Strain Fitness in Rahnella sp. WP5 around EX31_RS02550

Experiment: Ammonium chloride (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02545 and EX31_RS02550 overlap by 11 nucleotidesEX31_RS02550 and EX31_RS02555 overlap by 4 nucleotidesEX31_RS02555 and EX31_RS02560 overlap by 8 nucleotidesEX31_RS02560 and EX31_RS02565 overlap by 26 nucleotides EX31_RS02545: EX31_RS02545 - alpha/beta hydrolase, at 540,626 to 541,681 _RS02545 EX31_RS02550: EX31_RS02550 - MATE family efflux transporter, at 541,671 to 543,023 _RS02550 EX31_RS02555: EX31_RS02555 - hypothetical protein, at 543,020 to 543,661 _RS02555 EX31_RS02560: EX31_RS02560 - hypothetical protein, at 543,654 to 543,914 _RS02560 EX31_RS02565: EX31_RS02565 - 3-oxoacyl-ACP synthase, at 543,889 to 544,848 _RS02565 Position (kb) 541 542 543 544Strain fitness (log2 ratio) -2 -1 0 1 2at 540.736 kb on + strand, within EX31_RS02545at 540.761 kb on + strand, within EX31_RS02545at 540.940 kb on - strand, within EX31_RS02545at 540.991 kb on + strand, within EX31_RS02545at 541.207 kb on + strand, within EX31_RS02545at 541.208 kb on - strand, within EX31_RS02545at 541.208 kb on - strand, within EX31_RS02545at 541.283 kb on + strand, within EX31_RS02545at 541.284 kb on - strand, within EX31_RS02545at 541.284 kb on - strand, within EX31_RS02545at 541.284 kb on - strand, within EX31_RS02545at 541.286 kb on - strand, within EX31_RS02545at 541.429 kb on + strand, within EX31_RS02545at 541.470 kb on + strand, within EX31_RS02545at 541.471 kb on - strand, within EX31_RS02545at 541.471 kb on - strand, within EX31_RS02545at 541.509 kb on + strand, within EX31_RS02545at 541.510 kb on - strand, within EX31_RS02545at 541.565 kb on + strand, within EX31_RS02545at 541.566 kb on - strand, within EX31_RS02545at 541.566 kb on - strand, within EX31_RS02545at 541.793 kb on + strandat 541.968 kb on + strand, within EX31_RS02550at 541.968 kb on + strand, within EX31_RS02550at 542.038 kb on + strand, within EX31_RS02550at 542.042 kb on + strand, within EX31_RS02550at 542.042 kb on + strand, within EX31_RS02550at 542.042 kb on + strand, within EX31_RS02550at 542.051 kb on + strand, within EX31_RS02550at 542.124 kb on + strand, within EX31_RS02550at 542.206 kb on + strand, within EX31_RS02550at 542.206 kb on + strand, within EX31_RS02550at 542.206 kb on + strand, within EX31_RS02550at 542.423 kb on + strand, within EX31_RS02550at 542.494 kb on + strand, within EX31_RS02550at 542.494 kb on + strand, within EX31_RS02550at 542.494 kb on + strand, within EX31_RS02550at 542.494 kb on + strand, within EX31_RS02550at 542.494 kb on + strand, within EX31_RS02550at 542.494 kb on + strand, within EX31_RS02550at 542.517 kb on + strand, within EX31_RS02550at 542.552 kb on + strand, within EX31_RS02550at 542.756 kb on + strand, within EX31_RS02550at 542.757 kb on - strand, within EX31_RS02550at 542.757 kb on - strand, within EX31_RS02550at 542.792 kb on + strand, within EX31_RS02550at 543.017 kb on + strandat 543.017 kb on + strandat 543.018 kb on - strandat 543.018 kb on - strandat 543.023 kb on + strandat 543.109 kb on - strand, within EX31_RS02555at 543.109 kb on - strand, within EX31_RS02555at 543.134 kb on + strand, within EX31_RS02555at 543.139 kb on - strand, within EX31_RS02555at 543.217 kb on - strand, within EX31_RS02555at 543.217 kb on - strand, within EX31_RS02555at 543.217 kb on - strand, within EX31_RS02555at 543.229 kb on + strand, within EX31_RS02555at 543.300 kb on - strand, within EX31_RS02555at 543.481 kb on + strand, within EX31_RS02555at 543.482 kb on - strand, within EX31_RS02555at 543.702 kb on - strand, within EX31_RS02560at 543.802 kb on - strand, within EX31_RS02560at 543.928 kb on - strandat 543.951 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; no shaking
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540,736 + EX31_RS02545 0.10 -1.1
540,761 + EX31_RS02545 0.13 +0.2
540,940 - EX31_RS02545 0.30 +0.9
540,991 + EX31_RS02545 0.35 -0.4
541,207 + EX31_RS02545 0.55 +0.8
541,208 - EX31_RS02545 0.55 -0.4
541,208 - EX31_RS02545 0.55 -2.0
541,283 + EX31_RS02545 0.62 +1.9
541,284 - EX31_RS02545 0.62 -1.2
541,284 - EX31_RS02545 0.62 -0.1
541,284 - EX31_RS02545 0.62 -0.2
541,286 - EX31_RS02545 0.62 +0.3
541,429 + EX31_RS02545 0.76 +0.1
541,470 + EX31_RS02545 0.80 +0.6
541,471 - EX31_RS02545 0.80 +1.0
541,471 - EX31_RS02545 0.80 -1.2
541,509 + EX31_RS02545 0.84 -0.2
541,510 - EX31_RS02545 0.84 +1.1
541,565 + EX31_RS02545 0.89 +1.7
541,566 - EX31_RS02545 0.89 +0.0
541,566 - EX31_RS02545 0.89 -0.3
541,793 + +0.8
541,968 + EX31_RS02550 0.22 +0.6
541,968 + EX31_RS02550 0.22 -1.3
542,038 + EX31_RS02550 0.27 -1.9
542,042 + EX31_RS02550 0.27 +0.6
542,042 + EX31_RS02550 0.27 +0.6
542,042 + EX31_RS02550 0.27 +0.1
542,051 + EX31_RS02550 0.28 -1.0
542,124 + EX31_RS02550 0.33 +1.0
542,206 + EX31_RS02550 0.40 +0.6
542,206 + EX31_RS02550 0.40 +2.1
542,206 + EX31_RS02550 0.40 +0.1
542,423 + EX31_RS02550 0.56 -2.0
542,494 + EX31_RS02550 0.61 -0.8
542,494 + EX31_RS02550 0.61 +0.9
542,494 + EX31_RS02550 0.61 +1.3
542,494 + EX31_RS02550 0.61 -0.1
542,494 + EX31_RS02550 0.61 -1.2
542,494 + EX31_RS02550 0.61 +1.1
542,517 + EX31_RS02550 0.63 -0.9
542,552 + EX31_RS02550 0.65 -1.1
542,756 + EX31_RS02550 0.80 -0.4
542,757 - EX31_RS02550 0.80 -0.7
542,757 - EX31_RS02550 0.80 -0.2
542,792 + EX31_RS02550 0.83 -1.9
543,017 + -0.7
543,017 + +0.3
543,018 - -0.1
543,018 - -0.9
543,023 + -0.1
543,109 - EX31_RS02555 0.14 +1.1
543,109 - EX31_RS02555 0.14 -0.5
543,134 + EX31_RS02555 0.18 -0.7
543,139 - EX31_RS02555 0.19 -1.0
543,217 - EX31_RS02555 0.31 +0.3
543,217 - EX31_RS02555 0.31 -0.3
543,217 - EX31_RS02555 0.31 -1.2
543,229 + EX31_RS02555 0.33 -1.0
543,300 - EX31_RS02555 0.44 +1.2
543,481 + EX31_RS02555 0.72 -1.2
543,482 - EX31_RS02555 0.72 -0.2
543,702 - EX31_RS02560 0.18 +2.1
543,802 - EX31_RS02560 0.57 -0.0
543,928 - +0.8
543,951 + -0.2

Or see this region's nucleotide sequence