Strain Fitness in Rahnella sp. WP5 around EX31_RS16275

Experiment: Ammonium chloride (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS16265 and EX31_RS16270 are separated by 99 nucleotidesEX31_RS16270 and EX31_RS16275 are separated by 57 nucleotidesEX31_RS16275 and EX31_RS16280 are separated by 130 nucleotides EX31_RS16265: EX31_RS16265 - hypothetical protein, at 4,024 to 4,389 _RS16265 EX31_RS16270: EX31_RS16270 - DUF945 domain-containing protein, at 4,489 to 5,313 _RS16270 EX31_RS16275: EX31_RS16275 - hypothetical protein, at 5,371 to 5,661 _RS16275 EX31_RS16280: EX31_RS16280 - lytic transglycosylase domain-containing protein, at 5,792 to 6,331 _RS16280 Position (kb) 5 6Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4.387 kb on + strandat 4.387 kb on + strandat 4.387 kb on + strandat 4.393 kb on + strandat 4.393 kb on + strandat 4.394 kb on - strandat 4.394 kb on - strandat 4.420 kb on + strandat 4.458 kb on + strandat 4.458 kb on + strandat 4.458 kb on + strandat 4.459 kb on - strandat 4.459 kb on - strandat 4.488 kb on + strandat 4.488 kb on + strandat 4.489 kb on - strandat 4.496 kb on + strandat 4.496 kb on + strandat 4.618 kb on + strand, within EX31_RS16270at 4.618 kb on + strand, within EX31_RS16270at 4.619 kb on - strand, within EX31_RS16270at 4.619 kb on - strand, within EX31_RS16270at 4.620 kb on + strand, within EX31_RS16270at 4.620 kb on + strand, within EX31_RS16270at 4.620 kb on + strand, within EX31_RS16270at 4.621 kb on - strand, within EX31_RS16270at 4.621 kb on - strand, within EX31_RS16270at 4.621 kb on - strand, within EX31_RS16270at 4.621 kb on - strand, within EX31_RS16270at 4.624 kb on + strand, within EX31_RS16270at 4.624 kb on + strand, within EX31_RS16270at 4.624 kb on + strand, within EX31_RS16270at 4.624 kb on + strand, within EX31_RS16270at 4.624 kb on + strand, within EX31_RS16270at 4.624 kb on + strand, within EX31_RS16270at 4.624 kb on + strand, within EX31_RS16270at 4.624 kb on + strand, within EX31_RS16270at 4.624 kb on + strand, within EX31_RS16270at 4.624 kb on + strand, within EX31_RS16270at 4.624 kb on + strand, within EX31_RS16270at 4.624 kb on + strand, within EX31_RS16270at 4.624 kb on + strand, within EX31_RS16270at 4.624 kb on + strand, within EX31_RS16270at 4.625 kb on - strand, within EX31_RS16270at 4.625 kb on - strand, within EX31_RS16270at 4.625 kb on - strand, within EX31_RS16270at 4.625 kb on - strand, within EX31_RS16270at 4.625 kb on - strand, within EX31_RS16270at 4.625 kb on - strand, within EX31_RS16270at 4.625 kb on - strand, within EX31_RS16270at 4.625 kb on - strand, within EX31_RS16270at 4.625 kb on - strand, within EX31_RS16270at 4.625 kb on - strand, within EX31_RS16270at 4.625 kb on - strand, within EX31_RS16270at 4.625 kb on - strand, within EX31_RS16270at 4.625 kb on - strand, within EX31_RS16270at 4.625 kb on - strand, within EX31_RS16270at 4.625 kb on - strand, within EX31_RS16270at 4.625 kb on - strand, within EX31_RS16270at 4.625 kb on - strand, within EX31_RS16270at 4.625 kb on - strand, within EX31_RS16270at 4.625 kb on - strand, within EX31_RS16270at 4.625 kb on - strand, within EX31_RS16270at 4.625 kb on - strand, within EX31_RS16270at 4.625 kb on - strand, within EX31_RS16270at 4.625 kb on - strand, within EX31_RS16270at 4.626 kb on + strand, within EX31_RS16270at 4.626 kb on + strand, within EX31_RS16270at 4.626 kb on + strand, within EX31_RS16270at 4.626 kb on + strand, within EX31_RS16270at 4.626 kb on + strand, within EX31_RS16270at 4.627 kb on - strand, within EX31_RS16270at 4.627 kb on - strand, within EX31_RS16270at 4.797 kb on + strand, within EX31_RS16270at 4.797 kb on + strand, within EX31_RS16270at 4.797 kb on + strand, within EX31_RS16270at 4.798 kb on - strand, within EX31_RS16270at 4.798 kb on - strand, within EX31_RS16270at 4.822 kb on + strand, within EX31_RS16270at 4.823 kb on - strand, within EX31_RS16270at 4.945 kb on + strand, within EX31_RS16270at 4.946 kb on - strand, within EX31_RS16270at 4.946 kb on - strand, within EX31_RS16270at 4.946 kb on - strand, within EX31_RS16270at 4.946 kb on - strand, within EX31_RS16270at 4.989 kb on + strand, within EX31_RS16270at 4.989 kb on + strand, within EX31_RS16270at 4.990 kb on - strand, within EX31_RS16270at 4.990 kb on - strand, within EX31_RS16270at 4.990 kb on - strand, within EX31_RS16270at 5.053 kb on + strand, within EX31_RS16270at 5.053 kb on + strand, within EX31_RS16270at 5.053 kb on + strand, within EX31_RS16270at 5.054 kb on - strand, within EX31_RS16270at 5.054 kb on - strand, within EX31_RS16270at 5.054 kb on - strand, within EX31_RS16270at 5.054 kb on - strand, within EX31_RS16270at 5.054 kb on - strand, within EX31_RS16270at 5.102 kb on + strand, within EX31_RS16270at 5.103 kb on - strand, within EX31_RS16270at 5.103 kb on - strand, within EX31_RS16270at 5.103 kb on - strand, within EX31_RS16270at 5.103 kb on - strand, within EX31_RS16270at 5.103 kb on - strand, within EX31_RS16270at 5.106 kb on - strand, within EX31_RS16270at 5.173 kb on - strand, within EX31_RS16270at 5.261 kb on + strandat 5.262 kb on - strandat 5.325 kb on + strandat 5.358 kb on + strandat 5.358 kb on + strandat 5.358 kb on + strandat 5.409 kb on + strand, within EX31_RS16275at 5.409 kb on + strand, within EX31_RS16275at 5.409 kb on + strand, within EX31_RS16275at 5.409 kb on + strand, within EX31_RS16275at 5.409 kb on + strand, within EX31_RS16275at 5.409 kb on + strand, within EX31_RS16275at 5.409 kb on + strand, within EX31_RS16275at 5.409 kb on + strand, within EX31_RS16275at 5.409 kb on + strand, within EX31_RS16275at 5.410 kb on - strand, within EX31_RS16275at 5.410 kb on - strand, within EX31_RS16275at 5.410 kb on - strand, within EX31_RS16275at 5.410 kb on - strand, within EX31_RS16275at 5.410 kb on - strand, within EX31_RS16275at 5.410 kb on - strand, within EX31_RS16275at 5.411 kb on + strand, within EX31_RS16275at 5.411 kb on + strand, within EX31_RS16275at 5.411 kb on + strand, within EX31_RS16275at 5.412 kb on - strand, within EX31_RS16275at 5.412 kb on - strand, within EX31_RS16275at 5.412 kb on - strand, within EX31_RS16275at 5.443 kb on + strand, within EX31_RS16275at 5.443 kb on + strand, within EX31_RS16275at 5.444 kb on - strand, within EX31_RS16275at 5.495 kb on + strand, within EX31_RS16275at 5.496 kb on - strand, within EX31_RS16275at 5.510 kb on - strand, within EX31_RS16275at 5.577 kb on + strand, within EX31_RS16275at 5.577 kb on + strand, within EX31_RS16275at 5.732 kb on + strandat 5.733 kb on - strandat 5.767 kb on - strandat 5.767 kb on - strandat 5.767 kb on - strandat 5.768 kb on + strandat 5.768 kb on + strandat 5.769 kb on - strandat 5.785 kb on + strandat 5.786 kb on - strandat 5.794 kb on - strandat 5.815 kb on + strandat 5.816 kb on - strandat 5.816 kb on - strandat 5.910 kb on + strand, within EX31_RS16280at 5.911 kb on - strand, within EX31_RS16280at 5.914 kb on + strand, within EX31_RS16280at 5.914 kb on + strand, within EX31_RS16280at 5.979 kb on + strand, within EX31_RS16280at 5.980 kb on - strand, within EX31_RS16280at 5.980 kb on - strand, within EX31_RS16280at 5.980 kb on - strand, within EX31_RS16280at 6.048 kb on + strand, within EX31_RS16280at 6.048 kb on + strand, within EX31_RS16280at 6.052 kb on + strand, within EX31_RS16280at 6.052 kb on + strand, within EX31_RS16280at 6.053 kb on - strand, within EX31_RS16280at 6.091 kb on + strand, within EX31_RS16280at 6.127 kb on + strand, within EX31_RS16280at 6.158 kb on - strand, within EX31_RS16280at 6.158 kb on - strand, within EX31_RS16280at 6.243 kb on + strand, within EX31_RS16280at 6.263 kb on - strand, within EX31_RS16280at 6.338 kb on - strandat 6.339 kb on + strandat 6.415 kb on + strandat 6.416 kb on - strandat 6.416 kb on - strandat 6.423 kb on + strandat 6.498 kb on + strandat 6.499 kb on - strandat 6.575 kb on - strandat 6.575 kb on - strandat 6.605 kb on + strandat 6.606 kb on - strandat 6.617 kb on + strandat 6.618 kb on - strandat 6.618 kb on - strandat 6.640 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; no shaking
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4,387 + -0.6
4,387 + +0.7
4,387 + +1.7
4,393 + +0.3
4,393 + -0.7
4,394 - -0.7
4,394 - +0.2
4,420 + -0.2
4,458 + +0.3
4,458 + -2.0
4,458 + +0.3
4,459 - +0.3
4,459 - -0.3
4,488 + +0.3
4,488 + +0.7
4,489 - -0.3
4,496 + -0.7
4,496 + +0.7
4,618 + EX31_RS16270 0.16 -0.7
4,618 + EX31_RS16270 0.16 -0.9
4,619 - EX31_RS16270 0.16 +1.0
4,619 - EX31_RS16270 0.16 +0.3
4,620 + EX31_RS16270 0.16 -1.6
4,620 + EX31_RS16270 0.16 +0.9
4,620 + EX31_RS16270 0.16 +0.4
4,621 - EX31_RS16270 0.16 -1.5
4,621 - EX31_RS16270 0.16 -1.1
4,621 - EX31_RS16270 0.16 +0.2
4,621 - EX31_RS16270 0.16 +0.6
4,624 + EX31_RS16270 0.16 +0.3
4,624 + EX31_RS16270 0.16 +0.1
4,624 + EX31_RS16270 0.16 -1.3
4,624 + EX31_RS16270 0.16 -0.0
4,624 + EX31_RS16270 0.16 -1.7
4,624 + EX31_RS16270 0.16 +1.9
4,624 + EX31_RS16270 0.16 +0.3
4,624 + EX31_RS16270 0.16 +0.6
4,624 + EX31_RS16270 0.16 +1.3
4,624 + EX31_RS16270 0.16 +0.2
4,624 + EX31_RS16270 0.16 +2.3
4,624 + EX31_RS16270 0.16 +2.3
4,624 + EX31_RS16270 0.16 +1.0
4,624 + EX31_RS16270 0.16 -1.2
4,625 - EX31_RS16270 0.16 +0.2
4,625 - EX31_RS16270 0.16 +1.3
4,625 - EX31_RS16270 0.16 +0.1
4,625 - EX31_RS16270 0.16 -1.4
4,625 - EX31_RS16270 0.16 -0.4
4,625 - EX31_RS16270 0.16 -0.7
4,625 - EX31_RS16270 0.16 -0.9
4,625 - EX31_RS16270 0.16 +0.3
4,625 - EX31_RS16270 0.16 +1.9
4,625 - EX31_RS16270 0.16 +1.5
4,625 - EX31_RS16270 0.16 -2.1
4,625 - EX31_RS16270 0.16 -1.2
4,625 - EX31_RS16270 0.16 -1.9
4,625 - EX31_RS16270 0.16 +0.3
4,625 - EX31_RS16270 0.16 +0.2
4,625 - EX31_RS16270 0.16 +0.4
4,625 - EX31_RS16270 0.16 +2.3
4,625 - EX31_RS16270 0.16 +0.0
4,625 - EX31_RS16270 0.16 -0.3
4,625 - EX31_RS16270 0.16 +0.5
4,625 - EX31_RS16270 0.16 +1.8
4,625 - EX31_RS16270 0.16 -0.4
4,625 - EX31_RS16270 0.16 -0.1
4,626 + EX31_RS16270 0.17 -0.4
4,626 + EX31_RS16270 0.17 -0.2
4,626 + EX31_RS16270 0.17 -1.2
4,626 + EX31_RS16270 0.17 -1.2
4,626 + EX31_RS16270 0.17 -0.0
4,627 - EX31_RS16270 0.17 +0.7
4,627 - EX31_RS16270 0.17 +0.3
4,797 + EX31_RS16270 0.37 -0.5
4,797 + EX31_RS16270 0.37 -0.9
4,797 + EX31_RS16270 0.37 -0.0
4,798 - EX31_RS16270 0.37 +0.3
4,798 - EX31_RS16270 0.37 +1.5
4,822 + EX31_RS16270 0.40 -0.6
4,823 - EX31_RS16270 0.40 -1.0
4,945 + EX31_RS16270 0.55 -0.6
4,946 - EX31_RS16270 0.55 +0.7
4,946 - EX31_RS16270 0.55 -1.3
4,946 - EX31_RS16270 0.55 -0.9
4,946 - EX31_RS16270 0.55 +1.5
4,989 + EX31_RS16270 0.61 +3.3
4,989 + EX31_RS16270 0.61 +0.5
4,990 - EX31_RS16270 0.61 +0.1
4,990 - EX31_RS16270 0.61 -1.0
4,990 - EX31_RS16270 0.61 -0.2
5,053 + EX31_RS16270 0.68 +0.1
5,053 + EX31_RS16270 0.68 +0.4
5,053 + EX31_RS16270 0.68 +0.8
5,054 - EX31_RS16270 0.68 +2.3
5,054 - EX31_RS16270 0.68 +0.3
5,054 - EX31_RS16270 0.68 +1.3
5,054 - EX31_RS16270 0.68 +1.5
5,054 - EX31_RS16270 0.68 +1.5
5,102 + EX31_RS16270 0.74 +0.6
5,103 - EX31_RS16270 0.74 +0.4
5,103 - EX31_RS16270 0.74 -0.3
5,103 - EX31_RS16270 0.74 +1.3
5,103 - EX31_RS16270 0.74 +0.0
5,103 - EX31_RS16270 0.74 +0.0
5,106 - EX31_RS16270 0.75 +1.0
5,173 - EX31_RS16270 0.83 +1.0
5,261 + -0.2
5,262 - +0.9
5,325 + +0.0
5,358 + -1.1
5,358 + -0.3
5,358 + -0.9
5,409 + EX31_RS16275 0.13 +0.0
5,409 + EX31_RS16275 0.13 -0.3
5,409 + EX31_RS16275 0.13 +0.9
5,409 + EX31_RS16275 0.13 -2.0
5,409 + EX31_RS16275 0.13 -0.7
5,409 + EX31_RS16275 0.13 +0.4
5,409 + EX31_RS16275 0.13 +1.3
5,409 + EX31_RS16275 0.13 +0.4
5,409 + EX31_RS16275 0.13 +1.1
5,410 - EX31_RS16275 0.13 +0.9
5,410 - EX31_RS16275 0.13 -1.3
5,410 - EX31_RS16275 0.13 -0.7
5,410 - EX31_RS16275 0.13 +1.0
5,410 - EX31_RS16275 0.13 +0.4
5,410 - EX31_RS16275 0.13 -1.4
5,411 + EX31_RS16275 0.14 -0.5
5,411 + EX31_RS16275 0.14 +0.6
5,411 + EX31_RS16275 0.14 -0.2
5,412 - EX31_RS16275 0.14 -1.8
5,412 - EX31_RS16275 0.14 +0.3
5,412 - EX31_RS16275 0.14 -0.6
5,443 + EX31_RS16275 0.25 +0.3
5,443 + EX31_RS16275 0.25 +0.9
5,444 - EX31_RS16275 0.25 +0.7
5,495 + EX31_RS16275 0.43 -1.1
5,496 - EX31_RS16275 0.43 -0.4
5,510 - EX31_RS16275 0.48 +1.3
5,577 + EX31_RS16275 0.71 +2.3
5,577 + EX31_RS16275 0.71 +1.4
5,732 + +1.0
5,733 - +0.8
5,767 - -0.6
5,767 - -0.0
5,767 - +3.1
5,768 + +0.1
5,768 + +1.1
5,769 - -0.3
5,785 + +1.5
5,786 - -1.6
5,794 - -1.2
5,815 + -0.1
5,816 - -1.6
5,816 - +0.7
5,910 + EX31_RS16280 0.22 -0.7
5,911 - EX31_RS16280 0.22 -0.4
5,914 + EX31_RS16280 0.23 +0.9
5,914 + EX31_RS16280 0.23 -0.3
5,979 + EX31_RS16280 0.35 +0.0
5,980 - EX31_RS16280 0.35 -0.2
5,980 - EX31_RS16280 0.35 +0.8
5,980 - EX31_RS16280 0.35 +0.1
6,048 + EX31_RS16280 0.47 +0.9
6,048 + EX31_RS16280 0.47 +0.1
6,052 + EX31_RS16280 0.48 +0.2
6,052 + EX31_RS16280 0.48 +0.4
6,053 - EX31_RS16280 0.48 +1.3
6,091 + EX31_RS16280 0.55 -0.3
6,127 + EX31_RS16280 0.62 +0.9
6,158 - EX31_RS16280 0.68 +0.0
6,158 - EX31_RS16280 0.68 +0.4
6,243 + EX31_RS16280 0.84 +0.3
6,263 - EX31_RS16280 0.87 -0.3
6,338 - +2.0
6,339 + -0.7
6,415 + +1.3
6,416 - +1.0
6,416 - -1.4
6,423 + +0.5
6,498 + -1.1
6,499 - -1.1
6,575 - +0.9
6,575 - +0.1
6,605 + -1.1
6,606 - +2.0
6,617 + -0.1
6,618 - -1.3
6,618 - +0.7
6,640 + -0.7

Or see this region's nucleotide sequence