Strain Fitness in Rahnella sp. WP5 around EX31_RS19985

Experiment: Ammonium chloride (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19980 and EX31_RS19985 are separated by 4 nucleotidesEX31_RS19985 and EX31_RS19990 overlap by 14 nucleotidesEX31_RS19990 and EX31_RS19995 are separated by 32 nucleotides EX31_RS19980: EX31_RS19980 - transcriptional regulator CsgD, at 626,536 to 627,186 _RS19980 EX31_RS19985: EX31_RS19985 - curli production assembly/transport protein CsgE, at 627,191 to 627,586 _RS19985 EX31_RS19990: EX31_RS19990 - curli production assembly/transport protein CsgF, at 627,573 to 628,037 _RS19990 EX31_RS19995: EX31_RS19995 - curli production assembly/transport protein CsgG, at 628,070 to 628,903 _RS19995 Position (kb) 627 628Strain fitness (log2 ratio) -2 -1 0 1 2at 626.225 kb on + strandat 626.226 kb on - strandat 626.236 kb on + strandat 626.236 kb on + strandat 626.268 kb on + strandat 626.268 kb on + strandat 626.323 kb on + strandat 626.432 kb on + strandat 626.441 kb on - strandat 626.467 kb on + strandat 626.486 kb on - strandat 626.595 kb on - strandat 626.664 kb on + strand, within EX31_RS19980at 626.699 kb on + strand, within EX31_RS19980at 626.789 kb on + strand, within EX31_RS19980at 626.812 kb on + strand, within EX31_RS19980at 626.923 kb on + strand, within EX31_RS19980at 626.923 kb on + strand, within EX31_RS19980at 626.923 kb on + strand, within EX31_RS19980at 626.924 kb on - strand, within EX31_RS19980at 626.924 kb on - strand, within EX31_RS19980at 626.924 kb on - strand, within EX31_RS19980at 626.924 kb on - strand, within EX31_RS19980at 626.947 kb on + strand, within EX31_RS19980at 626.947 kb on + strand, within EX31_RS19980at 626.947 kb on + strand, within EX31_RS19980at 626.947 kb on + strand, within EX31_RS19980at 627.036 kb on - strand, within EX31_RS19980at 627.110 kb on - strand, within EX31_RS19980at 627.197 kb on - strandat 627.197 kb on - strandat 627.204 kb on + strandat 627.235 kb on - strand, within EX31_RS19985at 627.270 kb on + strand, within EX31_RS19985at 627.270 kb on + strand, within EX31_RS19985at 627.270 kb on + strand, within EX31_RS19985at 627.270 kb on + strand, within EX31_RS19985at 627.270 kb on + strand, within EX31_RS19985at 627.271 kb on - strand, within EX31_RS19985at 627.271 kb on - strand, within EX31_RS19985at 627.271 kb on - strand, within EX31_RS19985at 627.271 kb on - strand, within EX31_RS19985at 627.427 kb on - strand, within EX31_RS19985at 627.443 kb on + strand, within EX31_RS19985at 627.478 kb on + strand, within EX31_RS19985at 627.510 kb on + strand, within EX31_RS19985at 627.510 kb on + strand, within EX31_RS19985at 627.511 kb on - strand, within EX31_RS19985at 627.522 kb on + strand, within EX31_RS19985at 627.537 kb on + strand, within EX31_RS19985at 627.585 kb on - strandat 627.599 kb on + strandat 627.600 kb on - strandat 627.600 kb on - strandat 627.600 kb on - strandat 627.617 kb on + strandat 627.617 kb on + strandat 627.618 kb on - strandat 627.738 kb on - strand, within EX31_RS19990at 627.738 kb on - strand, within EX31_RS19990at 627.780 kb on + strand, within EX31_RS19990at 627.780 kb on + strand, within EX31_RS19990at 627.780 kb on + strand, within EX31_RS19990at 627.781 kb on - strand, within EX31_RS19990at 627.781 kb on - strand, within EX31_RS19990at 627.781 kb on - strand, within EX31_RS19990at 627.782 kb on + strand, within EX31_RS19990at 627.782 kb on + strand, within EX31_RS19990at 627.798 kb on + strand, within EX31_RS19990at 627.799 kb on - strand, within EX31_RS19990at 628.002 kb on - strandat 628.079 kb on + strandat 628.079 kb on + strandat 628.079 kb on + strandat 628.079 kb on + strandat 628.080 kb on - strandat 628.080 kb on - strandat 628.080 kb on - strandat 628.080 kb on - strandat 628.080 kb on - strandat 628.083 kb on + strandat 628.083 kb on + strandat 628.083 kb on + strandat 628.083 kb on + strandat 628.084 kb on - strandat 628.084 kb on - strandat 628.084 kb on - strandat 628.084 kb on - strandat 628.086 kb on + strandat 628.087 kb on - strandat 628.155 kb on + strand, within EX31_RS19995at 628.155 kb on + strand, within EX31_RS19995at 628.155 kb on + strand, within EX31_RS19995at 628.156 kb on - strand, within EX31_RS19995at 628.175 kb on + strand, within EX31_RS19995at 628.175 kb on + strand, within EX31_RS19995at 628.175 kb on + strand, within EX31_RS19995at 628.176 kb on - strand, within EX31_RS19995at 628.176 kb on - strand, within EX31_RS19995at 628.176 kb on - strand, within EX31_RS19995at 628.176 kb on - strand, within EX31_RS19995at 628.176 kb on - strand, within EX31_RS19995at 628.178 kb on - strand, within EX31_RS19995at 628.178 kb on - strand, within EX31_RS19995at 628.178 kb on - strand, within EX31_RS19995at 628.265 kb on + strand, within EX31_RS19995at 628.277 kb on - strand, within EX31_RS19995at 628.439 kb on - strand, within EX31_RS19995at 628.464 kb on + strand, within EX31_RS19995at 628.464 kb on + strand, within EX31_RS19995at 628.465 kb on - strand, within EX31_RS19995at 628.474 kb on + strand, within EX31_RS19995at 628.475 kb on - strand, within EX31_RS19995at 628.475 kb on - strand, within EX31_RS19995at 628.486 kb on - strand, within EX31_RS19995at 628.510 kb on + strand, within EX31_RS19995at 628.511 kb on - strand, within EX31_RS19995at 628.569 kb on - strand, within EX31_RS19995at 628.585 kb on - strand, within EX31_RS19995

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; no shaking
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626,225 + -0.9
626,226 - +1.4
626,236 + -1.5
626,236 + +0.8
626,268 + +0.8
626,268 + -0.2
626,323 + +0.1
626,432 + -1.9
626,441 - +0.6
626,467 + +0.7
626,486 - -0.8
626,595 - -1.9
626,664 + EX31_RS19980 0.20 -0.6
626,699 + EX31_RS19980 0.25 +0.5
626,789 + EX31_RS19980 0.39 -0.1
626,812 + EX31_RS19980 0.42 +0.3
626,923 + EX31_RS19980 0.59 -0.3
626,923 + EX31_RS19980 0.59 -2.4
626,923 + EX31_RS19980 0.59 -1.3
626,924 - EX31_RS19980 0.60 -0.5
626,924 - EX31_RS19980 0.60 -0.1
626,924 - EX31_RS19980 0.60 +0.6
626,924 - EX31_RS19980 0.60 +0.5
626,947 + EX31_RS19980 0.63 +0.7
626,947 + EX31_RS19980 0.63 +0.8
626,947 + EX31_RS19980 0.63 -0.3
626,947 + EX31_RS19980 0.63 +2.1
627,036 - EX31_RS19980 0.77 +0.2
627,110 - EX31_RS19980 0.88 +0.4
627,197 - +1.1
627,197 - +0.6
627,204 + +0.3
627,235 - EX31_RS19985 0.11 +0.1
627,270 + EX31_RS19985 0.20 +0.6
627,270 + EX31_RS19985 0.20 -0.4
627,270 + EX31_RS19985 0.20 -0.9
627,270 + EX31_RS19985 0.20 +0.1
627,270 + EX31_RS19985 0.20 -0.1
627,271 - EX31_RS19985 0.20 +1.7
627,271 - EX31_RS19985 0.20 +0.4
627,271 - EX31_RS19985 0.20 -0.9
627,271 - EX31_RS19985 0.20 -0.7
627,427 - EX31_RS19985 0.60 +0.7
627,443 + EX31_RS19985 0.64 -0.6
627,478 + EX31_RS19985 0.72 -0.1
627,510 + EX31_RS19985 0.81 -0.7
627,510 + EX31_RS19985 0.81 -0.4
627,511 - EX31_RS19985 0.81 +0.6
627,522 + EX31_RS19985 0.84 -0.6
627,537 + EX31_RS19985 0.87 -0.0
627,585 - -0.2
627,599 + +0.0
627,600 - +0.3
627,600 - -2.1
627,600 - +0.8
627,617 + -0.6
627,617 + +0.6
627,618 - -0.4
627,738 - EX31_RS19990 0.35 +0.8
627,738 - EX31_RS19990 0.35 +1.5
627,780 + EX31_RS19990 0.45 +0.7
627,780 + EX31_RS19990 0.45 -0.4
627,780 + EX31_RS19990 0.45 +2.1
627,781 - EX31_RS19990 0.45 +0.6
627,781 - EX31_RS19990 0.45 +1.2
627,781 - EX31_RS19990 0.45 +0.3
627,782 + EX31_RS19990 0.45 +0.4
627,782 + EX31_RS19990 0.45 +0.4
627,798 + EX31_RS19990 0.48 +1.5
627,799 - EX31_RS19990 0.49 +0.8
628,002 - +0.3
628,079 + +0.0
628,079 + -0.8
628,079 + +0.0
628,079 + -0.7
628,080 - +1.3
628,080 - +1.0
628,080 - +0.4
628,080 - +0.2
628,080 - +0.2
628,083 + +0.3
628,083 + +0.4
628,083 + +2.4
628,083 + -1.3
628,084 - -0.7
628,084 - +0.3
628,084 - -1.6
628,084 - +1.1
628,086 + -0.4
628,087 - -0.1
628,155 + EX31_RS19995 0.10 +0.3
628,155 + EX31_RS19995 0.10 -1.0
628,155 + EX31_RS19995 0.10 +0.4
628,156 - EX31_RS19995 0.10 -0.5
628,175 + EX31_RS19995 0.13 +2.1
628,175 + EX31_RS19995 0.13 +0.2
628,175 + EX31_RS19995 0.13 -0.3
628,176 - EX31_RS19995 0.13 -0.1
628,176 - EX31_RS19995 0.13 -0.2
628,176 - EX31_RS19995 0.13 -1.0
628,176 - EX31_RS19995 0.13 +1.4
628,176 - EX31_RS19995 0.13 -1.0
628,178 - EX31_RS19995 0.13 +0.1
628,178 - EX31_RS19995 0.13 -1.6
628,178 - EX31_RS19995 0.13 -0.5
628,265 + EX31_RS19995 0.23 -0.2
628,277 - EX31_RS19995 0.25 -2.2
628,439 - EX31_RS19995 0.44 +0.6
628,464 + EX31_RS19995 0.47 -0.6
628,464 + EX31_RS19995 0.47 +2.1
628,465 - EX31_RS19995 0.47 -2.4
628,474 + EX31_RS19995 0.48 -0.5
628,475 - EX31_RS19995 0.49 +0.5
628,475 - EX31_RS19995 0.49 +0.3
628,486 - EX31_RS19995 0.50 -0.2
628,510 + EX31_RS19995 0.53 +0.8
628,511 - EX31_RS19995 0.53 +0.5
628,569 - EX31_RS19995 0.60 +0.1
628,585 - EX31_RS19995 0.62 -0.6

Or see this region's nucleotide sequence