Strain Fitness in Rahnella sp. WP5 around EX31_RS11330

Experiment: Ammonium chloride (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11320 and EX31_RS11325 are separated by 159 nucleotidesEX31_RS11325 and EX31_RS11330 are separated by 49 nucleotidesEX31_RS11330 and EX31_RS11335 are separated by 431 nucleotidesEX31_RS11335 and EX31_RS11340 are separated by 1 nucleotides EX31_RS11320: EX31_RS11320 - flagellar basal body P-ring formation protein FlgA, at 195,658 to 196,440 _RS11320 EX31_RS11325: EX31_RS11325 - anti-sigma-28 factor FlgM, at 196,600 to 196,902 _RS11325 EX31_RS11330: EX31_RS11330 - flagellar synthesis chaperone protein FlgN, at 196,952 to 197,404 _RS11330 EX31_RS11335: EX31_RS11335 - flagellar protein FlhE, at 197,836 to 198,252 _RS11335 EX31_RS11340: EX31_RS11340 - flagellar biosynthesis protein FlhA, at 198,254 to 200,338 _RS11340 Position (kb) 196 197 198Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 195.953 kb on + strand, within EX31_RS11320at 195.954 kb on - strand, within EX31_RS11320at 195.954 kb on - strand, within EX31_RS11320at 195.967 kb on - strand, within EX31_RS11320at 196.020 kb on + strand, within EX31_RS11320at 196.040 kb on + strand, within EX31_RS11320at 196.040 kb on + strand, within EX31_RS11320at 196.040 kb on + strand, within EX31_RS11320at 196.041 kb on - strand, within EX31_RS11320at 196.069 kb on + strand, within EX31_RS11320at 196.311 kb on + strand, within EX31_RS11320at 196.311 kb on + strand, within EX31_RS11320at 196.311 kb on + strand, within EX31_RS11320at 196.312 kb on - strand, within EX31_RS11320at 196.317 kb on - strand, within EX31_RS11320at 196.436 kb on + strandat 196.436 kb on + strandat 196.438 kb on + strandat 196.438 kb on + strandat 196.438 kb on + strandat 196.438 kb on + strandat 196.438 kb on + strandat 196.444 kb on + strandat 196.478 kb on + strandat 196.478 kb on + strandat 196.518 kb on + strandat 196.518 kb on + strandat 196.518 kb on + strandat 196.599 kb on + strandat 196.599 kb on + strandat 196.614 kb on + strandat 196.614 kb on + strandat 196.614 kb on + strandat 196.614 kb on + strandat 196.614 kb on + strandat 196.885 kb on + strandat 196.885 kb on + strandat 196.940 kb on + strandat 196.940 kb on + strandat 196.943 kb on + strandat 196.944 kb on - strandat 196.978 kb on + strandat 196.978 kb on + strandat 197.018 kb on - strand, within EX31_RS11330at 197.052 kb on + strand, within EX31_RS11330at 197.074 kb on + strand, within EX31_RS11330at 197.074 kb on + strand, within EX31_RS11330at 197.074 kb on + strand, within EX31_RS11330at 197.074 kb on + strand, within EX31_RS11330at 197.074 kb on + strand, within EX31_RS11330at 197.074 kb on + strand, within EX31_RS11330at 197.074 kb on + strand, within EX31_RS11330at 197.074 kb on + strand, within EX31_RS11330at 197.074 kb on + strand, within EX31_RS11330at 197.074 kb on + strand, within EX31_RS11330at 197.074 kb on + strand, within EX31_RS11330at 197.074 kb on + strand, within EX31_RS11330at 197.075 kb on - strand, within EX31_RS11330at 197.075 kb on - strand, within EX31_RS11330at 197.076 kb on + strand, within EX31_RS11330at 197.076 kb on + strand, within EX31_RS11330at 197.076 kb on + strand, within EX31_RS11330at 197.114 kb on + strand, within EX31_RS11330at 197.115 kb on - strand, within EX31_RS11330at 197.221 kb on + strand, within EX31_RS11330at 197.221 kb on + strand, within EX31_RS11330at 197.221 kb on + strand, within EX31_RS11330at 197.221 kb on + strand, within EX31_RS11330at 197.221 kb on + strand, within EX31_RS11330at 197.222 kb on - strand, within EX31_RS11330at 197.222 kb on - strand, within EX31_RS11330at 197.253 kb on + strand, within EX31_RS11330at 197.274 kb on + strand, within EX31_RS11330at 197.274 kb on + strand, within EX31_RS11330at 197.294 kb on + strand, within EX31_RS11330at 197.295 kb on - strand, within EX31_RS11330at 197.296 kb on + strand, within EX31_RS11330at 197.297 kb on - strand, within EX31_RS11330at 197.297 kb on - strand, within EX31_RS11330at 197.441 kb on + strandat 197.441 kb on + strandat 197.442 kb on - strandat 197.477 kb on + strandat 197.483 kb on + strandat 197.483 kb on + strandat 197.491 kb on + strandat 197.583 kb on + strandat 197.583 kb on + strandat 197.584 kb on - strandat 197.584 kb on - strandat 197.584 kb on - strandat 197.584 kb on - strandat 197.597 kb on - strandat 197.631 kb on + strandat 197.631 kb on + strandat 197.632 kb on - strandat 197.649 kb on - strandat 197.649 kb on - strandat 197.697 kb on - strandat 197.697 kb on - strandat 197.697 kb on - strandat 197.713 kb on + strandat 197.714 kb on - strandat 197.742 kb on + strandat 197.743 kb on - strandat 197.816 kb on + strandat 197.816 kb on + strandat 197.819 kb on + strandat 197.819 kb on + strandat 197.820 kb on - strandat 197.820 kb on - strandat 197.820 kb on - strandat 197.837 kb on + strandat 197.843 kb on + strandat 197.843 kb on + strandat 197.844 kb on - strandat 197.923 kb on + strand, within EX31_RS11335at 197.949 kb on - strand, within EX31_RS11335at 198.064 kb on + strand, within EX31_RS11335at 198.065 kb on - strand, within EX31_RS11335at 198.065 kb on - strand, within EX31_RS11335at 198.256 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; no shaking
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195,953 + EX31_RS11320 0.38 +1.0
195,954 - EX31_RS11320 0.38 +2.0
195,954 - EX31_RS11320 0.38 +1.9
195,967 - EX31_RS11320 0.39 +0.4
196,020 + EX31_RS11320 0.46 -0.8
196,040 + EX31_RS11320 0.49 +0.7
196,040 + EX31_RS11320 0.49 -1.1
196,040 + EX31_RS11320 0.49 -0.9
196,041 - EX31_RS11320 0.49 +0.0
196,069 + EX31_RS11320 0.52 -1.1
196,311 + EX31_RS11320 0.83 -0.3
196,311 + EX31_RS11320 0.83 +0.3
196,311 + EX31_RS11320 0.83 -0.8
196,312 - EX31_RS11320 0.84 +0.4
196,317 - EX31_RS11320 0.84 +1.7
196,436 + -1.0
196,436 + +0.4
196,438 + +0.7
196,438 + +0.0
196,438 + -0.4
196,438 + -1.0
196,438 + +0.1
196,444 + +0.2
196,478 + +1.4
196,478 + -0.1
196,518 + -1.0
196,518 + +0.7
196,518 + -1.7
196,599 + -2.1
196,599 + -1.7
196,614 + -2.5
196,614 + +1.0
196,614 + -2.6
196,614 + -1.7
196,614 + -2.4
196,885 + +0.1
196,885 + +0.2
196,940 + +0.9
196,940 + +2.4
196,943 + +2.0
196,944 - -0.3
196,978 + -0.6
196,978 + +1.0
197,018 - EX31_RS11330 0.15 -1.3
197,052 + EX31_RS11330 0.22 +0.2
197,074 + EX31_RS11330 0.27 +0.4
197,074 + EX31_RS11330 0.27 -0.5
197,074 + EX31_RS11330 0.27 +0.5
197,074 + EX31_RS11330 0.27 +0.1
197,074 + EX31_RS11330 0.27 -0.9
197,074 + EX31_RS11330 0.27 -0.4
197,074 + EX31_RS11330 0.27 +0.9
197,074 + EX31_RS11330 0.27 +0.5
197,074 + EX31_RS11330 0.27 -0.7
197,074 + EX31_RS11330 0.27 -2.5
197,074 + EX31_RS11330 0.27 -2.6
197,074 + EX31_RS11330 0.27 -0.9
197,075 - EX31_RS11330 0.27 -0.8
197,075 - EX31_RS11330 0.27 +1.0
197,076 + EX31_RS11330 0.27 +0.8
197,076 + EX31_RS11330 0.27 -0.1
197,076 + EX31_RS11330 0.27 -1.7
197,114 + EX31_RS11330 0.36 +0.0
197,115 - EX31_RS11330 0.36 +0.4
197,221 + EX31_RS11330 0.59 +2.0
197,221 + EX31_RS11330 0.59 +0.1
197,221 + EX31_RS11330 0.59 +0.9
197,221 + EX31_RS11330 0.59 +0.7
197,221 + EX31_RS11330 0.59 -2.5
197,222 - EX31_RS11330 0.60 -0.3
197,222 - EX31_RS11330 0.60 +2.6
197,253 + EX31_RS11330 0.66 +0.4
197,274 + EX31_RS11330 0.71 -0.6
197,274 + EX31_RS11330 0.71 -0.9
197,294 + EX31_RS11330 0.75 -0.7
197,295 - EX31_RS11330 0.76 +1.0
197,296 + EX31_RS11330 0.76 -1.7
197,297 - EX31_RS11330 0.76 +0.4
197,297 - EX31_RS11330 0.76 -1.3
197,441 + +0.1
197,441 + -2.1
197,442 - +2.0
197,477 + +4.0
197,483 + -0.3
197,483 + -0.8
197,491 + +3.6
197,583 + +0.4
197,583 + +2.0
197,584 - -0.1
197,584 - -0.6
197,584 - -0.3
197,584 - +1.4
197,597 - -2.1
197,631 + +0.4
197,631 + +1.8
197,632 - +0.0
197,649 - -1.0
197,649 - -0.4
197,697 - -0.9
197,697 - -0.1
197,697 - +1.4
197,713 + +0.3
197,714 - -0.7
197,742 + -0.7
197,743 - -0.5
197,816 + +0.2
197,816 + +0.4
197,819 + -0.8
197,819 + +0.0
197,820 - +0.5
197,820 - +0.0
197,820 - +1.1
197,837 + -0.3
197,843 + +0.1
197,843 + -0.4
197,844 - +0.3
197,923 + EX31_RS11335 0.21 +1.8
197,949 - EX31_RS11335 0.27 +2.0
198,064 + EX31_RS11335 0.55 +0.7
198,065 - EX31_RS11335 0.55 -0.9
198,065 - EX31_RS11335 0.55 +0.1
198,256 - -1.4

Or see this region's nucleotide sequence