Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0198 and BT0199 are separated by 75 nucleotides BT0199 and BT0200 are separated by 253 nucleotides BT0200 and BT0201 are separated by 9 nucleotides
BT0198: BT0198 - hypothetical protein (NCBI ptt file), at 212,369 to 214,273
BT0198
BT0199: BT0199 - conserved hypothetical protein (NCBI ptt file), at 214,349 to 214,840
BT0199
BT0200: BT0200 - ATP phosphoribosyltransferase (NCBI ptt file), at 215,094 to 215,945
BT0200
BT0201: BT0201 - histidinol dehydrogenase (NCBI ptt file), at 215,955 to 217,241
BT0201
Position (kb) 215
216 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 214.097 kb on + strand at 214.215 kb on + strand at 214.348 kb on + strand at 214.469 kb on - strand, within BT0199 at 214.630 kb on + strand, within BT0199 at 214.702 kb on + strand, within BT0199 at 214.728 kb on + strand, within BT0199 at 214.732 kb on + strand, within BT0199 at 214.751 kb on + strand, within BT0199 at 214.922 kb on - strand at 214.988 kb on + strand at 214.998 kb on - strand at 215.004 kb on - strand at 215.190 kb on - strand, within BT0200 at 215.230 kb on + strand, within BT0200 at 215.495 kb on - strand, within BT0200 at 215.495 kb on - strand, within BT0200 at 215.495 kb on - strand, within BT0200 at 215.577 kb on - strand, within BT0200 at 215.612 kb on - strand, within BT0200 at 215.674 kb on + strand, within BT0200 at 215.756 kb on + strand, within BT0200 at 215.771 kb on - strand, within BT0200 at 215.802 kb on - strand, within BT0200 at 215.805 kb on - strand, within BT0200 at 215.910 kb on - strand at 215.943 kb on + strand at 216.058 kb on + strand at 216.059 kb on - strand at 216.158 kb on - strand, within BT0201 at 216.204 kb on - strand, within BT0201 at 216.309 kb on - strand, within BT0201 at 216.330 kb on - strand, within BT0201 at 216.455 kb on + strand, within BT0201 at 216.455 kb on - strand, within BT0201 at 216.494 kb on - strand, within BT0201 at 216.494 kb on - strand, within BT0201 at 216.494 kb on - strand, within BT0201 at 216.534 kb on + strand, within BT0201 at 216.535 kb on - strand, within BT0201 at 216.629 kb on - strand, within BT0201 at 216.713 kb on - strand, within BT0201 at 216.787 kb on + strand, within BT0201 at 216.799 kb on + strand, within BT0201 at 216.800 kb on - strand, within BT0201
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 214,097 + -0.1 214,215 + -1.7 214,348 + -2.4 214,469 - BT0199 0.24 -1.3 214,630 + BT0199 0.57 -1.1 214,702 + BT0199 0.72 -0.3 214,728 + BT0199 0.77 -0.3 214,732 + BT0199 0.78 -1.1 214,751 + BT0199 0.82 +0.1 214,922 - -2.5 214,988 + -3.3 214,998 - -2.7 215,004 - -0.5 215,190 - BT0200 0.11 -2.6 215,230 + BT0200 0.16 -1.2 215,495 - BT0200 0.47 -3.8 215,495 - BT0200 0.47 -2.9 215,495 - BT0200 0.47 -2.8 215,577 - BT0200 0.57 -1.5 215,612 - BT0200 0.61 -2.5 215,674 + BT0200 0.68 -4.1 215,756 + BT0200 0.78 -2.4 215,771 - BT0200 0.79 -1.6 215,802 - BT0200 0.83 -2.2 215,805 - BT0200 0.83 -2.9 215,910 - -3.0 215,943 + +0.1 216,058 + -2.4 216,059 - -2.9 216,158 - BT0201 0.16 -2.9 216,204 - BT0201 0.19 -3.6 216,309 - BT0201 0.28 -3.6 216,330 - BT0201 0.29 -3.0 216,455 + BT0201 0.39 -2.7 216,455 - BT0201 0.39 -3.3 216,494 - BT0201 0.42 -1.5 216,494 - BT0201 0.42 -2.4 216,494 - BT0201 0.42 -2.4 216,534 + BT0201 0.45 -0.5 216,535 - BT0201 0.45 -0.7 216,629 - BT0201 0.52 +0.5 216,713 - BT0201 0.59 -2.0 216,787 + BT0201 0.65 -1.3 216,799 + BT0201 0.66 -1.6 216,800 - BT0201 0.66 -2.7
Or see this region's nucleotide sequence