Strain Fitness in Rahnella sp. WP5 around EX31_RS03680

Experiment: Ammonium chloride (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS03675 and EX31_RS25915 are separated by 563 nucleotidesEX31_RS25915 and EX31_RS03680 are separated by 93 nucleotidesEX31_RS03680 and EX31_RS03685 are separated by 2 nucleotides EX31_RS03675: EX31_RS03675 - transcriptional regulator LeuO, at 233,702 to 234,649 _RS03675 EX31_RS25915: EX31_RS25915 - leu operon leader peptide, at 235,213 to 235,296 _RS25915 EX31_RS03680: EX31_RS03680 - 2-isopropylmalate synthase, at 235,390 to 236,979 _RS03680 EX31_RS03685: EX31_RS03685 - 3-isopropylmalate dehydrogenase, at 236,982 to 238,073 _RS03685 Position (kb) 235 236 237Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 234.518 kb on - strand, within EX31_RS03675at 234.518 kb on - strand, within EX31_RS03675at 234.518 kb on - strand, within EX31_RS03675at 234.532 kb on + strand, within EX31_RS03675at 234.626 kb on + strandat 234.626 kb on + strandat 234.626 kb on + strandat 234.627 kb on - strandat 234.665 kb on - strandat 234.665 kb on - strandat 234.701 kb on - strandat 234.746 kb on - strandat 234.902 kb on + strandat 234.930 kb on + strandat 234.931 kb on - strandat 234.931 kb on - strandat 234.931 kb on - strandat 234.952 kb on - strandat 234.954 kb on + strandat 234.959 kb on - strandat 235.006 kb on + strandat 235.131 kb on + strandat 235.131 kb on + strandat 235.131 kb on + strandat 235.131 kb on + strandat 235.131 kb on + strandat 235.131 kb on + strandat 235.131 kb on + strandat 235.132 kb on - strandat 235.156 kb on + strandat 235.156 kb on + strandat 235.156 kb on + strandat 235.235 kb on + strand, within EX31_RS25915at 235.235 kb on + strand, within EX31_RS25915at 235.241 kb on + strand, within EX31_RS25915at 235.241 kb on + strand, within EX31_RS25915at 235.241 kb on + strand, within EX31_RS25915at 235.241 kb on + strand, within EX31_RS25915at 235.241 kb on + strand, within EX31_RS25915at 235.241 kb on + strand, within EX31_RS25915at 235.242 kb on - strand, within EX31_RS25915at 235.244 kb on + strand, within EX31_RS25915at 235.245 kb on - strand, within EX31_RS25915at 235.245 kb on - strand, within EX31_RS25915at 235.258 kb on + strand, within EX31_RS25915at 235.258 kb on + strand, within EX31_RS25915at 235.259 kb on - strand, within EX31_RS25915at 235.315 kb on + strandat 235.315 kb on + strandat 235.315 kb on + strandat 235.346 kb on - strandat 235.367 kb on + strandat 235.384 kb on + strandat 235.385 kb on - strandat 235.446 kb on - strandat 235.446 kb on - strandat 235.446 kb on - strandat 235.464 kb on + strandat 235.629 kb on + strand, within EX31_RS03680at 235.652 kb on + strand, within EX31_RS03680at 235.653 kb on - strand, within EX31_RS03680at 235.653 kb on - strand, within EX31_RS03680at 235.653 kb on - strand, within EX31_RS03680at 235.653 kb on - strand, within EX31_RS03680at 235.698 kb on + strand, within EX31_RS03680at 235.698 kb on + strand, within EX31_RS03680at 235.742 kb on + strand, within EX31_RS03680at 235.742 kb on + strand, within EX31_RS03680at 235.742 kb on + strand, within EX31_RS03680at 235.779 kb on + strand, within EX31_RS03680at 235.783 kb on + strand, within EX31_RS03680at 235.783 kb on + strand, within EX31_RS03680at 235.783 kb on + strand, within EX31_RS03680at 235.783 kb on + strand, within EX31_RS03680at 235.784 kb on - strand, within EX31_RS03680at 235.784 kb on - strand, within EX31_RS03680at 235.784 kb on - strand, within EX31_RS03680at 235.784 kb on - strand, within EX31_RS03680at 235.784 kb on - strand, within EX31_RS03680at 235.784 kb on - strand, within EX31_RS03680at 235.909 kb on + strand, within EX31_RS03680at 235.909 kb on + strand, within EX31_RS03680at 235.951 kb on + strand, within EX31_RS03680at 235.951 kb on + strand, within EX31_RS03680at 235.951 kb on + strand, within EX31_RS03680at 235.952 kb on - strand, within EX31_RS03680at 235.952 kb on - strand, within EX31_RS03680at 235.952 kb on - strand, within EX31_RS03680at 235.974 kb on + strand, within EX31_RS03680at 235.983 kb on + strand, within EX31_RS03680at 236.025 kb on + strand, within EX31_RS03680at 236.043 kb on - strand, within EX31_RS03680at 236.149 kb on + strand, within EX31_RS03680at 236.150 kb on - strand, within EX31_RS03680at 236.150 kb on - strand, within EX31_RS03680at 236.173 kb on - strand, within EX31_RS03680at 236.173 kb on - strand, within EX31_RS03680at 236.173 kb on - strand, within EX31_RS03680at 236.189 kb on - strand, within EX31_RS03680at 236.440 kb on + strand, within EX31_RS03680at 236.440 kb on + strand, within EX31_RS03680at 236.440 kb on + strand, within EX31_RS03680at 236.440 kb on + strand, within EX31_RS03680at 236.441 kb on - strand, within EX31_RS03680at 236.441 kb on - strand, within EX31_RS03680at 236.441 kb on - strand, within EX31_RS03680at 236.458 kb on + strand, within EX31_RS03680at 236.458 kb on + strand, within EX31_RS03680at 236.458 kb on + strand, within EX31_RS03680at 236.458 kb on + strand, within EX31_RS03680at 236.459 kb on - strand, within EX31_RS03680at 236.459 kb on - strand, within EX31_RS03680at 236.507 kb on - strand, within EX31_RS03680at 236.507 kb on - strand, within EX31_RS03680at 236.560 kb on + strand, within EX31_RS03680at 236.695 kb on - strand, within EX31_RS03680at 236.734 kb on + strand, within EX31_RS03680at 236.735 kb on - strand, within EX31_RS03680at 236.735 kb on - strand, within EX31_RS03680at 236.735 kb on - strand, within EX31_RS03680at 236.867 kb on + strandat 236.867 kb on + strandat 236.867 kb on + strandat 236.867 kb on + strandat 236.868 kb on - strandat 236.868 kb on - strandat 236.868 kb on - strandat 236.868 kb on - strandat 236.873 kb on + strandat 236.873 kb on + strandat 236.873 kb on + strandat 236.874 kb on - strandat 236.880 kb on + strandat 236.880 kb on + strandat 236.880 kb on + strandat 236.881 kb on - strandat 236.961 kb on + strandat 236.999 kb on + strandat 236.999 kb on + strandat 237.000 kb on - strandat 237.051 kb on + strandat 237.051 kb on + strandat 237.052 kb on - strandat 237.052 kb on - strandat 237.052 kb on - strandat 237.052 kb on - strandat 237.070 kb on + strandat 237.070 kb on + strandat 237.071 kb on - strandat 237.266 kb on - strand, within EX31_RS03685at 237.296 kb on + strand, within EX31_RS03685at 237.296 kb on + strand, within EX31_RS03685at 237.299 kb on + strand, within EX31_RS03685at 237.299 kb on + strand, within EX31_RS03685at 237.299 kb on + strand, within EX31_RS03685at 237.322 kb on - strand, within EX31_RS03685at 237.410 kb on + strand, within EX31_RS03685at 237.414 kb on + strand, within EX31_RS03685at 237.414 kb on + strand, within EX31_RS03685at 237.414 kb on + strand, within EX31_RS03685at 237.414 kb on + strand, within EX31_RS03685at 237.414 kb on + strand, within EX31_RS03685at 237.415 kb on - strand, within EX31_RS03685at 237.415 kb on - strand, within EX31_RS03685at 237.415 kb on - strand, within EX31_RS03685at 237.415 kb on - strand, within EX31_RS03685at 237.415 kb on - strand, within EX31_RS03685at 237.415 kb on - strand, within EX31_RS03685at 237.480 kb on + strand, within EX31_RS03685at 237.480 kb on + strand, within EX31_RS03685at 237.480 kb on + strand, within EX31_RS03685at 237.480 kb on + strand, within EX31_RS03685at 237.480 kb on + strand, within EX31_RS03685at 237.481 kb on - strand, within EX31_RS03685at 237.481 kb on - strand, within EX31_RS03685at 237.481 kb on - strand, within EX31_RS03685at 237.484 kb on - strand, within EX31_RS03685at 237.590 kb on + strand, within EX31_RS03685at 237.590 kb on + strand, within EX31_RS03685at 237.590 kb on + strand, within EX31_RS03685at 237.590 kb on + strand, within EX31_RS03685at 237.591 kb on - strand, within EX31_RS03685at 237.591 kb on - strand, within EX31_RS03685at 237.591 kb on - strand, within EX31_RS03685at 237.591 kb on - strand, within EX31_RS03685at 237.591 kb on - strand, within EX31_RS03685at 237.654 kb on + strand, within EX31_RS03685at 237.654 kb on + strand, within EX31_RS03685at 237.654 kb on + strand, within EX31_RS03685at 237.654 kb on + strand, within EX31_RS03685at 237.654 kb on + strand, within EX31_RS03685at 237.654 kb on + strand, within EX31_RS03685at 237.654 kb on + strand, within EX31_RS03685at 237.654 kb on + strand, within EX31_RS03685at 237.654 kb on + strand, within EX31_RS03685at 237.654 kb on + strand, within EX31_RS03685at 237.654 kb on + strand, within EX31_RS03685at 237.654 kb on + strand, within EX31_RS03685at 237.654 kb on + strand, within EX31_RS03685at 237.654 kb on + strand, within EX31_RS03685at 237.654 kb on + strand, within EX31_RS03685at 237.654 kb on + strand, within EX31_RS03685at 237.654 kb on + strand, within EX31_RS03685at 237.654 kb on + strand, within EX31_RS03685at 237.655 kb on - strand, within EX31_RS03685at 237.655 kb on - strand, within EX31_RS03685at 237.655 kb on - strand, within EX31_RS03685at 237.655 kb on - strand, within EX31_RS03685at 237.655 kb on - strand, within EX31_RS03685at 237.655 kb on - strand, within EX31_RS03685at 237.655 kb on - strand, within EX31_RS03685at 237.655 kb on - strand, within EX31_RS03685at 237.655 kb on - strand, within EX31_RS03685at 237.655 kb on - strand, within EX31_RS03685at 237.655 kb on - strand, within EX31_RS03685at 237.655 kb on - strand, within EX31_RS03685at 237.655 kb on - strand, within EX31_RS03685at 237.655 kb on - strand, within EX31_RS03685at 237.655 kb on - strand, within EX31_RS03685at 237.683 kb on + strand, within EX31_RS03685at 237.684 kb on - strand, within EX31_RS03685at 237.858 kb on - strand, within EX31_RS03685at 237.905 kb on - strand, within EX31_RS03685at 237.913 kb on - strand, within EX31_RS03685at 237.962 kb on + strand, within EX31_RS03685at 237.963 kb on - strand, within EX31_RS03685at 237.963 kb on - strand, within EX31_RS03685

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; no shaking
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234,518 - EX31_RS03675 0.86 +0.7
234,518 - EX31_RS03675 0.86 +0.4
234,518 - EX31_RS03675 0.86 -0.7
234,532 + EX31_RS03675 0.88 +1.2
234,626 + -0.1
234,626 + +1.3
234,626 + +0.4
234,627 - -0.6
234,665 - +1.9
234,665 - +1.4
234,701 - -0.5
234,746 - +0.5
234,902 + -0.6
234,930 + -0.3
234,931 - -0.4
234,931 - +1.0
234,931 - +0.3
234,952 - -1.6
234,954 + -0.8
234,959 - -0.6
235,006 + +0.6
235,131 + -2.2
235,131 + -1.5
235,131 + -0.6
235,131 + -2.6
235,131 + -2.0
235,131 + -0.5
235,131 + -0.4
235,132 - -2.5
235,156 + +0.0
235,156 + +0.5
235,156 + -0.8
235,235 + EX31_RS25915 0.26 +0.8
235,235 + EX31_RS25915 0.26 +0.2
235,241 + EX31_RS25915 0.33 -0.1
235,241 + EX31_RS25915 0.33 +1.2
235,241 + EX31_RS25915 0.33 -0.1
235,241 + EX31_RS25915 0.33 -0.1
235,241 + EX31_RS25915 0.33 +0.5
235,241 + EX31_RS25915 0.33 +0.1
235,242 - EX31_RS25915 0.35 -1.8
235,244 + EX31_RS25915 0.37 -1.8
235,245 - EX31_RS25915 0.38 -1.0
235,245 - EX31_RS25915 0.38 -0.2
235,258 + EX31_RS25915 0.54 +0.3
235,258 + EX31_RS25915 0.54 -0.3
235,259 - EX31_RS25915 0.55 -0.2
235,315 + -0.7
235,315 + +0.5
235,315 + -0.5
235,346 - -1.6
235,367 + +0.2
235,384 + +0.4
235,385 - -2.5
235,446 - -1.3
235,446 - -1.8
235,446 - -0.2
235,464 + -2.9
235,629 + EX31_RS03680 0.15 -2.9
235,652 + EX31_RS03680 0.16 -1.6
235,653 - EX31_RS03680 0.17 -0.7
235,653 - EX31_RS03680 0.17 -1.5
235,653 - EX31_RS03680 0.17 -2.9
235,653 - EX31_RS03680 0.17 -2.9
235,698 + EX31_RS03680 0.19 -2.1
235,698 + EX31_RS03680 0.19 +0.6
235,742 + EX31_RS03680 0.22 -3.5
235,742 + EX31_RS03680 0.22 -2.4
235,742 + EX31_RS03680 0.22 -1.3
235,779 + EX31_RS03680 0.24 -2.4
235,783 + EX31_RS03680 0.25 -2.2
235,783 + EX31_RS03680 0.25 -2.4
235,783 + EX31_RS03680 0.25 -1.4
235,783 + EX31_RS03680 0.25 -2.5
235,784 - EX31_RS03680 0.25 -3.6
235,784 - EX31_RS03680 0.25 -4.9
235,784 - EX31_RS03680 0.25 -1.0
235,784 - EX31_RS03680 0.25 -2.4
235,784 - EX31_RS03680 0.25 -2.4
235,784 - EX31_RS03680 0.25 -3.0
235,909 + EX31_RS03680 0.33 -1.4
235,909 + EX31_RS03680 0.33 -1.4
235,951 + EX31_RS03680 0.35 -1.4
235,951 + EX31_RS03680 0.35 -0.2
235,951 + EX31_RS03680 0.35 -1.4
235,952 - EX31_RS03680 0.35 -0.8
235,952 - EX31_RS03680 0.35 -2.3
235,952 - EX31_RS03680 0.35 -1.3
235,974 + EX31_RS03680 0.37 -2.2
235,983 + EX31_RS03680 0.37 -2.7
236,025 + EX31_RS03680 0.40 -1.9
236,043 - EX31_RS03680 0.41 -2.2
236,149 + EX31_RS03680 0.48 -1.3
236,150 - EX31_RS03680 0.48 -2.4
236,150 - EX31_RS03680 0.48 -2.6
236,173 - EX31_RS03680 0.49 -2.6
236,173 - EX31_RS03680 0.49 -3.5
236,173 - EX31_RS03680 0.49 -3.0
236,189 - EX31_RS03680 0.50 -2.9
236,440 + EX31_RS03680 0.66 -1.9
236,440 + EX31_RS03680 0.66 -1.5
236,440 + EX31_RS03680 0.66 -3.2
236,440 + EX31_RS03680 0.66 -1.5
236,441 - EX31_RS03680 0.66 -3.7
236,441 - EX31_RS03680 0.66 -3.7
236,441 - EX31_RS03680 0.66 -2.7
236,458 + EX31_RS03680 0.67 -2.2
236,458 + EX31_RS03680 0.67 -1.4
236,458 + EX31_RS03680 0.67 -1.2
236,458 + EX31_RS03680 0.67 -3.1
236,459 - EX31_RS03680 0.67 -3.6
236,459 - EX31_RS03680 0.67 -1.5
236,507 - EX31_RS03680 0.70 -2.6
236,507 - EX31_RS03680 0.70 -4.1
236,560 + EX31_RS03680 0.74 -2.6
236,695 - EX31_RS03680 0.82 -2.4
236,734 + EX31_RS03680 0.85 -1.0
236,735 - EX31_RS03680 0.85 -1.3
236,735 - EX31_RS03680 0.85 -2.8
236,735 - EX31_RS03680 0.85 -2.6
236,867 + -1.2
236,867 + +0.6
236,867 + -0.1
236,867 + -1.1
236,868 - -3.1
236,868 - -3.7
236,868 - -1.4
236,868 - -3.1
236,873 + +0.0
236,873 + -0.3
236,873 + +0.3
236,874 - -3.5
236,880 + +0.6
236,880 + -1.4
236,880 + -0.2
236,881 - -5.0
236,961 + -2.5
236,999 + -2.4
236,999 + -2.1
237,000 - +0.2
237,051 + -2.7
237,051 + -2.1
237,052 - -3.4
237,052 - -2.8
237,052 - -2.3
237,052 - -1.9
237,070 + -4.0
237,070 + -3.2
237,071 - -1.8
237,266 - EX31_RS03685 0.26 -3.5
237,296 + EX31_RS03685 0.29 -4.8
237,296 + EX31_RS03685 0.29 -2.2
237,299 + EX31_RS03685 0.29 -2.5
237,299 + EX31_RS03685 0.29 -3.0
237,299 + EX31_RS03685 0.29 -3.0
237,322 - EX31_RS03685 0.31 -2.8
237,410 + EX31_RS03685 0.39 -3.5
237,414 + EX31_RS03685 0.40 -2.5
237,414 + EX31_RS03685 0.40 -4.6
237,414 + EX31_RS03685 0.40 -2.0
237,414 + EX31_RS03685 0.40 -2.0
237,414 + EX31_RS03685 0.40 -4.4
237,415 - EX31_RS03685 0.40 -2.9
237,415 - EX31_RS03685 0.40 -1.6
237,415 - EX31_RS03685 0.40 -2.7
237,415 - EX31_RS03685 0.40 -3.0
237,415 - EX31_RS03685 0.40 +0.2
237,415 - EX31_RS03685 0.40 -2.2
237,480 + EX31_RS03685 0.46 -4.0
237,480 + EX31_RS03685 0.46 -3.0
237,480 + EX31_RS03685 0.46 -2.5
237,480 + EX31_RS03685 0.46 -2.5
237,480 + EX31_RS03685 0.46 -1.8
237,481 - EX31_RS03685 0.46 +0.2
237,481 - EX31_RS03685 0.46 -3.3
237,481 - EX31_RS03685 0.46 -4.1
237,484 - EX31_RS03685 0.46 -2.4
237,590 + EX31_RS03685 0.56 -3.0
237,590 + EX31_RS03685 0.56 -3.2
237,590 + EX31_RS03685 0.56 -5.0
237,590 + EX31_RS03685 0.56 -2.6
237,591 - EX31_RS03685 0.56 -3.7
237,591 - EX31_RS03685 0.56 -2.4
237,591 - EX31_RS03685 0.56 -1.7
237,591 - EX31_RS03685 0.56 -3.0
237,591 - EX31_RS03685 0.56 -3.0
237,654 + EX31_RS03685 0.62 -4.0
237,654 + EX31_RS03685 0.62 -3.0
237,654 + EX31_RS03685 0.62 -2.6
237,654 + EX31_RS03685 0.62 -3.7
237,654 + EX31_RS03685 0.62 -2.5
237,654 + EX31_RS03685 0.62 -2.0
237,654 + EX31_RS03685 0.62 -4.5
237,654 + EX31_RS03685 0.62 -3.9
237,654 + EX31_RS03685 0.62 -2.6
237,654 + EX31_RS03685 0.62 -3.1
237,654 + EX31_RS03685 0.62 -3.2
237,654 + EX31_RS03685 0.62 -3.2
237,654 + EX31_RS03685 0.62 -3.0
237,654 + EX31_RS03685 0.62 -3.6
237,654 + EX31_RS03685 0.62 -1.3
237,654 + EX31_RS03685 0.62 -3.6
237,654 + EX31_RS03685 0.62 -2.9
237,654 + EX31_RS03685 0.62 -2.4
237,655 - EX31_RS03685 0.62 -3.9
237,655 - EX31_RS03685 0.62 -3.3
237,655 - EX31_RS03685 0.62 -1.6
237,655 - EX31_RS03685 0.62 +2.2
237,655 - EX31_RS03685 0.62 -1.4
237,655 - EX31_RS03685 0.62 -2.1
237,655 - EX31_RS03685 0.62 -2.6
237,655 - EX31_RS03685 0.62 -0.6
237,655 - EX31_RS03685 0.62 -0.6
237,655 - EX31_RS03685 0.62 -3.0
237,655 - EX31_RS03685 0.62 -1.6
237,655 - EX31_RS03685 0.62 -4.0
237,655 - EX31_RS03685 0.62 -1.3
237,655 - EX31_RS03685 0.62 -2.0
237,655 - EX31_RS03685 0.62 +0.2
237,683 + EX31_RS03685 0.64 -2.6
237,684 - EX31_RS03685 0.64 -3.5
237,858 - EX31_RS03685 0.80 -2.5
237,905 - EX31_RS03685 0.85 -3.5
237,913 - EX31_RS03685 0.85 -1.8
237,962 + EX31_RS03685 0.90 -2.3
237,963 - EX31_RS03685 0.90 -2.4
237,963 - EX31_RS03685 0.90 -3.4

Or see this region's nucleotide sequence