.032 kb on - strand at 4351.032 kb on - strand at 4351.032 kb on - strand at 4351.032 kb on - strand at 4351.032 kb on - strand at 4351.032 kb on - strand at 4351.032 kb on - strand at 4351.135 kb on + strand at 4351.135 kb on + strand at 4351.136 kb on - strand at 4351.143 kb on + strand at 4351.143 kb on + strand at 4351.143 kb on + strand at 4351.144 kb on - strand at 4351.144 kb on - strand at 4351.144 kb on - strand at 4351.144 kb on - strand at 4351.144 kb on - strand at 4351.144 kb on - strand at 4351.144 kb on - strand at 4351.144 kb on - strand at 4351.144 kb on - strand at 4351.314 kb on - strand, within AO353_19790 at 4351.532 kb on + strand, within AO353_19790 at 4351.532 kb on + strand, within AO353_19790 at 4351.532 kb on + strand, within AO353_19790 at 4351.532 kb on + strand, within AO353_19790 at 4351.532 kb on + strand, within AO353_19790 at 4351.532 kb on + strand, within AO353_19790 at 4351.532 kb on + strand, within AO353_19790 at 4351.532 kb on + strand, within AO353_19790 at 4351.533 kb on - strand, within AO353_19790 at 4351.533 kb on - strand, within AO353_19790 at 4351.533 kb on - strand, within AO353_19790 at 4351.533 kb on - strand, within AO353_19790 at 4351.533 kb on - strand, within AO353_19790 at 4351.533 kb on - strand, within AO353_19790 at 4351.533 kb on - strand, within AO353_19790 at 4351.533 kb on - strand, within AO353_19790 at 4351.533 kb on - strand, within AO353_19790 at 4351.533 kb on - strand, within AO353_19790 at 4351.533 kb on - strand, within AO353_19790 at 4351.533 kb on - strand, within AO353_19790 at 4351.536 kb on + strand, within AO353_19790 at 4351.536 kb on + strand, within AO353_19790 at 4351.536 kb on + strand, within AO353_19790 at 4351.536 kb on + strand, within AO353_19790 at 4351.536 kb on + strand, within AO353_19790 at 4351.536 kb on + strand, within AO353_19790 at 4351.536 kb on + strand, within AO353_19790 at 4351.537 kb on - strand, within AO353_19790 at 4351.537 kb on - strand, within AO353_19790 at 4351.537 kb on - strand, within AO353_19790 at 4351.537 kb on - strand, within AO353_19790 at 4351.537 kb on - strand, within AO353_19790 at 4351.537 kb on - strand, within AO353_19790 at 4351.537 kb on - strand, within AO353_19790 at 4351.537 kb on - strand, within AO353_19790 at 4351.604 kb on + strand, within AO353_19790 at 4351.604 kb on + strand, within AO353_19790 at 4351.604 kb on + strand, within AO353_19790 at 4351.604 kb on + strand, within AO353_19790 at 4351.604 kb on + strand, within AO353_19790 at 4351.604 kb on + strand, within AO353_19790 at 4351.604 kb on + strand, within AO353_19790 at 4351.604 kb on + strand, within AO353_19790 at 4351.604 kb on + strand, within AO353_19790 at 4351.605 kb on - strand, within AO353_19790 at 4351.605 kb on - strand, within AO353_19790 at 4351.605 kb on - strand, within AO353_19790 at 4351.605 kb on - strand, within AO353_19790 at 4351.669 kb on + strand, within AO353_19790 at 4351.669 kb on + strand, within AO353_19790 at 4351.670 kb on - strand, within AO353_19790 at 4351.670 kb on - strand, within AO353_19790 at 4351.670 kb on - strand, within AO353_19790 at 4351.771 kb on + strand, within AO353_19790 at 4351.771 kb on + strand, within AO353_19790 at 4351.771 kb on + strand, within AO353_19790 at 4351.772 kb on - strand, within AO353_19790 at 4351.784 kb on + strand, within AO353_19790 at 4351.784 kb on + strand, within AO353_19790 at 4351.784 kb on + strand, within AO353_19790 at 4351.829 kb on + strand, within AO353_19790 at 4351.829 kb on + strand, within AO353_19790 at 4351.829 kb on + strand, within AO353_19790 at 4351.829 kb on + strand, within AO353_19790 at 4351.829 kb on + strand, within AO353_19790 at 4351.829 kb on + strand, within AO353_19790 at 4351.830 kb on - strand, within AO353_19790 at 4351.957 kb on - strand, within AO353_19790 at 4351.957 kb on - strand, within AO353_19790 at 4352.133 kb on + strand, within AO353_19790 at 4352.134 kb on - strand, within AO353_19790 at 4352.134 kb on - strand at 4352.134 kb on - strand, within AO353_19790 at 4352.134 kb on - strand, within AO353_19790 at 4352.134 kb on - strand, within AO353_19790 at 4352.344 kb on + strand at 4352.365 kb on + strand at 4352.365 kb on + strand at 4352.365 kb on + strand at 4352.365 kb on + strand at 4352.365 kb on + strand at 4352.365 kb on + strand at 4352.366 kb on - strand at 4352.366 kb on - strand at 4352.366 kb on - strand at 4352.366 kb on - strand at 4352.366 kb on - strand at 4352.399 kb on + strand at 4352.399 kb on + strand at 4352.399 kb on + strand at 4352.399 kb on + strand at 4352.399 kb on + strand at 4352.399 kb on + strand at 4352.400 kb on - strand at 4352.475 kb on + strand at 4352.475 kb on + strand at 4352.475 kb on + strand at 4352.475 kb on + strand at 4352.475 kb on + strand at 4352.483 kb on + strand at 4352.483 kb on + strand at 4352.483 kb on + strand at 4352.483 kb on + strand at 4352.483 kb on + strand at 4352.483 kb on + strand at 4352.483 kb on + strand at 4352.483 kb on + strand at 4352.484 kb on - strand at 4352.484 kb on - strand at 4352.484 kb on - strand at 4352.484 kb on - strand at 4352.484 kb on - strand at 4352.484 kb on - strand at 4352.484 kb on - strand at 4352.484 kb on - strand at 4352.484 kb on - strand at 4352.484 kb on - strand at 4352.484 kb on - strand at 4352.537 kb on + strand at 4352.569 kb on + strand at 4352.581 kb on + strand at 4352.581 kb on + strand at 4352.581 kb on + strand at 4352.581 kb on + strand at 4352.584 kb on + strand at 4352.774 kb on + strand, within AO353_19795 at 4352.775 kb on - strand, within AO353_19795 at 4352.775 kb on - strand, within AO353_19795 at 4352.775 kb on - strand, within AO353_19795 at 4352.775 kb on - strand, within AO353_19795 at 4352.775 kb on - strand, within AO353_19795 at 4352.775 kb on - strand, within AO353_19795 at 4352.775 kb on - strand, within AO353_19795 at 4352.810 kb on + strand, within AO353_19795 at 4352.810 kb on + strand, within AO353_19795 at 4352.810 kb on + strand, within AO353_19795 at 4352.811 kb on - strand, within AO353_19795 at 4352.811 kb on - strand, within AO353_19795 at 4352.879 kb on + strand, within AO353_19795 at 4352.880 kb on - strand, within AO353_19795 at 4352.894 kb on + strand, within AO353_19795 at 4352.895 kb on - strand, within AO353_19795 at 4352.895 kb on - strand, within AO353_19795 at 4352.917 kb on + strand, within AO353_19795 at 4352.917 kb on + strand, within AO353_19795 at 4352.918 kb on - strand, within AO353_19795 at 4352.996 kb on + strand, within AO353_19795 at 4352.996 kb on + strand, within AO353_19795 at 4352.996 kb on + strand at 4352.996 kb on + strand, within AO353_19795 at 4352.996 kb on + strand, within AO353_19795 at 4352.996 kb on + strand, within AO353_19795 at 4352.997 kb on - strand, within AO353_19795 at 4353.041 kb on + strand, within AO353_19795 at 4353.041 kb on + strand, within AO353_19795 at 4353.041 kb on + strand, within AO353_19795 at 4353.042 kb on - strand, within AO353_19795 at 4353.050 kb on + strand, within AO353_19795 at 4353.050 kb on + strand, within AO353_19795 at 4353.050 kb on + strand, within AO353_19795 at 4353.051 kb on - strand, within AO353_19795 at 4353.051 kb on - strand, within AO353_19795 at 4353.051 kb on - strand, within AO353_19795 at 4353.051 kb on - strand, within AO353_19795 at 4353.051 kb on - strand, within AO353_19795 at 4353.081 kb on + strand, within AO353_19795 at 4353.082 kb on - strand, within AO353_19795 at 4353.082 kb on - strand, within AO353_19795 at 4353.082 kb on - strand, within AO353_19795 at 4353.082 kb on - strand, within AO353_19795 at 4353.102 kb on - strand, within AO353_19795 at 4353.110 kb on + strand, within AO353_19795 at 4353.110 kb on + strand, within AO353_19795 at 4353.110 kb on + strand, within AO353_19795 at 4353.111 kb on - strand, within AO353_19795 at 4353.139 kb on + strand, within AO353_19795 at 4353.139 kb on + strand, within AO353_19795 at 4353.139 kb on + strand, within AO353_19795 at 4353.140 kb on - strand, within AO353_19795 at 4353.140 kb on - strand, within AO353_19795 at 4353.289 kb on + strand, within AO353_19795 at 4353.290 kb on - strand, within AO353_19795 at 4353.376 kb on + strand, within AO353_19795 at 4353.376 kb on + strand, within AO353_19795 at 4353.377 kb on - strand, within AO353_19795 at 4353.377 kb on - strand, within AO353_19795
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 6.25 mM remove 4,350,268 + AO353_19785 0.78 -0.7 4,350,268 + AO353_19785 0.78 +0.5 4,350,269 - AO353_19785 0.78 +0.3 4,350,269 - AO353_19785 0.78 -1.4 4,350,505 + AO353_19785 0.89 -1.2 4,350,753 - -0.8 4,350,764 - -0.1 4,350,764 - -1.8 4,350,764 - +1.2 4,350,835 - -0.1 4,350,835 - +0.4 4,350,882 + -0.8 4,350,883 - -1.1 4,350,883 - -0.8 4,350,883 - -0.8 4,350,900 + -1.0 4,350,900 + -0.9 4,350,900 + +0.3 4,350,901 - -2.0 4,350,969 + -0.1 4,350,969 + -0.5 4,350,969 + -0.1 4,350,969 + +0.8 4,350,969 + +1.0 4,350,970 - -2.5 4,351,028 + +1.4 4,351,031 + -0.3 4,351,032 - -1.3 4,351,032 - -0.1 4,351,032 - -1.1 4,351,032 - -0.5 4,351,032 - -0.7 4,351,032 - -1.5 4,351,032 - -0.6 4,351,032 - +0.1 4,351,135 + -0.8 4,351,135 + +1.0 4,351,136 - +0.2 4,351,143 + -2.1 4,351,143 + +0.5 4,351,143 + -1.5 4,351,144 - -0.4 4,351,144 - -0.9 4,351,144 - -0.4 4,351,144 - -1.8 4,351,144 - -0.6 4,351,144 - -0.4 4,351,144 - -0.9 4,351,144 - -0.9 4,351,144 - -0.5 4,351,314 - AO353_19790 0.14 +1.2 4,351,532 + AO353_19790 0.30 -0.3 4,351,532 + AO353_19790 0.30 +0.0 4,351,532 + AO353_19790 0.30 -1.5 4,351,532 + AO353_19790 0.30 +0.8 4,351,532 + AO353_19790 0.30 -0.9 4,351,532 + AO353_19790 0.30 -0.3 4,351,532 + AO353_19790 0.30 -0.9 4,351,532 + AO353_19790 0.30 -0.6 4,351,533 - AO353_19790 0.31 +0.1 4,351,533 - AO353_19790 0.31 -0.3 4,351,533 - AO353_19790 0.31 -2.0 4,351,533 - AO353_19790 0.31 -1.8 4,351,533 - AO353_19790 0.31 -1.3 4,351,533 - AO353_19790 0.31 -0.2 4,351,533 - AO353_19790 0.31 +1.4 4,351,533 - AO353_19790 0.31 -1.3 4,351,533 - AO353_19790 0.31 +0.2 4,351,533 - AO353_19790 0.31 -1.3 4,351,533 - AO353_19790 0.31 -1.4 4,351,533 - AO353_19790 0.31 -0.8 4,351,536 + AO353_19790 0.31 -1.4 4,351,536 + AO353_19790 0.31 +0.2 4,351,536 + AO353_19790 0.31 -0.2 4,351,536 + AO353_19790 0.31 +0.6 4,351,536 + AO353_19790 0.31 -1.6 4,351,536 + AO353_19790 0.31 -0.8 4,351,536 + AO353_19790 0.31 -1.7 4,351,537 - AO353_19790 0.31 -0.8 4,351,537 - AO353_19790 0.31 -0.3 4,351,537 - AO353_19790 0.31 +0.5 4,351,537 - AO353_19790 0.31 -1.1 4,351,537 - AO353_19790 0.31 +0.6 4,351,537 - AO353_19790 0.31 +0.0 4,351,537 - AO353_19790 0.31 -0.6 4,351,537 - AO353_19790 0.31 -0.4 4,351,604 + AO353_19790 0.36 -0.4 4,351,604 + AO353_19790 0.36 -0.4 4,351,604 + AO353_19790 0.36 -0.9 4,351,604 + AO353_19790 0.36 +0.9 4,351,604 + AO353_19790 0.36 -0.2 4,351,604 + AO353_19790 0.36 -0.5 4,351,604 + AO353_19790 0.36 -1.1 4,351,604 + AO353_19790 0.36 +0.6 4,351,604 + AO353_19790 0.36 +0.0 4,351,605 - AO353_19790 0.36 +0.7 4,351,605 - AO353_19790 0.36 -2.1 4,351,605 - AO353_19790 0.36 -0.5 4,351,605 - AO353_19790 0.36 -2.5 4,351,669 + AO353_19790 0.41 -0.8 4,351,669 + AO353_19790 0.41 -0.1 4,351,670 - AO353_19790 0.41 +0.2 4,351,670 - AO353_19790 0.41 -0.6 4,351,670 - AO353_19790 0.41 -1.0 4,351,771 + AO353_19790 0.49 +0.4 4,351,771 + AO353_19790 0.49 -0.6 4,351,771 + AO353_19790 0.49 -0.6 4,351,772 - AO353_19790 0.49 -0.9 4,351,784 + AO353_19790 0.50 +0.3 4,351,784 + AO353_19790 0.50 -1.6 4,351,784 + AO353_19790 0.50 -0.8 4,351,829 + AO353_19790 0.53 -0.2 4,351,829 + AO353_19790 0.53 -0.3 4,351,829 + AO353_19790 0.53 +0.2 4,351,829 + AO353_19790 0.53 -0.3 4,351,829 + AO353_19790 0.53 -0.4 4,351,829 + AO353_19790 0.53 -1.4 4,351,830 - AO353_19790 0.53 -1.0 4,351,957 - AO353_19790 0.63 -0.9 4,351,957 - AO353_19790 0.63 -1.5 4,352,133 + AO353_19790 0.76 -0.3 4,352,134 - AO353_19790 0.76 -0.8 4,352,134 - -0.6 4,352,134 - AO353_19790 0.76 +0.1 4,352,134 - AO353_19790 0.76 +0.7 4,352,134 - AO353_19790 0.76 -0.4 4,352,344 + -0.7 4,352,365 + +0.6 4,352,365 + -0.9 4,352,365 + -1.1 4,352,365 + -1.1 4,352,365 + -0.4 4,352,365 + +0.0 4,352,366 - -1.1 4,352,366 - -0.4 4,352,366 - +0.0 4,352,366 - -2.1 4,352,366 - +0.9 4,352,399 + -0.3 4,352,399 + -0.6 4,352,399 + -0.1 4,352,399 + -0.6 4,352,399 + -1.4 4,352,399 + -0.6 4,352,400 - -0.4 4,352,475 + -0.5 4,352,475 + -0.1 4,352,475 + +0.7 4,352,475 + +0.5 4,352,475 + +0.2 4,352,483 + -0.6 4,352,483 + +0.3 4,352,483 + +0.6 4,352,483 + +1.0 4,352,483 + -1.1 4,352,483 + -0.6 4,352,483 + +0.2 4,352,483 + +0.0 4,352,484 - -2.8 4,352,484 - -0.1 4,352,484 - -0.4 4,352,484 - -0.5 4,352,484 - +0.6 4,352,484 - +0.4 4,352,484 - +0.6 4,352,484 - +0.3 4,352,484 - +0.0 4,352,484 - +0.7 4,352,484 - +1.0 4,352,537 + -0.5 4,352,569 + +0.1 4,352,581 + -0.0 4,352,581 + +0.0 4,352,581 + -0.2 4,352,581 + -0.3 4,352,584 + -1.2 4,352,774 + AO353_19795 0.10 +0.1 4,352,775 - AO353_19795 0.10 -0.6 4,352,775 - AO353_19795 0.10 +1.2 4,352,775 - AO353_19795 0.10 +0.5 4,352,775 - AO353_19795 0.10 +1.5 4,352,775 - AO353_19795 0.10 +0.0 4,352,775 - AO353_19795 0.10 -0.3 4,352,775 - AO353_19795 0.10 -0.5 4,352,810 + AO353_19795 0.12 -1.3 4,352,810 + AO353_19795 0.12 -1.0 4,352,810 + AO353_19795 0.12 -0.5 4,352,811 - AO353_19795 0.12 -0.2 4,352,811 - AO353_19795 0.12 +0.4 4,352,879 + AO353_19795 0.16 -0.1 4,352,880 - AO353_19795 0.16 +0.6 4,352,894 + AO353_19795 0.17 -0.7 4,352,895 - AO353_19795 0.17 -0.1 4,352,895 - AO353_19795 0.17 +1.4 4,352,917 + AO353_19795 0.19 -0.5 4,352,917 + AO353_19795 0.19 -2.4 4,352,918 - AO353_19795 0.19 +0.0 4,352,996 + AO353_19795 0.23 -0.3 4,352,996 + AO353_19795 0.23 +0.4 4,352,996 + +0.2 4,352,996 + AO353_19795 0.23 -0.4 4,352,996 + AO353_19795 0.23 -0.6 4,352,996 + AO353_19795 0.23 -0.8 4,352,997 - AO353_19795 0.23 +0.3 4,353,041 + AO353_19795 0.26 -1.8 4,353,041 + AO353_19795 0.26 -0.5 4,353,041 + AO353_19795 0.26 -0.5 4,353,042 - AO353_19795 0.26 -0.3 4,353,050 + AO353_19795 0.27 -0.2 4,353,050 + AO353_19795 0.27 +0.1 4,353,050 + AO353_19795 0.27 -0.6 4,353,051 - AO353_19795 0.27 -0.0 4,353,051 - AO353_19795 0.27 +1.2 4,353,051 - AO353_19795 0.27 +0.4 4,353,051 - AO353_19795 0.27 -0.4 4,353,051 - AO353_19795 0.27 -1.1 4,353,081 + AO353_19795 0.28 -2.3 4,353,082 - AO353_19795 0.28 +0.5 4,353,082 - AO353_19795 0.28 -1.0 4,353,082 - AO353_19795 0.28 +0.8 4,353,082 - AO353_19795 0.28 +1.6 4,353,102 - AO353_19795 0.30 +0.3 4,353,110 + AO353_19795 0.30 +0.8 4,353,110 + AO353_19795 0.30 -0.2 4,353,110 + AO353_19795 0.30 -1.4 4,353,111 - AO353_19795 0.30 -1.4 4,353,139 + AO353_19795 0.32 -0.2 4,353,139 + AO353_19795 0.32 +0.8 4,353,139 + AO353_19795 0.32 -0.7 4,353,140 - AO353_19795 0.32 -0.6 4,353,140 - AO353_19795 0.32 +0.2 4,353,289 + AO353_19795 0.41 +0.8 4,353,290 - AO353_19795 0.41 -0.1 4,353,376 + AO353_19795 0.46 -2.6 4,353,376 + AO353_19795 0.46 -0.5 4,353,377 - AO353_19795 0.46 +0.2 4,353,377 - AO353_19795 0.46 -0.9
Or see this region's nucleotide sequence