Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004255 and ABIE53_004256 are separated by 121 nucleotides ABIE53_004256 and ABIE53_004257 are separated by 31 nucleotides ABIE53_004257 and ABIE53_004258 are separated by 258 nucleotides
ABIE53_004255: ABIE53_004255 - hypothetical protein, at 428,927 to 429,382
_004255
ABIE53_004256: ABIE53_004256 - threonine/homoserine/homoserine lactone efflux protein, at 429,504 to 430,130
_004256
ABIE53_004257: ABIE53_004257 - DNA-binding transcriptional MocR family regulator, at 430,162 to 431,577
_004257
ABIE53_004258: ABIE53_004258 - beta-alanine--pyruvate transaminase, at 431,836 to 433,164
_004258
Position (kb) 430
431
432 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 429.352 kb on + strand at 429.352 kb on + strand at 429.352 kb on + strand at 429.353 kb on - strand at 429.353 kb on - strand at 429.353 kb on - strand at 429.353 kb on - strand at 429.388 kb on - strand at 429.388 kb on - strand at 429.388 kb on - strand at 429.388 kb on - strand at 429.463 kb on + strand at 429.463 kb on + strand at 429.464 kb on - strand at 429.482 kb on + strand at 429.483 kb on - strand at 429.510 kb on + strand at 429.511 kb on - strand at 429.511 kb on - strand at 429.511 kb on - strand at 429.668 kb on - strand, within ABIE53_004256 at 429.668 kb on - strand, within ABIE53_004256 at 429.668 kb on - strand, within ABIE53_004256 at 429.726 kb on + strand, within ABIE53_004256 at 429.726 kb on + strand, within ABIE53_004256 at 429.726 kb on + strand, within ABIE53_004256 at 429.726 kb on + strand, within ABIE53_004256 at 429.727 kb on - strand, within ABIE53_004256 at 429.727 kb on - strand, within ABIE53_004256 at 429.757 kb on - strand, within ABIE53_004256 at 429.763 kb on + strand, within ABIE53_004256 at 429.763 kb on + strand, within ABIE53_004256 at 429.763 kb on + strand, within ABIE53_004256 at 429.763 kb on + strand, within ABIE53_004256 at 429.763 kb on + strand, within ABIE53_004256 at 429.764 kb on - strand, within ABIE53_004256 at 429.764 kb on - strand, within ABIE53_004256 at 429.765 kb on + strand, within ABIE53_004256 at 429.765 kb on + strand, within ABIE53_004256 at 429.766 kb on - strand, within ABIE53_004256 at 429.766 kb on - strand, within ABIE53_004256 at 429.766 kb on - strand, within ABIE53_004256 at 429.766 kb on - strand, within ABIE53_004256 at 429.800 kb on + strand, within ABIE53_004256 at 429.800 kb on + strand, within ABIE53_004256 at 429.800 kb on + strand, within ABIE53_004256 at 429.800 kb on + strand, within ABIE53_004256 at 429.800 kb on + strand, within ABIE53_004256 at 429.800 kb on + strand, within ABIE53_004256 at 429.800 kb on + strand, within ABIE53_004256 at 429.801 kb on - strand, within ABIE53_004256 at 429.801 kb on - strand, within ABIE53_004256 at 429.801 kb on - strand, within ABIE53_004256 at 429.837 kb on + strand, within ABIE53_004256 at 429.837 kb on + strand, within ABIE53_004256 at 429.837 kb on + strand, within ABIE53_004256 at 429.837 kb on + strand, within ABIE53_004256 at 429.837 kb on + strand, within ABIE53_004256 at 429.837 kb on + strand, within ABIE53_004256 at 429.838 kb on - strand, within ABIE53_004256 at 429.838 kb on - strand, within ABIE53_004256 at 429.845 kb on + strand, within ABIE53_004256 at 429.845 kb on + strand, within ABIE53_004256 at 429.846 kb on - strand, within ABIE53_004256 at 429.924 kb on + strand, within ABIE53_004256 at 429.924 kb on + strand, within ABIE53_004256 at 429.924 kb on + strand, within ABIE53_004256 at 429.924 kb on + strand, within ABIE53_004256 at 429.924 kb on + strand, within ABIE53_004256 at 429.924 kb on + strand, within ABIE53_004256 at 429.924 kb on + strand, within ABIE53_004256 at 429.925 kb on - strand, within ABIE53_004256 at 429.960 kb on + strand, within ABIE53_004256 at 429.960 kb on + strand, within ABIE53_004256 at 429.960 kb on + strand, within ABIE53_004256 at 429.960 kb on + strand, within ABIE53_004256 at 429.961 kb on - strand, within ABIE53_004256 at 429.961 kb on - strand, within ABIE53_004256 at 429.961 kb on - strand, within ABIE53_004256 at 429.961 kb on - strand, within ABIE53_004256 at 429.961 kb on - strand, within ABIE53_004256 at 429.961 kb on - strand, within ABIE53_004256 at 429.961 kb on - strand, within ABIE53_004256 at 430.090 kb on - strand at 430.090 kb on - strand at 430.128 kb on + strand at 430.180 kb on + strand at 430.181 kb on - strand at 430.181 kb on - strand at 430.181 kb on - strand at 430.220 kb on + strand at 430.271 kb on + strand at 430.271 kb on + strand at 430.271 kb on + strand at 430.271 kb on + strand at 430.271 kb on + strand at 430.272 kb on - strand at 430.272 kb on - strand at 430.272 kb on - strand at 430.501 kb on - strand, within ABIE53_004257 at 430.595 kb on + strand, within ABIE53_004257 at 430.596 kb on - strand, within ABIE53_004257 at 430.596 kb on - strand, within ABIE53_004257 at 430.643 kb on + strand, within ABIE53_004257 at 430.643 kb on + strand, within ABIE53_004257 at 430.643 kb on + strand, within ABIE53_004257 at 430.643 kb on + strand, within ABIE53_004257 at 430.644 kb on - strand, within ABIE53_004257 at 430.644 kb on - strand, within ABIE53_004257 at 430.644 kb on - strand, within ABIE53_004257 at 430.644 kb on - strand, within ABIE53_004257 at 431.257 kb on + strand, within ABIE53_004257 at 431.258 kb on - strand, within ABIE53_004257 at 431.258 kb on - strand, within ABIE53_004257 at 431.399 kb on + strand, within ABIE53_004257 at 431.399 kb on + strand, within ABIE53_004257 at 431.399 kb on + strand, within ABIE53_004257 at 431.400 kb on - strand, within ABIE53_004257 at 431.400 kb on - strand, within ABIE53_004257 at 431.400 kb on - strand, within ABIE53_004257 at 431.651 kb on + strand at 431.709 kb on + strand at 431.777 kb on + strand at 431.777 kb on + strand at 431.777 kb on + strand at 431.777 kb on + strand at 431.777 kb on + strand at 431.778 kb on - strand at 431.778 kb on - strand at 431.778 kb on - strand at 431.778 kb on - strand at 431.944 kb on + strand at 431.944 kb on + strand at 431.944 kb on + strand at 431.944 kb on + strand at 431.944 kb on + strand at 431.944 kb on + strand at 431.944 kb on + strand at 431.944 kb on + strand at 431.944 kb on + strand at 431.944 kb on + strand at 431.945 kb on - strand at 431.945 kb on - strand at 431.945 kb on - strand at 431.945 kb on - strand at 431.945 kb on - strand at 431.945 kb on - strand at 431.945 kb on - strand at 431.945 kb on - strand at 431.945 kb on - strand at 431.945 kb on - strand at 431.947 kb on + strand at 431.947 kb on + strand at 431.948 kb on - strand at 431.948 kb on - strand at 431.948 kb on - strand at 431.993 kb on + strand, within ABIE53_004258 at 431.994 kb on - strand, within ABIE53_004258 at 431.994 kb on - strand, within ABIE53_004258 at 431.994 kb on - strand, within ABIE53_004258 at 431.994 kb on - strand, within ABIE53_004258 at 432.214 kb on + strand, within ABIE53_004258 at 432.541 kb on + strand, within ABIE53_004258 at 432.541 kb on + strand, within ABIE53_004258 at 432.542 kb on - strand, within ABIE53_004258 at 432.542 kb on - strand, within ABIE53_004258
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 429,352 + -0.7 429,352 + -0.7 429,352 + -0.4 429,353 - -0.9 429,353 - +0.8 429,353 - -0.7 429,353 - -0.2 429,388 - -0.2 429,388 - -0.6 429,388 - +0.2 429,388 - +0.7 429,463 + +0.2 429,463 + -0.2 429,464 - -1.5 429,482 + -0.7 429,483 - -0.2 429,510 + +0.2 429,511 - -1.1 429,511 - -0.5 429,511 - -0.3 429,668 - ABIE53_004256 0.26 -0.6 429,668 - ABIE53_004256 0.26 +0.2 429,668 - ABIE53_004256 0.26 -1.2 429,726 + ABIE53_004256 0.35 +1.8 429,726 + ABIE53_004256 0.35 +0.5 429,726 + ABIE53_004256 0.35 +1.2 429,726 + ABIE53_004256 0.35 +0.8 429,727 - ABIE53_004256 0.36 -0.1 429,727 - ABIE53_004256 0.36 +0.2 429,757 - ABIE53_004256 0.40 -1.2 429,763 + ABIE53_004256 0.41 -0.9 429,763 + ABIE53_004256 0.41 -1.7 429,763 + ABIE53_004256 0.41 -0.9 429,763 + ABIE53_004256 0.41 +0.4 429,763 + ABIE53_004256 0.41 -1.5 429,764 - ABIE53_004256 0.41 +0.8 429,764 - ABIE53_004256 0.41 -1.0 429,765 + ABIE53_004256 0.42 +1.8 429,765 + ABIE53_004256 0.42 -1.4 429,766 - ABIE53_004256 0.42 -0.2 429,766 - ABIE53_004256 0.42 +0.3 429,766 - ABIE53_004256 0.42 -1.1 429,766 - ABIE53_004256 0.42 -0.0 429,800 + ABIE53_004256 0.47 -1.0 429,800 + ABIE53_004256 0.47 -0.2 429,800 + ABIE53_004256 0.47 -0.4 429,800 + ABIE53_004256 0.47 -1.0 429,800 + ABIE53_004256 0.47 -0.8 429,800 + ABIE53_004256 0.47 -0.3 429,800 + ABIE53_004256 0.47 -0.6 429,801 - ABIE53_004256 0.47 -0.1 429,801 - ABIE53_004256 0.47 -0.2 429,801 - ABIE53_004256 0.47 +2.4 429,837 + ABIE53_004256 0.53 -0.4 429,837 + ABIE53_004256 0.53 -0.3 429,837 + ABIE53_004256 0.53 +1.0 429,837 + ABIE53_004256 0.53 +0.8 429,837 + ABIE53_004256 0.53 +0.2 429,837 + ABIE53_004256 0.53 -0.8 429,838 - ABIE53_004256 0.53 +0.2 429,838 - ABIE53_004256 0.53 -0.5 429,845 + ABIE53_004256 0.54 +0.0 429,845 + ABIE53_004256 0.54 -0.0 429,846 - ABIE53_004256 0.55 -1.0 429,924 + ABIE53_004256 0.67 +1.0 429,924 + ABIE53_004256 0.67 -0.0 429,924 + ABIE53_004256 0.67 +0.2 429,924 + ABIE53_004256 0.67 -2.9 429,924 + ABIE53_004256 0.67 -1.0 429,924 + ABIE53_004256 0.67 -0.7 429,924 + ABIE53_004256 0.67 +0.8 429,925 - ABIE53_004256 0.67 -1.4 429,960 + ABIE53_004256 0.73 -2.1 429,960 + ABIE53_004256 0.73 -0.5 429,960 + ABIE53_004256 0.73 +0.5 429,960 + ABIE53_004256 0.73 -0.8 429,961 - ABIE53_004256 0.73 -0.9 429,961 - ABIE53_004256 0.73 -0.5 429,961 - ABIE53_004256 0.73 +1.6 429,961 - ABIE53_004256 0.73 -0.2 429,961 - ABIE53_004256 0.73 -0.4 429,961 - ABIE53_004256 0.73 +0.3 429,961 - ABIE53_004256 0.73 -1.1 430,090 - -0.5 430,090 - -0.8 430,128 + -0.4 430,180 + +1.8 430,181 - -0.4 430,181 - -0.5 430,181 - -0.6 430,220 + +0.4 430,271 + -0.7 430,271 + -0.3 430,271 + -2.2 430,271 + -1.0 430,271 + -1.0 430,272 - +1.2 430,272 - -1.7 430,272 - +0.1 430,501 - ABIE53_004257 0.24 +0.1 430,595 + ABIE53_004257 0.31 +0.5 430,596 - ABIE53_004257 0.31 -0.7 430,596 - ABIE53_004257 0.31 -1.9 430,643 + ABIE53_004257 0.34 +0.6 430,643 + ABIE53_004257 0.34 +0.2 430,643 + ABIE53_004257 0.34 +0.5 430,643 + ABIE53_004257 0.34 +0.0 430,644 - ABIE53_004257 0.34 -0.5 430,644 - ABIE53_004257 0.34 -0.2 430,644 - ABIE53_004257 0.34 +1.3 430,644 - ABIE53_004257 0.34 +0.7 431,257 + ABIE53_004257 0.77 -0.7 431,258 - ABIE53_004257 0.77 -0.2 431,258 - ABIE53_004257 0.77 -0.3 431,399 + ABIE53_004257 0.87 -0.4 431,399 + ABIE53_004257 0.87 +0.8 431,399 + ABIE53_004257 0.87 +0.5 431,400 - ABIE53_004257 0.87 -1.2 431,400 - ABIE53_004257 0.87 -1.3 431,400 - ABIE53_004257 0.87 -1.4 431,651 + -1.3 431,709 + +0.3 431,777 + -2.0 431,777 + -1.2 431,777 + +3.4 431,777 + +0.2 431,777 + +1.1 431,778 - -0.5 431,778 - -1.7 431,778 - -1.4 431,778 - -0.1 431,944 + +0.6 431,944 + +2.1 431,944 + -0.7 431,944 + -0.1 431,944 + -0.5 431,944 + +0.2 431,944 + -1.1 431,944 + +1.8 431,944 + +0.1 431,944 + -0.0 431,945 - -0.2 431,945 - +1.3 431,945 - +1.3 431,945 - -1.3 431,945 - -0.7 431,945 - -0.7 431,945 - -0.4 431,945 - +0.6 431,945 - +2.2 431,945 - +0.6 431,947 + -1.1 431,947 + -1.7 431,948 - -0.5 431,948 - +0.8 431,948 - -0.0 431,993 + ABIE53_004258 0.12 -0.2 431,994 - ABIE53_004258 0.12 -0.5 431,994 - ABIE53_004258 0.12 -1.5 431,994 - ABIE53_004258 0.12 -0.7 431,994 - ABIE53_004258 0.12 -0.5 432,214 + ABIE53_004258 0.28 -0.8 432,541 + ABIE53_004258 0.53 +0.4 432,541 + ABIE53_004258 0.53 +0.5 432,542 - ABIE53_004258 0.53 +1.0 432,542 - ABIE53_004258 0.53 +1.4
Or see this region's nucleotide sequence