Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001965

Experiment: D-Trehalose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose (C)
2,216,658	+		ABIE53_001964	0.21	-0.5
2,216,658	+		ABIE53_001964	0.21	-0.6
2,216,658	+		ABIE53_001964	0.21	-2.7
2,216,659	-		ABIE53_001964	0.21	-0.5
2,216,659	-		ABIE53_001964	0.21	-1.4
2,216,659	-		ABIE53_001964	0.21	-0.6
2,216,659	-		ABIE53_001964	0.21	+1.3
2,216,742	+		ABIE53_001964	0.28	+0.8
2,216,743	-		ABIE53_001964	0.28	-0.8
2,216,754	+		ABIE53_001964	0.29	-0.3
2,216,754	+		ABIE53_001964	0.29	+0.3
2,216,754	+		ABIE53_001964	0.29	-0.1
2,216,754	+		ABIE53_001964	0.29	-1.2
2,216,754	+		ABIE53_001964	0.29	+1.9
2,216,754	+		ABIE53_001964	0.29	+0.5
2,216,754	+		ABIE53_001964	0.29	+1.3
2,216,755	-		ABIE53_001964	0.29	-1.4
2,216,755	-		ABIE53_001964	0.29	-1.4
2,216,755	-		ABIE53_001964	0.29	+0.5
2,216,755	-		ABIE53_001964	0.29	-0.6
2,216,755	-		ABIE53_001964	0.29	+0.9
2,216,756	+		ABIE53_001964	0.29	+1.5
2,216,756	+		ABIE53_001964	0.29	+1.2
2,216,943	+		ABIE53_001964	0.46	-0.8
2,216,944	-		ABIE53_001964	0.46	+0.1
2,216,944	-		ABIE53_001964	0.46	-0.2
2,216,944	-		ABIE53_001964	0.46	+0.1
2,216,988	+		ABIE53_001964	0.50	-1.4
2,217,009	+		ABIE53_001964	0.51	+0.3
2,217,009	+		ABIE53_001964	0.51	+2.3
2,217,009	+		ABIE53_001964	0.51	-0.3
2,217,009	+		ABIE53_001964	0.51	+0.7
2,217,009	+		ABIE53_001964	0.51	+0.7
2,217,009	+		ABIE53_001964	0.51	+1.9
2,217,009	+		ABIE53_001964	0.51	-2.2
2,217,009	+		ABIE53_001964	0.51	+0.7
2,217,010	-		ABIE53_001964	0.52	+0.9
2,217,010	-		ABIE53_001964	0.52	+1.1
2,217,010	-		ABIE53_001964	0.52	+0.4
2,217,010	-		ABIE53_001964	0.52	-1.7
2,217,010	-		ABIE53_001964	0.52	-0.5
2,217,010	-		ABIE53_001964	0.52	-0.3
2,217,010	-		ABIE53_001964	0.52	+1.9
2,217,010	-		ABIE53_001964	0.52	+0.1
2,217,010	-		ABIE53_001964	0.52	-0.4
2,217,010	-		ABIE53_001964	0.52	-0.8
2,217,010	-		ABIE53_001964	0.52	-0.1
2,217,010	-		ABIE53_001964	0.52	+0.9
2,217,010	-		ABIE53_001964	0.52	-0.5
2,217,010	-		ABIE53_001964	0.52	-0.4
2,217,010	-		ABIE53_001964	0.52	+0.1
2,217,010	-		ABIE53_001964	0.52	+0.1
2,217,010	-		ABIE53_001964	0.52	+2.1
2,217,010	-		ABIE53_001964	0.52	-0.3
2,217,010	-		ABIE53_001964	0.52	-1.7
2,217,010	-		ABIE53_001964	0.52	-1.4
2,217,011	+		ABIE53_001964	0.52	-0.1
2,217,011	+		ABIE53_001964	0.52	-1.3
2,217,012	-		ABIE53_001964	0.52	-0.2
2,217,012	-		ABIE53_001964	0.52	+0.1
2,217,580	-				+0.0
2,217,781	+		ABIE53_001965	0.33	-0.9
2,217,781	+		ABIE53_001965	0.33	+0.2
2,217,781	+		ABIE53_001965	0.33	-0.3
2,217,781	+		ABIE53_001965	0.33	-1.9
2,217,781	+		ABIE53_001965	0.33	-0.6
2,217,782	-		ABIE53_001965	0.33	+0.2
2,217,782	-		ABIE53_001965	0.33	-2.0
2,218,062	+		ABIE53_001965	0.89	-0.7
2,218,063	-		ABIE53_001965	0.90	+0.4
2,218,063	-		ABIE53_001965	0.90	-0.1
2,218,063	-		ABIE53_001965	0.90	-0.9
2,218,095	+				-0.9
2,218,114	+				-0.3
2,218,114	+				-0.8
2,218,114	+				-0.4
2,218,114	+				-0.0
2,218,114	+				-0.6
2,218,114	+				-0.2
2,218,114	+				+3.2
2,218,114	+				-1.1
2,218,114	+				-0.6
2,218,114	+				+1.7
2,218,114	+				+0.3
2,218,114	+				-0.8
2,218,114	+				+1.2
2,218,114	+				-1.0
2,218,115	-				+0.3
2,218,115	-				-1.1
2,218,115	-				+0.4
2,218,115	-				+0.2
2,218,115	-				+1.5
2,218,116	+				+1.5
2,218,116	+				+0.7
2,218,116	+				-0.4
2,218,116	+				-1.6
2,218,117	-				-0.6
2,218,163	-				+0.5
2,218,169	+				-1.1
2,218,169	+				-0.7
2,218,170	-				-0.6
2,218,170	-				+0.6
2,218,170	-				+1.9
2,218,180	+				-1.1
2,218,201	+				+2.6
2,218,201	+				+1.5
2,218,202	-				-1.3
2,218,241	+				-0.1
2,218,241	+				+0.3
2,218,241	+				-0.9
2,218,241	+				-0.1
2,218,241	+				-0.4
2,218,241	+				-1.7
2,218,242	-				-0.8
2,218,242	-				-0.8
2,218,242	-				-0.7
2,218,242	-				-1.7
2,218,242	-				-0.8
2,218,284	+				-1.3
2,218,285	-				-0.9
2,218,458	+				-1.3
2,218,494	+				-0.4
2,218,494	+				+0.1
2,218,495	-				+2.2
2,218,495	-				-0.1
2,218,500	+				-2.3
2,218,500	+				-2.9
2,218,539	+		ABIE53_001966	0.11	-1.2
2,218,794	+		ABIE53_001966	0.33	-1.1
2,218,850	+		ABIE53_001966	0.37	-0.1
2,218,850	+		ABIE53_001966	0.37	-1.1
2,218,850	+		ABIE53_001966	0.37	+0.3
2,218,850	+		ABIE53_001966	0.37	-1.4
2,218,850	+		ABIE53_001966	0.37	-0.4
2,218,850	+		ABIE53_001966	0.37	-1.7
2,218,851	-		ABIE53_001966	0.37	-1.1
2,218,870	-		ABIE53_001966	0.39	+1.5
2,218,870	-		ABIE53_001966	0.39	-1.8
2,218,912	-		ABIE53_001966	0.43	-0.6
2,218,991	+		ABIE53_001966	0.50	-1.3
2,218,992	-		ABIE53_001966	0.50	-0.5
2,219,001	+		ABIE53_001966	0.50	-1.3
2,219,001	+		ABIE53_001966	0.50	+1.9
2,219,001	+		ABIE53_001966	0.50	-1.0
2,219,001	+		ABIE53_001966	0.50	+0.6
2,219,001	+		ABIE53_001966	0.50	+0.9
2,219,001	+		ABIE53_001966	0.50	-0.7
2,219,001	+		ABIE53_001966	0.50	+0.5
2,219,001	+		ABIE53_001966	0.50	-1.1
2,219,002	-		ABIE53_001966	0.50	-0.9
2,219,002	-		ABIE53_001966	0.50	-1.6
2,219,002	-		ABIE53_001966	0.50	+0.6
2,219,002	-		ABIE53_001966	0.50	-0.1
2,219,002	-		ABIE53_001966	0.50	-0.4
2,219,002	-		ABIE53_001966	0.50	-0.6
2,219,002	-		ABIE53_001966	0.50	-0.1