Strain Fitness in Rahnella sp. WP5 around EX31_RS09675

Experiment: Ammonium chloride (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09665 and EX31_RS09670 are separated by 85 nucleotidesEX31_RS09670 and EX31_RS09675 are separated by 161 nucleotidesEX31_RS09675 and EX31_RS09680 are separated by 445 nucleotidesEX31_RS09680 and EX31_RS09685 overlap by 8 nucleotides EX31_RS09665: EX31_RS09665 - hypothetical protein, at 135,338 to 135,649 _RS09665 EX31_RS09670: EX31_RS09670 - bleomycin resistance protein, at 135,735 to 136,100 _RS09670 EX31_RS09675: EX31_RS09675 - porin OmpC, at 136,262 to 137,371 _RS09675 EX31_RS09680: EX31_RS09680 - hypothetical protein, at 137,817 to 138,104 _RS09680 EX31_RS09685: EX31_RS09685 - GNAT family N-acetyltransferase, at 138,097 to 138,612 _RS09685 Position (kb) 136 137 138Strain fitness (log2 ratio) -2 -1 0 1 2 3at 135.327 kb on + strandat 135.328 kb on - strandat 135.392 kb on + strand, within EX31_RS09665at 135.393 kb on - strand, within EX31_RS09665at 135.393 kb on - strand, within EX31_RS09665at 135.418 kb on - strand, within EX31_RS09665at 135.481 kb on - strand, within EX31_RS09665at 135.481 kb on - strand, within EX31_RS09665at 135.873 kb on - strand, within EX31_RS09670at 136.012 kb on + strand, within EX31_RS09670at 136.012 kb on + strand, within EX31_RS09670at 136.013 kb on - strand, within EX31_RS09670at 136.013 kb on - strand, within EX31_RS09670at 136.080 kb on - strandat 136.119 kb on - strandat 136.119 kb on - strandat 136.119 kb on - strandat 136.242 kb on - strandat 136.242 kb on - strandat 136.261 kb on - strandat 136.355 kb on - strandat 136.355 kb on - strandat 136.355 kb on - strandat 136.366 kb on - strandat 136.366 kb on - strandat 136.366 kb on - strandat 136.366 kb on - strandat 136.366 kb on - strandat 136.366 kb on - strandat 136.366 kb on - strandat 136.366 kb on - strandat 136.366 kb on - strandat 136.393 kb on - strand, within EX31_RS09675at 136.393 kb on - strand, within EX31_RS09675at 136.393 kb on - strand, within EX31_RS09675at 136.393 kb on - strand, within EX31_RS09675at 136.404 kb on - strand, within EX31_RS09675at 136.404 kb on - strand, within EX31_RS09675at 136.404 kb on - strand, within EX31_RS09675at 136.404 kb on - strand, within EX31_RS09675at 136.404 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.418 kb on - strand, within EX31_RS09675at 136.418 kb on - strand, within EX31_RS09675at 136.438 kb on - strand, within EX31_RS09675at 136.471 kb on - strand, within EX31_RS09675at 136.471 kb on - strand, within EX31_RS09675at 136.471 kb on - strand, within EX31_RS09675at 136.471 kb on - strand, within EX31_RS09675at 136.471 kb on - strand, within EX31_RS09675at 136.471 kb on - strand, within EX31_RS09675at 136.471 kb on - strand, within EX31_RS09675at 136.471 kb on - strand, within EX31_RS09675at 136.471 kb on - strand, within EX31_RS09675at 136.507 kb on - strand, within EX31_RS09675at 136.507 kb on - strand, within EX31_RS09675at 136.507 kb on - strand, within EX31_RS09675at 136.552 kb on - strand, within EX31_RS09675at 136.591 kb on - strand, within EX31_RS09675at 136.603 kb on - strand, within EX31_RS09675at 136.603 kb on - strand, within EX31_RS09675at 136.618 kb on - strand, within EX31_RS09675at 136.618 kb on - strand, within EX31_RS09675at 136.618 kb on - strand, within EX31_RS09675at 136.618 kb on - strand, within EX31_RS09675at 136.618 kb on - strand, within EX31_RS09675at 136.622 kb on - strand, within EX31_RS09675at 136.636 kb on - strand, within EX31_RS09675at 136.636 kb on - strand, within EX31_RS09675at 136.636 kb on - strand, within EX31_RS09675at 136.636 kb on - strand, within EX31_RS09675at 136.636 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.829 kb on - strand, within EX31_RS09675at 136.829 kb on - strand, within EX31_RS09675at 136.829 kb on - strand, within EX31_RS09675at 136.829 kb on - strand, within EX31_RS09675at 136.829 kb on - strand, within EX31_RS09675at 136.829 kb on - strand, within EX31_RS09675at 136.861 kb on - strand, within EX31_RS09675at 136.915 kb on - strand, within EX31_RS09675at 136.923 kb on - strand, within EX31_RS09675at 136.923 kb on - strand, within EX31_RS09675at 136.923 kb on - strand, within EX31_RS09675at 136.923 kb on - strand, within EX31_RS09675at 136.963 kb on - strand, within EX31_RS09675at 136.967 kb on - strand, within EX31_RS09675at 137.014 kb on - strand, within EX31_RS09675at 137.014 kb on - strand, within EX31_RS09675at 137.014 kb on - strand, within EX31_RS09675at 137.014 kb on - strand, within EX31_RS09675at 137.014 kb on - strand, within EX31_RS09675at 137.014 kb on - strand, within EX31_RS09675at 137.014 kb on - strand, within EX31_RS09675at 137.030 kb on - strand, within EX31_RS09675at 137.030 kb on - strand, within EX31_RS09675at 137.030 kb on - strand, within EX31_RS09675at 137.030 kb on - strand, within EX31_RS09675at 137.120 kb on - strand, within EX31_RS09675at 137.204 kb on - strand, within EX31_RS09675at 137.204 kb on - strand, within EX31_RS09675at 137.204 kb on - strand, within EX31_RS09675at 137.204 kb on - strand, within EX31_RS09675at 137.204 kb on - strand, within EX31_RS09675at 137.204 kb on - strand, within EX31_RS09675at 137.204 kb on - strand, within EX31_RS09675at 137.204 kb on - strand, within EX31_RS09675at 137.204 kb on - strand, within EX31_RS09675at 137.206 kb on - strand, within EX31_RS09675at 137.206 kb on - strand, within EX31_RS09675at 137.206 kb on - strand, within EX31_RS09675at 137.206 kb on - strand, within EX31_RS09675at 137.206 kb on - strand, within EX31_RS09675at 137.206 kb on - strand, within EX31_RS09675at 137.206 kb on - strand, within EX31_RS09675at 137.206 kb on - strand, within EX31_RS09675at 137.206 kb on - strand, within EX31_RS09675at 137.206 kb on - strand, within EX31_RS09675at 137.206 kb on - strand, within EX31_RS09675at 137.206 kb on - strand, within EX31_RS09675at 137.206 kb on - strand, within EX31_RS09675at 137.206 kb on - strand, within EX31_RS09675at 137.206 kb on - strand, within EX31_RS09675at 137.206 kb on - strand, within EX31_RS09675at 137.206 kb on - strand, within EX31_RS09675at 137.206 kb on - strand, within EX31_RS09675at 137.206 kb on - strand, within EX31_RS09675at 137.282 kb on - strandat 137.364 kb on - strandat 137.393 kb on - strandat 137.395 kb on - strandat 137.446 kb on - strandat 137.574 kb on - strandat 137.629 kb on + strandat 137.676 kb on + strandat 137.816 kb on - strandat 137.904 kb on + strand, within EX31_RS09680at 137.905 kb on - strand, within EX31_RS09680at 137.905 kb on - strand, within EX31_RS09680at 137.962 kb on + strand, within EX31_RS09680at 137.963 kb on - strand, within EX31_RS09680at 138.013 kb on + strand, within EX31_RS09680at 138.014 kb on - strand, within EX31_RS09680at 138.017 kb on + strand, within EX31_RS09680at 138.017 kb on + strand, within EX31_RS09680at 138.017 kb on + strand, within EX31_RS09680at 138.018 kb on - strand, within EX31_RS09680at 138.018 kb on - strand, within EX31_RS09680at 138.018 kb on - strand, within EX31_RS09680at 138.019 kb on + strand, within EX31_RS09680at 138.019 kb on + strand, within EX31_RS09680at 138.020 kb on - strand, within EX31_RS09680at 138.020 kb on - strand, within EX31_RS09680at 138.020 kb on - strand, within EX31_RS09680at 138.050 kb on + strand, within EX31_RS09680at 138.098 kb on + strandat 138.155 kb on + strand, within EX31_RS09685at 138.155 kb on + strand, within EX31_RS09685at 138.156 kb on - strand, within EX31_RS09685at 138.156 kb on - strand, within EX31_RS09685at 138.156 kb on - strand, within EX31_RS09685at 138.216 kb on + strand, within EX31_RS09685at 138.329 kb on + strand, within EX31_RS09685at 138.330 kb on - strand, within EX31_RS09685at 138.330 kb on - strand, within EX31_RS09685at 138.330 kb on - strand, within EX31_RS09685at 138.341 kb on - strand, within EX31_RS09685

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; no shaking
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135,327 + +1.3
135,328 - +1.0
135,392 + EX31_RS09665 0.17 -0.2
135,393 - EX31_RS09665 0.18 +1.0
135,393 - EX31_RS09665 0.18 -0.5
135,418 - EX31_RS09665 0.26 -0.5
135,481 - EX31_RS09665 0.46 +0.2
135,481 - EX31_RS09665 0.46 -0.5
135,873 - EX31_RS09670 0.38 -2.3
136,012 + EX31_RS09670 0.76 -2.0
136,012 + EX31_RS09670 0.76 +0.5
136,013 - EX31_RS09670 0.76 +0.6
136,013 - EX31_RS09670 0.76 +0.8
136,080 - -1.6
136,119 - +0.4
136,119 - +1.3
136,119 - +2.2
136,242 - +0.3
136,242 - -1.3
136,261 - -0.0
136,355 - +0.8
136,355 - -1.1
136,355 - -0.5
136,366 - +0.1
136,366 - +0.1
136,366 - -0.5
136,366 - -0.5
136,366 - +0.3
136,366 - -0.2
136,366 - +0.9
136,366 - +0.2
136,366 - -0.7
136,393 - EX31_RS09675 0.12 -0.3
136,393 - EX31_RS09675 0.12 +0.0
136,393 - EX31_RS09675 0.12 -1.2
136,393 - EX31_RS09675 0.12 -0.7
136,404 - EX31_RS09675 0.13 +0.0
136,404 - EX31_RS09675 0.13 -0.2
136,404 - EX31_RS09675 0.13 +0.5
136,404 - EX31_RS09675 0.13 +0.3
136,404 - EX31_RS09675 0.13 +0.1
136,414 - EX31_RS09675 0.14 -0.0
136,414 - EX31_RS09675 0.14 -0.0
136,414 - EX31_RS09675 0.14 +0.1
136,414 - EX31_RS09675 0.14 +0.1
136,414 - EX31_RS09675 0.14 +0.3
136,414 - EX31_RS09675 0.14 -1.5
136,414 - EX31_RS09675 0.14 +0.0
136,414 - EX31_RS09675 0.14 -0.4
136,414 - EX31_RS09675 0.14 -0.4
136,414 - EX31_RS09675 0.14 -0.6
136,414 - EX31_RS09675 0.14 -0.3
136,414 - EX31_RS09675 0.14 -0.3
136,414 - EX31_RS09675 0.14 -0.8
136,418 - EX31_RS09675 0.14 -0.0
136,418 - EX31_RS09675 0.14 +0.3
136,438 - EX31_RS09675 0.16 +0.7
136,471 - EX31_RS09675 0.19 -1.1
136,471 - EX31_RS09675 0.19 +0.3
136,471 - EX31_RS09675 0.19 +0.3
136,471 - EX31_RS09675 0.19 +0.4
136,471 - EX31_RS09675 0.19 -0.1
136,471 - EX31_RS09675 0.19 +0.8
136,471 - EX31_RS09675 0.19 -0.3
136,471 - EX31_RS09675 0.19 -1.2
136,471 - EX31_RS09675 0.19 +0.6
136,507 - EX31_RS09675 0.22 -0.4
136,507 - EX31_RS09675 0.22 -0.7
136,507 - EX31_RS09675 0.22 -0.2
136,552 - EX31_RS09675 0.26 -1.6
136,591 - EX31_RS09675 0.30 +1.1
136,603 - EX31_RS09675 0.31 +1.4
136,603 - EX31_RS09675 0.31 -0.9
136,618 - EX31_RS09675 0.32 +1.8
136,618 - EX31_RS09675 0.32 +0.2
136,618 - EX31_RS09675 0.32 -0.6
136,618 - EX31_RS09675 0.32 -0.9
136,618 - EX31_RS09675 0.32 +1.8
136,622 - EX31_RS09675 0.32 -0.5
136,636 - EX31_RS09675 0.34 +0.0
136,636 - EX31_RS09675 0.34 -0.2
136,636 - EX31_RS09675 0.34 -2.1
136,636 - EX31_RS09675 0.34 +0.1
136,636 - EX31_RS09675 0.34 +0.7
136,771 - EX31_RS09675 0.46 -0.6
136,771 - EX31_RS09675 0.46 -0.0
136,771 - EX31_RS09675 0.46 -1.5
136,771 - EX31_RS09675 0.46 +0.0
136,771 - EX31_RS09675 0.46 +0.0
136,771 - EX31_RS09675 0.46 -1.7
136,771 - EX31_RS09675 0.46 -2.6
136,771 - EX31_RS09675 0.46 -0.7
136,771 - EX31_RS09675 0.46 -0.2
136,771 - EX31_RS09675 0.46 +0.1
136,771 - EX31_RS09675 0.46 -1.2
136,771 - EX31_RS09675 0.46 -1.9
136,771 - EX31_RS09675 0.46 -1.0
136,829 - EX31_RS09675 0.51 +0.9
136,829 - EX31_RS09675 0.51 -0.2
136,829 - EX31_RS09675 0.51 +1.1
136,829 - EX31_RS09675 0.51 -0.8
136,829 - EX31_RS09675 0.51 -0.9
136,829 - EX31_RS09675 0.51 +0.4
136,861 - EX31_RS09675 0.54 +0.0
136,915 - EX31_RS09675 0.59 -1.5
136,923 - EX31_RS09675 0.60 +0.1
136,923 - EX31_RS09675 0.60 -0.2
136,923 - EX31_RS09675 0.60 +0.7
136,923 - EX31_RS09675 0.60 -0.1
136,963 - EX31_RS09675 0.63 +0.3
136,967 - EX31_RS09675 0.64 +0.0
137,014 - EX31_RS09675 0.68 +0.4
137,014 - EX31_RS09675 0.68 +0.6
137,014 - EX31_RS09675 0.68 -1.2
137,014 - EX31_RS09675 0.68 -0.1
137,014 - EX31_RS09675 0.68 -0.6
137,014 - EX31_RS09675 0.68 +0.2
137,014 - EX31_RS09675 0.68 -0.2
137,030 - EX31_RS09675 0.69 -0.2
137,030 - EX31_RS09675 0.69 +0.8
137,030 - EX31_RS09675 0.69 -0.5
137,030 - EX31_RS09675 0.69 +1.2
137,120 - EX31_RS09675 0.77 -0.5
137,204 - EX31_RS09675 0.85 -0.3
137,204 - EX31_RS09675 0.85 -0.7
137,204 - EX31_RS09675 0.85 +0.5
137,204 - EX31_RS09675 0.85 -0.1
137,204 - EX31_RS09675 0.85 -1.7
137,204 - EX31_RS09675 0.85 +0.4
137,204 - EX31_RS09675 0.85 -1.0
137,204 - EX31_RS09675 0.85 -0.4
137,204 - EX31_RS09675 0.85 -0.6
137,206 - EX31_RS09675 0.85 -0.4
137,206 - EX31_RS09675 0.85 -0.9
137,206 - EX31_RS09675 0.85 +0.3
137,206 - EX31_RS09675 0.85 -0.1
137,206 - EX31_RS09675 0.85 -0.5
137,206 - EX31_RS09675 0.85 -0.6
137,206 - EX31_RS09675 0.85 -0.4
137,206 - EX31_RS09675 0.85 +0.1
137,206 - EX31_RS09675 0.85 -0.4
137,206 - EX31_RS09675 0.85 -0.5
137,206 - EX31_RS09675 0.85 -0.1
137,206 - EX31_RS09675 0.85 +0.2
137,206 - EX31_RS09675 0.85 -0.5
137,206 - EX31_RS09675 0.85 +0.7
137,206 - EX31_RS09675 0.85 +0.5
137,206 - EX31_RS09675 0.85 -0.3
137,206 - EX31_RS09675 0.85 +0.1
137,206 - EX31_RS09675 0.85 -0.2
137,206 - EX31_RS09675 0.85 -0.6
137,282 - -0.0
137,364 - -0.2
137,393 - +1.1
137,395 - +0.3
137,446 - +0.5
137,574 - -0.3
137,629 + -0.4
137,676 + +0.8
137,816 - +0.6
137,904 + EX31_RS09680 0.30 -0.2
137,905 - EX31_RS09680 0.31 +0.8
137,905 - EX31_RS09680 0.31 +3.4
137,962 + EX31_RS09680 0.50 -0.4
137,963 - EX31_RS09680 0.51 -0.2
138,013 + EX31_RS09680 0.68 +1.4
138,014 - EX31_RS09680 0.68 +0.3
138,017 + EX31_RS09680 0.69 +0.0
138,017 + EX31_RS09680 0.69 +0.7
138,017 + EX31_RS09680 0.69 -1.3
138,018 - EX31_RS09680 0.70 +0.8
138,018 - EX31_RS09680 0.70 +0.1
138,018 - EX31_RS09680 0.70 -0.2
138,019 + EX31_RS09680 0.70 +0.3
138,019 + EX31_RS09680 0.70 +0.3
138,020 - EX31_RS09680 0.70 +1.2
138,020 - EX31_RS09680 0.70 +0.7
138,020 - EX31_RS09680 0.70 +1.4
138,050 + EX31_RS09680 0.81 +0.3
138,098 + -0.2
138,155 + EX31_RS09685 0.11 +0.8
138,155 + EX31_RS09685 0.11 +0.9
138,156 - EX31_RS09685 0.11 -0.8
138,156 - EX31_RS09685 0.11 +0.3
138,156 - EX31_RS09685 0.11 +0.4
138,216 + EX31_RS09685 0.23 +0.3
138,329 + EX31_RS09685 0.45 +0.3
138,330 - EX31_RS09685 0.45 +1.3
138,330 - EX31_RS09685 0.45 +0.6
138,330 - EX31_RS09685 0.45 +0.4
138,341 - EX31_RS09685 0.47 -0.9

Or see this region's nucleotide sequence