Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_13730

Experiment: sodium fluoride 6.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_13725 and AO353_13730 overlap by 4 nucleotidesAO353_13730 and AO353_13735 are separated by 226 nucleotides AO353_13725: AO353_13725 - type VI secretion protein, at 3,050,354 to 3,051,736 _13725 AO353_13730: AO353_13730 - hypothetical protein, at 3,051,733 to 3,052,518 _13730 AO353_13735: AO353_13735 - MATE family efflux transporter, at 3,052,745 to 3,054,085 _13735 Position (kb) 3051 3052 3053Strain fitness (log2 ratio) -2 -1 0 1 2at 3050.733 kb on + strand, within AO353_13725at 3050.733 kb on + strand, within AO353_13725at 3050.733 kb on + strand, within AO353_13725at 3050.733 kb on + strand, within AO353_13725at 3050.733 kb on + strand, within AO353_13725at 3050.733 kb on + strand, within AO353_13725at 3050.733 kb on + strand, within AO353_13725at 3050.799 kb on - strand, within AO353_13725at 3050.885 kb on + strand, within AO353_13725at 3050.886 kb on - strand, within AO353_13725at 3050.886 kb on - strand, within AO353_13725at 3051.167 kb on + strand, within AO353_13725at 3051.168 kb on - strand, within AO353_13725at 3051.332 kb on + strand, within AO353_13725at 3051.332 kb on + strand, within AO353_13725at 3051.480 kb on + strand, within AO353_13725at 3051.480 kb on + strand, within AO353_13725at 3051.480 kb on + strand, within AO353_13725at 3051.481 kb on - strand, within AO353_13725at 3051.773 kb on + strandat 3051.773 kb on + strandat 3051.773 kb on + strandat 3051.774 kb on - strandat 3051.774 kb on - strandat 3051.774 kb on - strandat 3051.774 kb on - strandat 3051.824 kb on + strand, within AO353_13730at 3051.824 kb on + strand, within AO353_13730at 3051.824 kb on + strand, within AO353_13730at 3051.824 kb on + strand, within AO353_13730at 3051.825 kb on - strand, within AO353_13730at 3051.825 kb on - strand, within AO353_13730at 3051.832 kb on + strand, within AO353_13730at 3051.832 kb on + strand, within AO353_13730at 3052.008 kb on + strand, within AO353_13730at 3052.008 kb on + strand, within AO353_13730at 3052.008 kb on + strand, within AO353_13730at 3052.008 kb on + strand, within AO353_13730at 3052.008 kb on + strand, within AO353_13730at 3052.008 kb on + strand, within AO353_13730at 3052.008 kb on + strand, within AO353_13730at 3052.008 kb on + strand, within AO353_13730at 3052.008 kb on + strand, within AO353_13730at 3052.008 kb on + strand, within AO353_13730at 3052.008 kb on + strand, within AO353_13730at 3052.008 kb on + strand, within AO353_13730at 3052.008 kb on + strand, within AO353_13730at 3052.008 kb on + strand, within AO353_13730at 3052.009 kb on - strand, within AO353_13730at 3052.009 kb on - strand, within AO353_13730at 3052.009 kb on - strand, within AO353_13730at 3052.009 kb on - strand, within AO353_13730at 3052.036 kb on + strand, within AO353_13730at 3052.036 kb on + strand, within AO353_13730at 3052.036 kb on + strand, within AO353_13730at 3052.036 kb on + strand, within AO353_13730at 3052.037 kb on - strand, within AO353_13730at 3052.037 kb on - strand, within AO353_13730at 3052.037 kb on - strand, within AO353_13730at 3052.037 kb on - strand, within AO353_13730at 3052.037 kb on - strand, within AO353_13730at 3052.037 kb on - strand, within AO353_13730at 3052.037 kb on - strand, within AO353_13730at 3052.037 kb on - strand, within AO353_13730at 3052.037 kb on - strand, within AO353_13730at 3052.037 kb on - strand, within AO353_13730at 3052.037 kb on - strand, within AO353_13730at 3052.037 kb on - strand, within AO353_13730at 3052.037 kb on - strand, within AO353_13730at 3052.054 kb on + strand, within AO353_13730at 3052.054 kb on + strand, within AO353_13730at 3052.054 kb on + strand, within AO353_13730at 3052.055 kb on - strand, within AO353_13730at 3052.055 kb on - strand, within AO353_13730at 3052.055 kb on - strand, within AO353_13730at 3052.057 kb on + strand, within AO353_13730at 3052.057 kb on + strand, within AO353_13730at 3052.057 kb on + strand, within AO353_13730at 3052.057 kb on + strand, within AO353_13730at 3052.057 kb on + strand, within AO353_13730at 3052.057 kb on + strand, within AO353_13730at 3052.057 kb on + strand, within AO353_13730at 3052.057 kb on + strand, within AO353_13730at 3052.057 kb on + strand, within AO353_13730at 3052.057 kb on + strand, within AO353_13730at 3052.057 kb on + strand, within AO353_13730at 3052.057 kb on + strand, within AO353_13730at 3052.057 kb on + strand, within AO353_13730at 3052.058 kb on - strand, within AO353_13730at 3052.058 kb on - strand, within AO353_13730at 3052.058 kb on - strand, within AO353_13730at 3052.058 kb on - strand, within AO353_13730at 3052.058 kb on - strand, within AO353_13730at 3052.058 kb on - strand, within AO353_13730at 3052.058 kb on - strand, within AO353_13730at 3052.058 kb on - strand, within AO353_13730at 3052.058 kb on - strand, within AO353_13730at 3052.058 kb on - strand, within AO353_13730at 3052.058 kb on - strand, within AO353_13730at 3052.058 kb on - strand, within AO353_13730at 3052.058 kb on - strand, within AO353_13730at 3052.078 kb on + strand, within AO353_13730at 3052.135 kb on - strand, within AO353_13730at 3052.141 kb on + strand, within AO353_13730at 3052.141 kb on + strand, within AO353_13730at 3052.142 kb on - strand, within AO353_13730at 3052.142 kb on - strand, within AO353_13730at 3052.142 kb on - strand, within AO353_13730at 3052.412 kb on + strand, within AO353_13730at 3052.413 kb on - strand, within AO353_13730at 3052.507 kb on + strandat 3052.508 kb on - strandat 3052.565 kb on + strandat 3052.566 kb on - strandat 3052.566 kb on - strandat 3052.566 kb on - strandat 3052.626 kb on + strandat 3052.626 kb on + strandat 3052.637 kb on + strandat 3052.720 kb on + strandat 3052.720 kb on + strandat 3052.841 kb on + strandat 3052.842 kb on - strandat 3052.842 kb on - strandat 3052.889 kb on + strand, within AO353_13735at 3052.889 kb on + strand, within AO353_13735at 3052.889 kb on + strand, within AO353_13735at 3052.889 kb on + strand, within AO353_13735at 3052.890 kb on - strand, within AO353_13735at 3052.890 kb on - strand, within AO353_13735at 3052.890 kb on - strand, within AO353_13735at 3052.890 kb on - strand, within AO353_13735at 3052.890 kb on - strand, within AO353_13735at 3052.965 kb on + strand, within AO353_13735at 3052.965 kb on + strand, within AO353_13735at 3052.965 kb on + strand, within AO353_13735at 3052.965 kb on + strand, within AO353_13735at 3052.965 kb on + strand, within AO353_13735at 3052.965 kb on + strand, within AO353_13735at 3052.965 kb on + strand, within AO353_13735at 3052.965 kb on + strand, within AO353_13735at 3052.965 kb on + strand, within AO353_13735at 3052.966 kb on - strand, within AO353_13735at 3053.001 kb on + strand, within AO353_13735at 3053.001 kb on + strand, within AO353_13735at 3053.010 kb on + strand, within AO353_13735at 3053.010 kb on + strand, within AO353_13735at 3053.010 kb on + strand, within AO353_13735at 3053.011 kb on - strand, within AO353_13735at 3053.057 kb on + strand, within AO353_13735at 3053.057 kb on + strand, within AO353_13735at 3053.058 kb on - strand, within AO353_13735at 3053.252 kb on + strand, within AO353_13735at 3053.252 kb on + strand, within AO353_13735at 3053.253 kb on - strand, within AO353_13735at 3053.253 kb on - strand, within AO353_13735at 3053.253 kb on - strand, within AO353_13735at 3053.411 kb on - strand, within AO353_13735at 3053.438 kb on - strand, within AO353_13735

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 6.25 mM
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3,050,733 + AO353_13725 0.27 -0.1
3,050,733 + AO353_13725 0.27 +0.0
3,050,733 + AO353_13725 0.27 -1.7
3,050,733 + AO353_13725 0.27 +0.3
3,050,733 + AO353_13725 0.27 -2.7
3,050,733 + AO353_13725 0.27 +0.0
3,050,733 + AO353_13725 0.27 -0.7
3,050,799 - AO353_13725 0.32 +0.1
3,050,885 + AO353_13725 0.38 -0.1
3,050,886 - AO353_13725 0.38 -0.5
3,050,886 - AO353_13725 0.38 -0.4
3,051,167 + AO353_13725 0.59 -1.0
3,051,168 - AO353_13725 0.59 +2.0
3,051,332 + AO353_13725 0.71 -1.8
3,051,332 + AO353_13725 0.71 -2.3
3,051,480 + AO353_13725 0.81 +0.2
3,051,480 + AO353_13725 0.81 -1.1
3,051,480 + AO353_13725 0.81 -0.3
3,051,481 - AO353_13725 0.81 -1.6
3,051,773 + -0.9
3,051,773 + -0.9
3,051,773 + -0.8
3,051,774 - +0.2
3,051,774 - +0.9
3,051,774 - +1.1
3,051,774 - -1.3
3,051,824 + AO353_13730 0.12 -1.6
3,051,824 + AO353_13730 0.12 -0.3
3,051,824 + AO353_13730 0.12 -0.1
3,051,824 + AO353_13730 0.12 -0.1
3,051,825 - AO353_13730 0.12 +0.4
3,051,825 - AO353_13730 0.12 -0.6
3,051,832 + AO353_13730 0.13 +0.1
3,051,832 + AO353_13730 0.13 +0.1
3,052,008 + AO353_13730 0.35 +0.6
3,052,008 + AO353_13730 0.35 +0.9
3,052,008 + AO353_13730 0.35 -0.7
3,052,008 + AO353_13730 0.35 -1.4
3,052,008 + AO353_13730 0.35 -0.8
3,052,008 + AO353_13730 0.35 -1.7
3,052,008 + AO353_13730 0.35 +0.3
3,052,008 + AO353_13730 0.35 -0.7
3,052,008 + AO353_13730 0.35 +1.6
3,052,008 + AO353_13730 0.35 -0.0
3,052,008 + AO353_13730 0.35 +2.5
3,052,008 + AO353_13730 0.35 -1.8
3,052,008 + AO353_13730 0.35 -0.6
3,052,008 + AO353_13730 0.35 -0.0
3,052,009 - AO353_13730 0.35 -1.3
3,052,009 - AO353_13730 0.35 -1.2
3,052,009 - AO353_13730 0.35 -1.0
3,052,009 - AO353_13730 0.35 +1.3
3,052,036 + AO353_13730 0.39 +0.3
3,052,036 + AO353_13730 0.39 +1.2
3,052,036 + AO353_13730 0.39 +0.4
3,052,036 + AO353_13730 0.39 +0.5
3,052,037 - AO353_13730 0.39 -0.0
3,052,037 - AO353_13730 0.39 +0.1
3,052,037 - AO353_13730 0.39 +1.0
3,052,037 - AO353_13730 0.39 -0.6
3,052,037 - AO353_13730 0.39 +0.0
3,052,037 - AO353_13730 0.39 -1.8
3,052,037 - AO353_13730 0.39 -0.2
3,052,037 - AO353_13730 0.39 +2.0
3,052,037 - AO353_13730 0.39 -0.1
3,052,037 - AO353_13730 0.39 -0.4
3,052,037 - AO353_13730 0.39 -1.0
3,052,037 - AO353_13730 0.39 +2.0
3,052,037 - AO353_13730 0.39 +1.2
3,052,054 + AO353_13730 0.41 +0.7
3,052,054 + AO353_13730 0.41 +0.2
3,052,054 + AO353_13730 0.41 +0.6
3,052,055 - AO353_13730 0.41 -0.3
3,052,055 - AO353_13730 0.41 -0.2
3,052,055 - AO353_13730 0.41 +0.6
3,052,057 + AO353_13730 0.41 -1.2
3,052,057 + AO353_13730 0.41 -0.5
3,052,057 + AO353_13730 0.41 -0.7
3,052,057 + AO353_13730 0.41 +0.5
3,052,057 + AO353_13730 0.41 +0.6
3,052,057 + AO353_13730 0.41 -0.3
3,052,057 + AO353_13730 0.41 +0.3
3,052,057 + AO353_13730 0.41 -0.8
3,052,057 + AO353_13730 0.41 -0.7
3,052,057 + AO353_13730 0.41 -0.3
3,052,057 + AO353_13730 0.41 -2.0
3,052,057 + AO353_13730 0.41 -0.7
3,052,057 + AO353_13730 0.41 -0.1
3,052,058 - AO353_13730 0.41 +1.4
3,052,058 - AO353_13730 0.41 +0.6
3,052,058 - AO353_13730 0.41 -0.1
3,052,058 - AO353_13730 0.41 -1.2
3,052,058 - AO353_13730 0.41 -0.4
3,052,058 - AO353_13730 0.41 -0.1
3,052,058 - AO353_13730 0.41 +0.6
3,052,058 - AO353_13730 0.41 -0.4
3,052,058 - AO353_13730 0.41 -0.7
3,052,058 - AO353_13730 0.41 -0.8
3,052,058 - AO353_13730 0.41 +0.7
3,052,058 - AO353_13730 0.41 -0.0
3,052,058 - AO353_13730 0.41 -0.6
3,052,078 + AO353_13730 0.44 +0.5
3,052,135 - AO353_13730 0.51 -0.2
3,052,141 + AO353_13730 0.52 -1.4
3,052,141 + AO353_13730 0.52 +0.4
3,052,142 - AO353_13730 0.52 -1.0
3,052,142 - AO353_13730 0.52 +0.6
3,052,142 - AO353_13730 0.52 +0.1
3,052,412 + AO353_13730 0.86 -0.5
3,052,413 - AO353_13730 0.87 -0.4
3,052,507 + +1.0
3,052,508 - -2.4
3,052,565 + +1.3
3,052,566 - -0.9
3,052,566 - +0.9
3,052,566 - +1.6
3,052,626 + +0.1
3,052,626 + +0.4
3,052,637 + +0.2
3,052,720 + -1.6
3,052,720 + +0.6
3,052,841 + +1.0
3,052,842 - +0.3
3,052,842 - +0.4
3,052,889 + AO353_13735 0.11 -0.2
3,052,889 + AO353_13735 0.11 -0.3
3,052,889 + AO353_13735 0.11 +1.2
3,052,889 + AO353_13735 0.11 -0.0
3,052,890 - AO353_13735 0.11 -2.2
3,052,890 - AO353_13735 0.11 +0.2
3,052,890 - AO353_13735 0.11 +2.3
3,052,890 - AO353_13735 0.11 +0.3
3,052,890 - AO353_13735 0.11 -1.2
3,052,965 + AO353_13735 0.16 +0.1
3,052,965 + AO353_13735 0.16 +0.2
3,052,965 + AO353_13735 0.16 +0.0
3,052,965 + AO353_13735 0.16 -0.6
3,052,965 + AO353_13735 0.16 -0.4
3,052,965 + AO353_13735 0.16 -0.8
3,052,965 + AO353_13735 0.16 +0.6
3,052,965 + AO353_13735 0.16 +1.0
3,052,965 + AO353_13735 0.16 -0.0
3,052,966 - AO353_13735 0.16 -0.9
3,053,001 + AO353_13735 0.19 +1.2
3,053,001 + AO353_13735 0.19 -0.4
3,053,010 + AO353_13735 0.20 +0.4
3,053,010 + AO353_13735 0.20 +0.1
3,053,010 + AO353_13735 0.20 +1.3
3,053,011 - AO353_13735 0.20 +0.6
3,053,057 + AO353_13735 0.23 +0.7
3,053,057 + AO353_13735 0.23 -1.4
3,053,058 - AO353_13735 0.23 +0.1
3,053,252 + AO353_13735 0.38 +0.0
3,053,252 + AO353_13735 0.38 +1.6
3,053,253 - AO353_13735 0.38 +1.0
3,053,253 - AO353_13735 0.38 -1.0
3,053,253 - AO353_13735 0.38 -0.5
3,053,411 - AO353_13735 0.50 -0.0
3,053,438 - AO353_13735 0.52 +0.0

Or see this region's nucleotide sequence