Strain Fitness in Rahnella sp. WP5 around EX31_RS15930

Experiment: Ammonium chloride (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS15920 and EX31_RS15925 are separated by 153 nucleotidesEX31_RS15925 and EX31_RS15930 overlap by 4 nucleotidesEX31_RS15930 and EX31_RS15935 are separated by 80 nucleotidesEX31_RS15935 and EX31_RS15940 are separated by 96 nucleotides EX31_RS15920: EX31_RS15920 - YihD family protein, at 42,795 to 43,064 _RS15920 EX31_RS15925: EX31_RS15925 - molybdenum cofactor guanylyltransferase MobA, at 43,218 to 43,805 _RS15925 EX31_RS15930: EX31_RS15930 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 43,802 to 44,335 _RS15930 EX31_RS15935: EX31_RS15935 - 5S ribosomal RNA, at 44,416 to 44,531 _RS15935 EX31_RS15940: EX31_RS15940 - 23S ribosomal RNA, at 44,628 to 44,707 _RS15940 Position (kb) 43 44 45Strain fitness (log2 ratio) -2 -1 0 1 2 3at 42.822 kb on + strand, within EX31_RS15920at 42.823 kb on - strand, within EX31_RS15920at 42.823 kb on - strand, within EX31_RS15920at 42.823 kb on - strand, within EX31_RS15920at 42.837 kb on - strand, within EX31_RS15920at 42.995 kb on + strand, within EX31_RS15920at 42.996 kb on - strand, within EX31_RS15920at 43.048 kb on - strandat 43.067 kb on + strandat 43.067 kb on + strandat 43.082 kb on + strandat 43.082 kb on + strandat 43.082 kb on + strandat 43.082 kb on + strandat 43.082 kb on + strandat 43.082 kb on + strandat 43.083 kb on - strandat 43.083 kb on - strandat 43.083 kb on - strandat 43.083 kb on - strandat 43.083 kb on - strandat 43.083 kb on - strandat 43.083 kb on - strandat 43.101 kb on + strandat 43.110 kb on + strandat 43.110 kb on + strandat 43.150 kb on - strandat 43.170 kb on + strandat 43.171 kb on - strandat 43.171 kb on - strandat 43.171 kb on - strandat 43.194 kb on + strandat 43.211 kb on - strandat 43.214 kb on + strandat 43.214 kb on + strandat 43.214 kb on + strandat 43.214 kb on + strandat 43.214 kb on + strandat 43.214 kb on + strandat 43.214 kb on + strandat 43.214 kb on + strandat 43.214 kb on + strandat 43.214 kb on + strandat 43.215 kb on - strandat 43.215 kb on - strandat 43.215 kb on - strandat 43.215 kb on - strandat 43.215 kb on - strandat 43.215 kb on - strandat 43.215 kb on - strandat 43.215 kb on - strandat 43.229 kb on + strandat 43.301 kb on + strand, within EX31_RS15925at 43.301 kb on + strand, within EX31_RS15925at 43.301 kb on + strand, within EX31_RS15925at 43.302 kb on - strand, within EX31_RS15925at 43.325 kb on + strand, within EX31_RS15925at 43.325 kb on + strand, within EX31_RS15925at 43.325 kb on + strand, within EX31_RS15925at 43.325 kb on + strand, within EX31_RS15925at 43.326 kb on - strand, within EX31_RS15925at 43.326 kb on - strand, within EX31_RS15925at 43.358 kb on + strand, within EX31_RS15925at 43.358 kb on + strand, within EX31_RS15925at 43.358 kb on + strand, within EX31_RS15925at 43.359 kb on - strand, within EX31_RS15925at 43.424 kb on + strand, within EX31_RS15925at 43.424 kb on + strand, within EX31_RS15925at 43.424 kb on + strand, within EX31_RS15925at 43.425 kb on - strand, within EX31_RS15925at 43.425 kb on - strand, within EX31_RS15925at 43.468 kb on + strand, within EX31_RS15925at 43.468 kb on + strand, within EX31_RS15925at 43.468 kb on + strand, within EX31_RS15925at 43.469 kb on - strand, within EX31_RS15925at 43.469 kb on - strand, within EX31_RS15925at 43.469 kb on - strand, within EX31_RS15925at 43.469 kb on - strand, within EX31_RS15925at 43.478 kb on + strand, within EX31_RS15925at 43.513 kb on + strand, within EX31_RS15925at 43.514 kb on - strand, within EX31_RS15925at 43.514 kb on - strand, within EX31_RS15925at 43.514 kb on - strand, within EX31_RS15925at 43.514 kb on - strand, within EX31_RS15925at 43.514 kb on - strand, within EX31_RS15925at 43.653 kb on + strand, within EX31_RS15925at 43.653 kb on + strand, within EX31_RS15925at 43.653 kb on + strand, within EX31_RS15925at 43.654 kb on - strand, within EX31_RS15925at 43.654 kb on - strand, within EX31_RS15925at 43.714 kb on + strand, within EX31_RS15925at 43.715 kb on - strand, within EX31_RS15925at 43.715 kb on - strand, within EX31_RS15925at 43.781 kb on + strandat 43.782 kb on - strandat 43.799 kb on - strandat 43.806 kb on + strandat 43.806 kb on + strandat 43.806 kb on + strandat 43.806 kb on + strandat 43.806 kb on + strandat 43.807 kb on - strandat 43.886 kb on + strand, within EX31_RS15930at 43.905 kb on + strand, within EX31_RS15930at 43.905 kb on + strand, within EX31_RS15930at 43.905 kb on + strand, within EX31_RS15930at 43.906 kb on - strand, within EX31_RS15930at 43.906 kb on - strand, within EX31_RS15930at 43.906 kb on - strand, within EX31_RS15930at 43.927 kb on + strand, within EX31_RS15930at 43.927 kb on + strand, within EX31_RS15930at 43.927 kb on + strand, within EX31_RS15930at 43.927 kb on + strand, within EX31_RS15930at 43.927 kb on + strand, within EX31_RS15930at 43.927 kb on + strand, within EX31_RS15930at 43.927 kb on + strand, within EX31_RS15930at 43.927 kb on + strand, within EX31_RS15930at 43.927 kb on + strand, within EX31_RS15930at 43.928 kb on - strand, within EX31_RS15930at 43.928 kb on - strand, within EX31_RS15930at 43.928 kb on - strand, within EX31_RS15930at 43.928 kb on - strand, within EX31_RS15930at 43.928 kb on - strand, within EX31_RS15930at 43.951 kb on + strand, within EX31_RS15930at 43.952 kb on - strand, within EX31_RS15930at 43.952 kb on - strand, within EX31_RS15930at 43.966 kb on + strand, within EX31_RS15930at 43.967 kb on - strand, within EX31_RS15930at 43.967 kb on - strand, within EX31_RS15930at 43.978 kb on - strand, within EX31_RS15930at 43.978 kb on - strand, within EX31_RS15930at 43.981 kb on + strand, within EX31_RS15930at 43.981 kb on + strand, within EX31_RS15930at 43.981 kb on + strand, within EX31_RS15930at 43.982 kb on - strand, within EX31_RS15930at 43.982 kb on - strand, within EX31_RS15930at 44.002 kb on + strand, within EX31_RS15930at 44.002 kb on + strand, within EX31_RS15930at 44.002 kb on + strand, within EX31_RS15930at 44.002 kb on + strand, within EX31_RS15930at 44.003 kb on - strand, within EX31_RS15930at 44.003 kb on - strand, within EX31_RS15930at 44.031 kb on + strand, within EX31_RS15930at 44.061 kb on + strand, within EX31_RS15930at 44.061 kb on + strand, within EX31_RS15930at 44.061 kb on + strand, within EX31_RS15930at 44.067 kb on + strand, within EX31_RS15930at 44.067 kb on + strand, within EX31_RS15930at 44.067 kb on + strand, within EX31_RS15930at 44.067 kb on + strand, within EX31_RS15930at 44.068 kb on - strand, within EX31_RS15930at 44.072 kb on + strand, within EX31_RS15930at 44.072 kb on + strand, within EX31_RS15930at 44.072 kb on + strand, within EX31_RS15930at 44.073 kb on - strand, within EX31_RS15930at 44.098 kb on + strand, within EX31_RS15930at 44.098 kb on + strand, within EX31_RS15930at 44.107 kb on + strand, within EX31_RS15930at 44.182 kb on - strand, within EX31_RS15930at 44.193 kb on + strand, within EX31_RS15930at 44.194 kb on - strand, within EX31_RS15930at 44.200 kb on + strand, within EX31_RS15930at 44.201 kb on - strand, within EX31_RS15930at 44.242 kb on + strand, within EX31_RS15930at 44.242 kb on + strand, within EX31_RS15930at 44.257 kb on + strand, within EX31_RS15930at 44.271 kb on + strand, within EX31_RS15930at 44.271 kb on + strand, within EX31_RS15930at 44.271 kb on + strand, within EX31_RS15930at 44.271 kb on + strand, within EX31_RS15930at 44.271 kb on + strand, within EX31_RS15930at 44.272 kb on - strand, within EX31_RS15930at 44.272 kb on - strand, within EX31_RS15930at 44.275 kb on + strand, within EX31_RS15930at 44.275 kb on + strand, within EX31_RS15930at 44.275 kb on + strand, within EX31_RS15930at 44.275 kb on + strand, within EX31_RS15930at 44.275 kb on + strand, within EX31_RS15930at 44.275 kb on + strand, within EX31_RS15930at 44.276 kb on - strand, within EX31_RS15930at 44.281 kb on - strand, within EX31_RS15930

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; no shaking
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42,822 + EX31_RS15920 0.10 +0.5
42,823 - EX31_RS15920 0.10 -0.3
42,823 - EX31_RS15920 0.10 +0.7
42,823 - EX31_RS15920 0.10 -0.4
42,837 - EX31_RS15920 0.16 -0.9
42,995 + EX31_RS15920 0.74 +0.4
42,996 - EX31_RS15920 0.74 -1.0
43,048 - +0.6
43,067 + +1.6
43,067 + -0.2
43,082 + +0.7
43,082 + -0.5
43,082 + +1.5
43,082 + -0.4
43,082 + +0.6
43,082 + +0.3
43,083 - -0.0
43,083 - -0.6
43,083 - -0.4
43,083 - +1.1
43,083 - +1.1
43,083 - -1.2
43,083 - -0.3
43,101 + -0.2
43,110 + +0.1
43,110 + -0.4
43,150 - -1.2
43,170 + -0.9
43,171 - -0.2
43,171 - +0.0
43,171 - -0.9
43,194 + +1.3
43,211 - +0.5
43,214 + -1.1
43,214 + +0.6
43,214 + +0.0
43,214 + +0.0
43,214 + -0.2
43,214 + -0.3
43,214 + +0.6
43,214 + -0.1
43,214 + -0.2
43,214 + -2.4
43,215 - +0.2
43,215 - -1.0
43,215 - +1.0
43,215 - -1.5
43,215 - -0.6
43,215 - +1.3
43,215 - -1.0
43,215 - +0.2
43,229 + -0.7
43,301 + EX31_RS15925 0.14 -1.3
43,301 + EX31_RS15925 0.14 -0.5
43,301 + EX31_RS15925 0.14 +0.1
43,302 - EX31_RS15925 0.14 +0.0
43,325 + EX31_RS15925 0.18 +0.2
43,325 + EX31_RS15925 0.18 -0.1
43,325 + EX31_RS15925 0.18 -1.1
43,325 + EX31_RS15925 0.18 +0.4
43,326 - EX31_RS15925 0.18 -1.7
43,326 - EX31_RS15925 0.18 +0.0
43,358 + EX31_RS15925 0.24 -0.3
43,358 + EX31_RS15925 0.24 -0.2
43,358 + EX31_RS15925 0.24 +0.6
43,359 - EX31_RS15925 0.24 +0.5
43,424 + EX31_RS15925 0.35 +2.3
43,424 + EX31_RS15925 0.35 -1.2
43,424 + EX31_RS15925 0.35 +1.7
43,425 - EX31_RS15925 0.35 -0.1
43,425 - EX31_RS15925 0.35 +0.4
43,468 + EX31_RS15925 0.43 -0.4
43,468 + EX31_RS15925 0.43 +0.3
43,468 + EX31_RS15925 0.43 -0.1
43,469 - EX31_RS15925 0.43 -0.8
43,469 - EX31_RS15925 0.43 +0.1
43,469 - EX31_RS15925 0.43 +0.7
43,469 - EX31_RS15925 0.43 -0.6
43,478 + EX31_RS15925 0.44 -0.5
43,513 + EX31_RS15925 0.50 +0.1
43,514 - EX31_RS15925 0.50 -0.5
43,514 - EX31_RS15925 0.50 -1.2
43,514 - EX31_RS15925 0.50 -0.6
43,514 - EX31_RS15925 0.50 +0.1
43,514 - EX31_RS15925 0.50 +1.2
43,653 + EX31_RS15925 0.74 -0.6
43,653 + EX31_RS15925 0.74 +0.3
43,653 + EX31_RS15925 0.74 +0.4
43,654 - EX31_RS15925 0.74 +1.3
43,654 - EX31_RS15925 0.74 +0.4
43,714 + EX31_RS15925 0.84 -0.4
43,715 - EX31_RS15925 0.85 +1.8
43,715 - EX31_RS15925 0.85 -2.3
43,781 + +0.1
43,782 - -0.5
43,799 - +3.5
43,806 + -0.0
43,806 + +0.4
43,806 + +1.9
43,806 + -0.2
43,806 + -0.2
43,807 - +0.5
43,886 + EX31_RS15930 0.16 -0.3
43,905 + EX31_RS15930 0.19 -0.9
43,905 + EX31_RS15930 0.19 -1.1
43,905 + EX31_RS15930 0.19 -1.0
43,906 - EX31_RS15930 0.19 -0.4
43,906 - EX31_RS15930 0.19 +0.2
43,906 - EX31_RS15930 0.19 +0.9
43,927 + EX31_RS15930 0.23 -0.2
43,927 + EX31_RS15930 0.23 +0.6
43,927 + EX31_RS15930 0.23 -1.0
43,927 + EX31_RS15930 0.23 -0.1
43,927 + EX31_RS15930 0.23 +2.7
43,927 + EX31_RS15930 0.23 +1.0
43,927 + EX31_RS15930 0.23 +0.2
43,927 + EX31_RS15930 0.23 +0.2
43,927 + EX31_RS15930 0.23 -0.6
43,928 - EX31_RS15930 0.24 -1.1
43,928 - EX31_RS15930 0.24 +0.3
43,928 - EX31_RS15930 0.24 -0.3
43,928 - EX31_RS15930 0.24 +1.3
43,928 - EX31_RS15930 0.24 -0.4
43,951 + EX31_RS15930 0.28 +0.6
43,952 - EX31_RS15930 0.28 -0.2
43,952 - EX31_RS15930 0.28 +0.1
43,966 + EX31_RS15930 0.31 +0.3
43,967 - EX31_RS15930 0.31 +1.0
43,967 - EX31_RS15930 0.31 +1.6
43,978 - EX31_RS15930 0.33 +0.1
43,978 - EX31_RS15930 0.33 +0.3
43,981 + EX31_RS15930 0.34 -0.5
43,981 + EX31_RS15930 0.34 -0.2
43,981 + EX31_RS15930 0.34 +0.3
43,982 - EX31_RS15930 0.34 +1.0
43,982 - EX31_RS15930 0.34 -1.2
44,002 + EX31_RS15930 0.37 -0.3
44,002 + EX31_RS15930 0.37 +0.1
44,002 + EX31_RS15930 0.37 +0.7
44,002 + EX31_RS15930 0.37 +0.5
44,003 - EX31_RS15930 0.38 -0.9
44,003 - EX31_RS15930 0.38 -2.4
44,031 + EX31_RS15930 0.43 +0.9
44,061 + EX31_RS15930 0.49 -0.7
44,061 + EX31_RS15930 0.49 +0.5
44,061 + EX31_RS15930 0.49 +0.3
44,067 + EX31_RS15930 0.50 -0.2
44,067 + EX31_RS15930 0.50 +0.4
44,067 + EX31_RS15930 0.50 +3.5
44,067 + EX31_RS15930 0.50 -0.3
44,068 - EX31_RS15930 0.50 +0.1
44,072 + EX31_RS15930 0.51 +0.6
44,072 + EX31_RS15930 0.51 +0.3
44,072 + EX31_RS15930 0.51 -0.3
44,073 - EX31_RS15930 0.51 +1.0
44,098 + EX31_RS15930 0.55 +0.2
44,098 + EX31_RS15930 0.55 +2.1
44,107 + EX31_RS15930 0.57 -0.2
44,182 - EX31_RS15930 0.71 +0.1
44,193 + EX31_RS15930 0.73 -0.2
44,194 - EX31_RS15930 0.73 +1.5
44,200 + EX31_RS15930 0.75 +0.1
44,201 - EX31_RS15930 0.75 +0.7
44,242 + EX31_RS15930 0.82 -0.8
44,242 + EX31_RS15930 0.82 -0.3
44,257 + EX31_RS15930 0.85 -0.2
44,271 + EX31_RS15930 0.88 +0.8
44,271 + EX31_RS15930 0.88 +0.1
44,271 + EX31_RS15930 0.88 +1.0
44,271 + EX31_RS15930 0.88 -0.2
44,271 + EX31_RS15930 0.88 +0.7
44,272 - EX31_RS15930 0.88 +0.7
44,272 - EX31_RS15930 0.88 +1.0
44,275 + EX31_RS15930 0.89 -0.3
44,275 + EX31_RS15930 0.89 -0.6
44,275 + EX31_RS15930 0.89 +0.8
44,275 + EX31_RS15930 0.89 +1.1
44,275 + EX31_RS15930 0.89 +2.2
44,275 + EX31_RS15930 0.89 +0.1
44,276 - EX31_RS15930 0.89 +0.8
44,281 - EX31_RS15930 0.90 +1.6

Or see this region's nucleotide sequence