Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004095 and ABIE53_004096 are separated by 802 nucleotides ABIE53_004096 and ABIE53_004097 are separated by 531 nucleotides ABIE53_004097 and ABIE53_004098 are separated by 13 nucleotides
ABIE53_004095: ABIE53_004095 - transcriptional regulator with XRE-family HTH domain, at 258,153 to 259,073
_004095
ABIE53_004096: ABIE53_004096 - putative membrane protein YedE/YeeE, at 259,876 to 261,099
_004096
ABIE53_004097: ABIE53_004097 - flagellar transcriptional activator FlhD, at 261,631 to 261,951
_004097
ABIE53_004098: ABIE53_004098 - flagellar transcriptional activator FlhC, at 261,965 to 262,543
_004098
Position (kb) 259
260
261
262 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 259.217 kb on + strand at 259.264 kb on - strand at 259.264 kb on - strand at 259.279 kb on + strand at 259.288 kb on - strand at 259.288 kb on - strand at 259.313 kb on + strand at 259.313 kb on + strand at 259.378 kb on - strand at 259.466 kb on + strand at 259.467 kb on - strand at 259.467 kb on - strand at 259.467 kb on - strand at 259.467 kb on - strand at 259.467 kb on - strand at 259.467 kb on - strand at 259.467 kb on - strand at 259.622 kb on - strand at 259.697 kb on + strand at 259.697 kb on + strand at 259.697 kb on + strand at 259.697 kb on + strand at 259.697 kb on + strand at 259.697 kb on + strand at 259.697 kb on + strand at 259.697 kb on + strand at 259.697 kb on + strand at 259.697 kb on + strand at 259.698 kb on - strand at 259.698 kb on - strand at 259.698 kb on - strand at 259.698 kb on - strand at 259.698 kb on - strand at 259.698 kb on - strand at 259.698 kb on - strand at 259.698 kb on - strand at 259.698 kb on - strand at 259.698 kb on - strand at 259.698 kb on - strand at 259.698 kb on - strand at 259.698 kb on - strand at 259.698 kb on - strand at 259.698 kb on - strand at 259.698 kb on - strand at 259.698 kb on - strand at 259.769 kb on + strand at 259.769 kb on + strand at 259.770 kb on - strand at 259.770 kb on - strand at 259.770 kb on - strand at 259.864 kb on - strand at 259.867 kb on + strand at 259.868 kb on + strand at 259.868 kb on + strand at 259.868 kb on + strand at 259.868 kb on + strand at 259.868 kb on + strand at 259.869 kb on - strand at 259.869 kb on - strand at 259.919 kb on - strand at 259.978 kb on + strand at 259.978 kb on + strand at 259.978 kb on + strand at 259.979 kb on - strand at 259.979 kb on - strand at 260.017 kb on + strand, within ABIE53_004096 at 260.017 kb on + strand, within ABIE53_004096 at 260.017 kb on + strand, within ABIE53_004096 at 260.017 kb on + strand, within ABIE53_004096 at 260.017 kb on + strand, within ABIE53_004096 at 260.017 kb on + strand, within ABIE53_004096 at 260.018 kb on - strand, within ABIE53_004096 at 260.018 kb on - strand, within ABIE53_004096 at 260.018 kb on - strand, within ABIE53_004096 at 260.018 kb on - strand, within ABIE53_004096 at 260.018 kb on - strand, within ABIE53_004096 at 260.018 kb on - strand, within ABIE53_004096 at 260.018 kb on - strand, within ABIE53_004096 at 260.018 kb on - strand, within ABIE53_004096 at 260.021 kb on + strand, within ABIE53_004096 at 260.021 kb on + strand, within ABIE53_004096 at 260.021 kb on + strand, within ABIE53_004096 at 260.021 kb on + strand, within ABIE53_004096 at 260.021 kb on + strand, within ABIE53_004096 at 260.021 kb on + strand, within ABIE53_004096 at 260.022 kb on - strand, within ABIE53_004096 at 260.022 kb on - strand, within ABIE53_004096 at 260.022 kb on - strand, within ABIE53_004096 at 260.050 kb on + strand, within ABIE53_004096 at 260.050 kb on + strand, within ABIE53_004096 at 260.051 kb on - strand, within ABIE53_004096 at 260.051 kb on - strand, within ABIE53_004096 at 260.070 kb on + strand, within ABIE53_004096 at 260.070 kb on + strand, within ABIE53_004096 at 260.070 kb on + strand, within ABIE53_004096 at 260.071 kb on - strand, within ABIE53_004096 at 260.071 kb on - strand, within ABIE53_004096 at 260.087 kb on + strand, within ABIE53_004096 at 260.087 kb on + strand, within ABIE53_004096 at 260.087 kb on + strand, within ABIE53_004096 at 260.087 kb on + strand, within ABIE53_004096 at 260.087 kb on + strand, within ABIE53_004096 at 260.087 kb on + strand, within ABIE53_004096 at 260.087 kb on + strand, within ABIE53_004096 at 260.087 kb on + strand, within ABIE53_004096 at 260.087 kb on + strand, within ABIE53_004096 at 260.088 kb on - strand, within ABIE53_004096 at 260.088 kb on - strand, within ABIE53_004096 at 260.088 kb on - strand, within ABIE53_004096 at 260.088 kb on - strand, within ABIE53_004096 at 260.088 kb on - strand, within ABIE53_004096 at 260.088 kb on - strand, within ABIE53_004096 at 260.088 kb on - strand, within ABIE53_004096 at 260.091 kb on + strand, within ABIE53_004096 at 260.092 kb on - strand, within ABIE53_004096 at 260.092 kb on - strand, within ABIE53_004096 at 260.266 kb on - strand, within ABIE53_004096 at 260.266 kb on - strand, within ABIE53_004096 at 260.302 kb on + strand, within ABIE53_004096 at 260.303 kb on - strand, within ABIE53_004096 at 260.303 kb on - strand, within ABIE53_004096 at 260.303 kb on - strand, within ABIE53_004096 at 260.303 kb on - strand, within ABIE53_004096 at 260.303 kb on - strand, within ABIE53_004096 at 260.382 kb on + strand, within ABIE53_004096 at 260.382 kb on + strand, within ABIE53_004096 at 260.382 kb on + strand, within ABIE53_004096 at 260.382 kb on + strand, within ABIE53_004096 at 260.382 kb on + strand, within ABIE53_004096 at 260.382 kb on + strand, within ABIE53_004096 at 260.382 kb on + strand, within ABIE53_004096 at 260.382 kb on + strand, within ABIE53_004096 at 260.382 kb on + strand, within ABIE53_004096 at 260.383 kb on - strand, within ABIE53_004096 at 260.383 kb on - strand, within ABIE53_004096 at 260.383 kb on - strand, within ABIE53_004096 at 260.383 kb on - strand, within ABIE53_004096 at 260.383 kb on - strand, within ABIE53_004096 at 260.383 kb on - strand, within ABIE53_004096 at 260.734 kb on + strand, within ABIE53_004096 at 260.778 kb on + strand, within ABIE53_004096 at 260.778 kb on + strand, within ABIE53_004096 at 260.778 kb on + strand, within ABIE53_004096 at 260.779 kb on - strand, within ABIE53_004096 at 260.779 kb on - strand, within ABIE53_004096 at 260.779 kb on - strand, within ABIE53_004096 at 260.942 kb on - strand, within ABIE53_004096 at 260.949 kb on + strand, within ABIE53_004096 at 260.950 kb on - strand, within ABIE53_004096 at 261.035 kb on + strand at 261.035 kb on + strand at 261.035 kb on + strand at 261.035 kb on + strand at 261.035 kb on + strand at 261.035 kb on + strand at 261.036 kb on - strand at 261.036 kb on - strand at 261.116 kb on + strand at 261.117 kb on - strand at 261.159 kb on + strand at 261.160 kb on - strand at 261.251 kb on - strand at 261.251 kb on - strand at 261.365 kb on + strand at 261.366 kb on - strand at 261.366 kb on - strand at 261.366 kb on - strand at 261.366 kb on - strand at 261.376 kb on - strand at 261.378 kb on + strand at 261.378 kb on + strand at 261.379 kb on - strand at 261.379 kb on - strand at 261.379 kb on - strand at 261.466 kb on + strand at 261.466 kb on + strand at 261.467 kb on - strand at 261.467 kb on - strand at 261.525 kb on + strand at 261.526 kb on - strand at 261.582 kb on + strand at 261.583 kb on - strand at 261.583 kb on - strand at 261.601 kb on + strand at 261.601 kb on + strand at 261.601 kb on + strand at 261.602 kb on - strand at 261.602 kb on - strand at 261.602 kb on - strand at 261.602 kb on - strand at 261.604 kb on + strand at 261.604 kb on + strand at 261.605 kb on - strand at 261.605 kb on - strand at 261.605 kb on - strand at 261.605 kb on - strand at 261.605 kb on - strand at 261.605 kb on - strand at 261.605 kb on - strand at 261.639 kb on + strand at 261.639 kb on + strand at 261.639 kb on + strand at 261.640 kb on - strand at 261.640 kb on - strand at 261.672 kb on + strand, within ABIE53_004097 at 261.673 kb on - strand, within ABIE53_004097 at 261.682 kb on + strand, within ABIE53_004097 at 261.682 kb on + strand, within ABIE53_004097 at 261.682 kb on + strand, within ABIE53_004097 at 261.682 kb on + strand, within ABIE53_004097 at 261.682 kb on + strand, within ABIE53_004097 at 261.682 kb on + strand, within ABIE53_004097 at 261.682 kb on + strand, within ABIE53_004097 at 261.682 kb on + strand, within ABIE53_004097 at 261.682 kb on + strand, within ABIE53_004097 at 261.682 kb on + strand, within ABIE53_004097 at 261.682 kb on + strand, within ABIE53_004097 at 261.682 kb on + strand, within ABIE53_004097 at 261.683 kb on - strand, within ABIE53_004097 at 261.683 kb on - strand, within ABIE53_004097 at 261.683 kb on - strand, within ABIE53_004097 at 261.683 kb on - strand, within ABIE53_004097 at 261.683 kb on - strand, within ABIE53_004097 at 261.949 kb on + strand at 261.949 kb on + strand at 261.950 kb on - strand at 261.950 kb on - strand at 261.952 kb on + strand at 261.952 kb on + strand at 261.952 kb on + strand at 261.952 kb on + strand at 261.952 kb on + strand at 261.952 kb on + strand at 261.952 kb on + strand at 261.952 kb on + strand at 261.952 kb on + strand at 261.953 kb on - strand at 261.953 kb on - strand at 261.953 kb on - strand at 261.953 kb on - strand at 261.970 kb on + strand at 261.970 kb on + strand at 261.970 kb on + strand at 261.970 kb on + strand at 261.970 kb on + strand at 261.970 kb on + strand at 261.970 kb on + strand at 261.970 kb on + strand at 261.971 kb on - strand at 261.971 kb on - strand at 261.971 kb on - strand at 261.971 kb on - strand at 261.976 kb on + strand at 261.976 kb on + strand at 261.976 kb on + strand at 261.976 kb on + strand at 261.977 kb on - strand at 261.977 kb on - strand at 262.095 kb on - strand, within ABIE53_004098
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 259,217 + +1.0 259,264 - -0.5 259,264 - -0.6 259,279 + -1.0 259,288 - -0.7 259,288 - -1.1 259,313 + +0.6 259,313 + +0.2 259,378 - -1.5 259,466 + -1.4 259,467 - -0.7 259,467 - -0.5 259,467 - -0.4 259,467 - -0.2 259,467 - -0.4 259,467 - +0.6 259,467 - -0.2 259,622 - +0.1 259,697 + +0.1 259,697 + -0.8 259,697 + +0.8 259,697 + -0.5 259,697 + -1.8 259,697 + +1.8 259,697 + +1.8 259,697 + +0.2 259,697 + +1.1 259,697 + +1.0 259,698 - -0.2 259,698 - -1.1 259,698 - -0.7 259,698 - -1.0 259,698 - -0.2 259,698 - -0.4 259,698 - +2.8 259,698 - -0.3 259,698 - +0.0 259,698 - -1.8 259,698 - +0.2 259,698 - -0.9 259,698 - -1.3 259,698 - -0.1 259,698 - +0.7 259,698 - +3.1 259,698 - -1.2 259,769 + -1.3 259,769 + +1.1 259,770 - -2.0 259,770 - -0.1 259,770 - -0.8 259,864 - -0.5 259,867 + +0.1 259,868 + +0.8 259,868 + +0.3 259,868 + -0.1 259,868 + +3.4 259,868 + -0.9 259,869 - +1.8 259,869 - +0.4 259,919 - -0.2 259,978 + +1.4 259,978 + +0.8 259,978 + -1.6 259,979 - +0.1 259,979 - +0.7 260,017 + ABIE53_004096 0.12 +0.7 260,017 + ABIE53_004096 0.12 +1.1 260,017 + ABIE53_004096 0.12 -0.9 260,017 + ABIE53_004096 0.12 -1.0 260,017 + ABIE53_004096 0.12 -0.8 260,017 + ABIE53_004096 0.12 -0.2 260,018 - ABIE53_004096 0.12 -1.1 260,018 - ABIE53_004096 0.12 -1.8 260,018 - ABIE53_004096 0.12 -0.7 260,018 - ABIE53_004096 0.12 +1.2 260,018 - ABIE53_004096 0.12 +0.8 260,018 - ABIE53_004096 0.12 -0.6 260,018 - ABIE53_004096 0.12 -1.1 260,018 - ABIE53_004096 0.12 +1.8 260,021 + ABIE53_004096 0.12 +1.0 260,021 + ABIE53_004096 0.12 +0.2 260,021 + ABIE53_004096 0.12 -0.5 260,021 + ABIE53_004096 0.12 -1.1 260,021 + ABIE53_004096 0.12 -0.8 260,021 + ABIE53_004096 0.12 -1.4 260,022 - ABIE53_004096 0.12 +0.2 260,022 - ABIE53_004096 0.12 -1.3 260,022 - ABIE53_004096 0.12 -0.2 260,050 + ABIE53_004096 0.14 +0.8 260,050 + ABIE53_004096 0.14 +1.3 260,051 - ABIE53_004096 0.14 -1.3 260,051 - ABIE53_004096 0.14 +1.8 260,070 + ABIE53_004096 0.16 -0.4 260,070 + ABIE53_004096 0.16 -1.1 260,070 + ABIE53_004096 0.16 +0.2 260,071 - ABIE53_004096 0.16 -0.5 260,071 - ABIE53_004096 0.16 +0.5 260,087 + ABIE53_004096 0.17 -0.5 260,087 + ABIE53_004096 0.17 +0.7 260,087 + ABIE53_004096 0.17 +1.1 260,087 + ABIE53_004096 0.17 -2.7 260,087 + ABIE53_004096 0.17 -0.4 260,087 + ABIE53_004096 0.17 -1.2 260,087 + ABIE53_004096 0.17 -0.8 260,087 + ABIE53_004096 0.17 -0.3 260,087 + ABIE53_004096 0.17 -0.2 260,088 - ABIE53_004096 0.17 +0.5 260,088 - ABIE53_004096 0.17 +0.3 260,088 - ABIE53_004096 0.17 -0.2 260,088 - ABIE53_004096 0.17 +2.4 260,088 - ABIE53_004096 0.17 -1.5 260,088 - ABIE53_004096 0.17 +0.5 260,088 - ABIE53_004096 0.17 -0.5 260,091 + ABIE53_004096 0.18 +0.2 260,092 - ABIE53_004096 0.18 +1.1 260,092 - ABIE53_004096 0.18 -1.4 260,266 - ABIE53_004096 0.32 -0.3 260,266 - ABIE53_004096 0.32 +0.2 260,302 + ABIE53_004096 0.35 -0.2 260,303 - ABIE53_004096 0.35 -1.2 260,303 - ABIE53_004096 0.35 -0.0 260,303 - ABIE53_004096 0.35 +3.4 260,303 - ABIE53_004096 0.35 -0.3 260,303 - ABIE53_004096 0.35 -0.8 260,382 + ABIE53_004096 0.41 -1.5 260,382 + ABIE53_004096 0.41 +0.2 260,382 + ABIE53_004096 0.41 -0.2 260,382 + ABIE53_004096 0.41 -0.8 260,382 + ABIE53_004096 0.41 -0.5 260,382 + ABIE53_004096 0.41 -0.7 260,382 + ABIE53_004096 0.41 -1.4 260,382 + ABIE53_004096 0.41 -0.4 260,382 + ABIE53_004096 0.41 +1.5 260,383 - ABIE53_004096 0.41 -0.5 260,383 - ABIE53_004096 0.41 -0.2 260,383 - ABIE53_004096 0.41 -0.5 260,383 - ABIE53_004096 0.41 +0.2 260,383 - ABIE53_004096 0.41 +0.4 260,383 - ABIE53_004096 0.41 +1.8 260,734 + ABIE53_004096 0.70 +0.2 260,778 + ABIE53_004096 0.74 -0.3 260,778 + ABIE53_004096 0.74 -1.0 260,778 + ABIE53_004096 0.74 -2.5 260,779 - ABIE53_004096 0.74 -1.1 260,779 - ABIE53_004096 0.74 -0.3 260,779 - ABIE53_004096 0.74 -0.2 260,942 - ABIE53_004096 0.87 +0.1 260,949 + ABIE53_004096 0.88 -1.5 260,950 - ABIE53_004096 0.88 -0.6 261,035 + -0.2 261,035 + +1.0 261,035 + +0.5 261,035 + +0.1 261,035 + +1.0 261,035 + +0.2 261,036 - +0.6 261,036 - -1.3 261,116 + -1.3 261,117 - +1.4 261,159 + +0.8 261,160 - +0.7 261,251 - +1.8 261,251 - +0.1 261,365 + +1.2 261,366 - +1.8 261,366 - -0.5 261,366 - -0.2 261,366 - -1.0 261,376 - +0.1 261,378 + +0.0 261,378 + -1.9 261,379 - -1.1 261,379 - -1.2 261,379 - -0.7 261,466 + -0.2 261,466 + -0.5 261,467 - +0.4 261,467 - +0.6 261,525 + +0.7 261,526 - +3.3 261,582 + +3.1 261,583 - +1.6 261,583 - +3.4 261,601 + +1.5 261,601 + -0.2 261,601 + +1.4 261,602 - +1.2 261,602 - +1.7 261,602 - +2.2 261,602 - +2.1 261,604 + -0.1 261,604 + +1.2 261,605 - +1.9 261,605 - +2.1 261,605 - +1.8 261,605 - +2.3 261,605 - +2.7 261,605 - +1.9 261,605 - +1.7 261,639 + +2.0 261,639 + +1.3 261,639 + +1.8 261,640 - +2.1 261,640 - +3.0 261,672 + ABIE53_004097 0.13 +1.8 261,673 - ABIE53_004097 0.13 +2.2 261,682 + ABIE53_004097 0.16 +2.6 261,682 + ABIE53_004097 0.16 +1.6 261,682 + ABIE53_004097 0.16 +2.6 261,682 + ABIE53_004097 0.16 +2.1 261,682 + ABIE53_004097 0.16 +1.4 261,682 + ABIE53_004097 0.16 +1.5 261,682 + ABIE53_004097 0.16 +1.7 261,682 + ABIE53_004097 0.16 +2.7 261,682 + ABIE53_004097 0.16 -0.1 261,682 + ABIE53_004097 0.16 +2.7 261,682 + ABIE53_004097 0.16 +2.1 261,682 + ABIE53_004097 0.16 +2.6 261,683 - ABIE53_004097 0.16 +1.4 261,683 - ABIE53_004097 0.16 +1.7 261,683 - ABIE53_004097 0.16 +0.8 261,683 - ABIE53_004097 0.16 +1.3 261,683 - ABIE53_004097 0.16 +2.0 261,949 + +0.2 261,949 + +0.8 261,950 - +1.1 261,950 - +1.4 261,952 + -0.0 261,952 + +1.6 261,952 + +3.4 261,952 + +0.6 261,952 + +1.3 261,952 + -0.5 261,952 + +1.0 261,952 + +1.0 261,952 + +0.7 261,953 - +1.0 261,953 - +3.3 261,953 - +1.7 261,953 - +0.2 261,970 + +1.8 261,970 + +2.6 261,970 + +1.5 261,970 + +1.2 261,970 + +2.0 261,970 + +2.1 261,970 + +2.6 261,970 + +1.0 261,971 - +1.8 261,971 - +3.1 261,971 - +0.8 261,971 - +1.4 261,976 + +1.6 261,976 + +1.7 261,976 + -0.0 261,976 + +0.2 261,977 - +1.2 261,977 - +1.1 262,095 - ABIE53_004098 0.22 +0.6
Or see this region's nucleotide sequence