Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001309

Experiment: D-Trehalose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose (C)
1,461,534	+				-2.7
1,461,534	+				+3.1
1,461,535	-				+1.3
1,461,554	+				+1.1
1,461,554	+				+1.5
1,461,554	+				-1.2
1,461,554	+				+0.9
1,461,565	+				-0.2
1,461,566	-				+2.3
1,461,566	-				-0.5
1,461,566	-				+0.0
1,461,757	+				+1.0
1,461,757	+				-0.9
1,461,757	+				-0.3
1,461,758	-				-0.3
1,461,758	-				+1.0
1,461,759	+				+1.8
1,461,759	+				-0.8
1,461,760	-				+0.5
1,461,760	-				+0.0
1,461,760	-				-2.5
1,461,760	-				+0.2
1,461,844	+				+0.2
1,461,844	+				+0.2
1,461,844	+				-0.1
1,461,866	+				-0.1
1,461,867	-				+0.4
1,461,933	+				-1.4
1,461,934	-				-0.0
1,462,041	+		ABIE53_001307	0.56	-1.2
1,462,044	+		ABIE53_001307	0.58	-0.2
1,462,044	+		ABIE53_001307	0.58	-0.4
1,462,044	+		ABIE53_001307	0.58	+1.4
1,462,044	+		ABIE53_001307	0.58	-0.4
1,462,044	+		ABIE53_001307	0.58	+0.8
1,462,045	-		ABIE53_001307	0.59	-0.3
1,462,045	-		ABIE53_001307	0.59	+0.9
1,462,045	-		ABIE53_001307	0.59	-0.2
1,462,045	-		ABIE53_001307	0.59	+0.9
1,462,045	-		ABIE53_001307	0.59	-0.8
1,462,045	-		ABIE53_001307	0.59	-0.4
1,462,045	-		ABIE53_001307	0.59	-0.5
1,462,047	+		ABIE53_001307	0.60	-0.4
1,462,047	+		ABIE53_001307	0.60	-0.6
1,462,047	+		ABIE53_001307	0.60	-0.5
1,462,048	-		ABIE53_001307	0.61	-0.5
1,462,074	+		ABIE53_001307	0.78	+1.8
1,462,077	+		ABIE53_001307	0.80	-0.0
1,462,077	+		ABIE53_001307	0.80	+0.6
1,462,078	-		ABIE53_001307	0.81	-1.2
1,462,093	-				+0.9
1,462,093	-				-0.7
1,462,093	-				+1.2
1,462,095	+				+0.3
1,462,095	+				+0.1
1,462,095	+				-0.1
1,462,096	-				+0.1
1,462,096	-				-1.2
1,462,096	-				+0.4
1,462,096	-				+2.8
1,462,096	-				+0.8
1,462,096	-				-0.6
1,462,096	-				+1.6
1,462,096	-				-0.9
1,462,098	+				-1.2
1,462,099	-				-1.0
1,462,099	-				-0.2
1,462,099	-				-0.4
1,462,105	-				-0.1
1,462,182	+				-1.5
1,462,182	+				-0.7
1,462,183	-				-1.2
1,462,208	+		ABIE53_001308	0.19	+0.2
1,462,209	-		ABIE53_001308	0.20	+0.2
1,462,379	+				+1.8
1,462,379	+				-0.2
1,462,380	-				+0.8
1,462,380	-				-2.9
1,462,380	-				+1.0
1,462,393	+				-0.2
1,462,393	+				+0.9
1,462,393	+				-1.2
1,462,394	-				-0.2
1,462,395	+				-0.1
1,462,395	+				+1.1
1,462,396	-				+0.4
1,462,396	-				-0.7
1,462,396	-				-0.0
1,462,591	+				-1.5
1,462,591	+				-0.7
1,462,591	+				-0.7
1,462,591	+				-0.1
1,462,591	+				+1.8
1,462,592	-				+1.2
1,462,592	-				+0.9
1,462,592	-				-1.0
1,462,592	-				-0.2
1,462,640	+				-0.7
1,462,641	-				+0.8
1,462,642	+				+1.8
1,462,642	+				-0.3
1,462,642	+				-0.7
1,462,642	+				-1.9
1,462,642	+				-0.4
1,462,643	-				+1.8
1,462,643	-				+0.2
1,462,643	-				+0.6
1,462,681	+		ABIE53_001309	0.13	+0.4
1,462,681	+		ABIE53_001309	0.13	+1.5
1,462,681	+		ABIE53_001309	0.13	-0.5
1,462,681	+		ABIE53_001309	0.13	+0.3
1,462,681	+		ABIE53_001309	0.13	-0.7
1,462,681	+		ABIE53_001309	0.13	-0.4
1,462,681	+		ABIE53_001309	0.13	+0.8
1,462,681	+		ABIE53_001309	0.13	+0.6
1,462,681	+		ABIE53_001309	0.13	-2.5
1,462,681	+		ABIE53_001309	0.13	-0.2
1,462,682	-		ABIE53_001309	0.13	+0.0
1,462,682	-		ABIE53_001309	0.13	+0.8
1,462,682	-		ABIE53_001309	0.13	+1.0
1,462,700	+		ABIE53_001309	0.14	+0.6
1,462,700	+		ABIE53_001309	0.14	-0.1
1,462,701	-		ABIE53_001309	0.14	+1.4
1,462,701	-		ABIE53_001309	0.14	+0.5
1,462,702	+		ABIE53_001309	0.14	-0.0
1,462,702	+		ABIE53_001309	0.14	-1.7
1,462,702	+		ABIE53_001309	0.14	+2.2
1,462,702	+		ABIE53_001309	0.14	+0.3
1,462,838	+		ABIE53_001309	0.25	+2.1
1,462,838	+		ABIE53_001309	0.25	+0.2
1,462,838	+		ABIE53_001309	0.25	-0.8
1,462,839	-		ABIE53_001309	0.25	+0.3
1,462,839	-		ABIE53_001309	0.25	-1.0
1,462,894	+		ABIE53_001309	0.29	-0.3
1,463,005	+		ABIE53_001309	0.37	+1.5
1,463,006	-		ABIE53_001309	0.38	-1.0
1,463,032	+		ABIE53_001309	0.40	+3.4
1,463,032	+		ABIE53_001309	0.40	+0.9
1,463,032	+		ABIE53_001309	0.40	+0.1
1,463,033	-		ABIE53_001309	0.40	-0.3
1,463,033	-		ABIE53_001309	0.40	+0.3
1,463,044	+		ABIE53_001309	0.40	+1.2
1,463,045	-		ABIE53_001309	0.41	+1.0
1,463,045	-		ABIE53_001309	0.41	-1.0
1,463,185	+		ABIE53_001309	0.51	+0.2
1,463,186	-		ABIE53_001309	0.51	-0.6
1,463,186	-		ABIE53_001309	0.51	-0.5
1,463,186	-		ABIE53_001309	0.51	-0.3
1,463,186	-		ABIE53_001309	0.51	+0.8
1,463,186	-		ABIE53_001309	0.51	-0.3
1,463,186	-		ABIE53_001309	0.51	-2.5
1,463,186	-		ABIE53_001309	0.51	-0.8
1,463,244	-		ABIE53_001309	0.56	-0.6
1,463,244	-		ABIE53_001309	0.56	-0.5
1,463,704	+				-0.2
1,463,704	+				-0.7
1,463,704	+				-1.0
1,463,704	+				+0.3
1,463,704	+				+1.2
1,463,705	-				-1.0
1,463,705	-				-1.0
1,463,705	-				+0.2
1,463,705	-				-0.2
1,463,705	-				-1.9
1,463,705	-				-1.8
1,463,710	+				-0.8
1,463,710	+				-0.8
1,463,710	+				+1.3
1,463,710	+				-0.3
1,463,710	+				-2.0
1,463,710	+				+0.1
1,463,710	+				-1.1
1,463,711	-				-0.2
1,463,711	-				-0.2
1,463,711	-				-0.8
1,463,711	-				+1.2
1,463,711	-				-1.0
1,463,711	-				+0.2
1,463,711	-				+2.8
1,463,711	-				-0.7
1,463,711	-				-0.9
1,463,719	+				+1.8
1,463,719	+				-0.9
1,463,954	+				-0.1
1,463,954	+				+0.9
1,463,954	+				-1.9
1,463,955	-				-0.1
1,463,955	-				-0.4
1,463,955	-				+1.5
1,463,955	-				+0.8
1,463,955	-				-1.1
1,464,065	+				-1.2
1,464,065	+				+0.8
1,464,066	-				+0.7
1,464,066	-				+0.2
1,464,066	-				-0.1
1,464,133	+				+0.3
1,464,133	+				+0.4
1,464,385	+		ABIE53_001310	0.36	-0.0
1,464,385	+		ABIE53_001310	0.36	-0.1
1,464,385	+		ABIE53_001310	0.36	-0.7
1,464,386	-		ABIE53_001310	0.37	+0.7
1,464,386	-		ABIE53_001310	0.37	-1.7
1,464,481	+		ABIE53_001310	0.54	-0.3
1,464,481	+		ABIE53_001310	0.54	+0.4
1,464,481	+		ABIE53_001310	0.54	-0.6
1,464,481	+		ABIE53_001310	0.54	-1.4
1,464,481	+		ABIE53_001310	0.54	+0.8
1,464,482	-		ABIE53_001310	0.55	-0.5
1,464,482	-		ABIE53_001310	0.55	+0.9
1,464,482	-		ABIE53_001310	0.55	+0.2
1,464,482	-		ABIE53_001310	0.55	+0.8
1,464,482	-		ABIE53_001310	0.55	-0.4
1,464,482	-		ABIE53_001310	0.55	-0.7
1,464,482	-		ABIE53_001310	0.55	+1.2
1,464,482	-		ABIE53_001310	0.55	-0.7
1,464,482	-		ABIE53_001310	0.55	+3.4
1,464,763	+				-0.4
1,464,763	+				-1.9
1,464,764	-				+2.8