Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0748 and BT0749 are separated by 327 nucleotides BT0749 and BT0750 are separated by 35 nucleotides BT0750 and BT0751 are separated by 7 nucleotides
BT0748: BT0748 - ribose-phosphate pyrophosphokinase (NCBI ptt file), at 926,690 to 927,607
BT0748
BT0749: BT0749 - putative two-component system sensor histidine kinase (NCBI ptt file), at 927,935 to 932,182
BT0749
BT0750: BT0750 - hypothetical protein (NCBI ptt file), at 932,218 to 932,946
BT0750
BT0751: BT0751 - putative efflux pump component protein (NCBI ptt file), at 932,954 to 934,390
BT0751
Position (kb) 927
928
929
930
931
932
933 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 927.890 kb on - strand at 927.894 kb on + strand at 927.993 kb on - strand at 928.144 kb on + strand at 928.379 kb on + strand, within BT0749 at 928.421 kb on - strand, within BT0749 at 928.466 kb on + strand, within BT0749 at 928.466 kb on + strand, within BT0749 at 928.467 kb on - strand, within BT0749 at 928.551 kb on - strand, within BT0749 at 928.669 kb on + strand, within BT0749 at 928.791 kb on + strand, within BT0749 at 928.953 kb on - strand, within BT0749 at 929.331 kb on + strand, within BT0749 at 929.484 kb on + strand, within BT0749 at 929.572 kb on + strand, within BT0749 at 929.615 kb on - strand, within BT0749 at 929.615 kb on - strand at 929.724 kb on - strand, within BT0749 at 930.017 kb on + strand, within BT0749 at 930.114 kb on + strand, within BT0749 at 930.116 kb on + strand, within BT0749 at 930.258 kb on + strand, within BT0749 at 930.268 kb on - strand, within BT0749 at 930.581 kb on - strand, within BT0749 at 930.902 kb on + strand, within BT0749 at 930.913 kb on + strand at 931.161 kb on - strand, within BT0749 at 931.368 kb on - strand, within BT0749 at 931.502 kb on - strand, within BT0749 at 931.561 kb on + strand, within BT0749 at 931.643 kb on + strand, within BT0749 at 931.797 kb on + strand at 931.905 kb on + strand at 932.413 kb on - strand, within BT0750 at 932.455 kb on + strand, within BT0750 at 932.706 kb on + strand, within BT0750 at 932.954 kb on - strand at 933.026 kb on + strand at 933.027 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 927,890 - -1.1 927,894 + -2.5 927,993 - -0.3 928,144 + -1.1 928,379 + BT0749 0.10 +0.6 928,421 - BT0749 0.11 +0.4 928,466 + BT0749 0.12 -1.1 928,466 + BT0749 0.12 -1.4 928,467 - BT0749 0.13 -2.7 928,551 - BT0749 0.15 -0.2 928,669 + BT0749 0.17 -1.3 928,791 + BT0749 0.20 +3.3 928,953 - BT0749 0.24 +0.4 929,331 + BT0749 0.33 -0.7 929,484 + BT0749 0.36 -1.2 929,572 + BT0749 0.39 -0.7 929,615 - BT0749 0.40 +0.1 929,615 - -1.5 929,724 - BT0749 0.42 -0.4 930,017 + BT0749 0.49 -0.3 930,114 + BT0749 0.51 -1.6 930,116 + BT0749 0.51 +0.5 930,258 + BT0749 0.55 -3.9 930,268 - BT0749 0.55 +0.6 930,581 - BT0749 0.62 -0.3 930,902 + BT0749 0.70 +0.5 930,913 + +0.9 931,161 - BT0749 0.76 -1.5 931,368 - BT0749 0.81 -1.1 931,502 - BT0749 0.84 +0.9 931,561 + BT0749 0.85 -1.0 931,643 + BT0749 0.87 -0.7 931,797 + -0.6 931,905 + +0.3 932,413 - BT0750 0.27 +0.5 932,455 + BT0750 0.33 -2.6 932,706 + BT0750 0.67 -1.7 932,954 - +0.0 933,026 + +1.1 933,027 - +0.1
Or see this region's nucleotide sequence