Experiment: Ammonium chloride (N); ShewMM media; no shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01850 and EX31_RS01855 are separated by 31 nucleotides EX31_RS01855 and EX31_RS01860 are separated by 11 nucleotides
EX31_RS01850: EX31_RS01850 - type VI secretion system contractile sheath small subunit, at 400,107 to 400,601
_RS01850
EX31_RS01855: EX31_RS01855 - type VI secretion system contractile sheath large subunit, at 400,633 to 402,180
_RS01855
EX31_RS01860: EX31_RS01860 - type VI secretion system baseplate subunit TssK, at 402,192 to 403,529
_RS01860
Position (kb) 400
401
402
403 Strain fitness (log2 ratio) -2
-1
0
1
2 at 400.057 kb on - strand at 400.095 kb on + strand at 400.115 kb on + strand at 400.165 kb on + strand, within EX31_RS01850 at 400.471 kb on + strand, within EX31_RS01850 at 400.474 kb on + strand, within EX31_RS01850 at 400.474 kb on + strand, within EX31_RS01850 at 400.474 kb on + strand, within EX31_RS01850 at 400.475 kb on - strand, within EX31_RS01850 at 400.475 kb on - strand, within EX31_RS01850 at 400.577 kb on + strand at 400.578 kb on - strand at 400.599 kb on + strand at 400.600 kb on - strand at 400.613 kb on + strand at 400.632 kb on - strand at 400.710 kb on - strand at 400.711 kb on + strand at 400.711 kb on + strand at 400.711 kb on + strand at 400.712 kb on - strand at 400.728 kb on + strand at 400.854 kb on + strand, within EX31_RS01855 at 400.943 kb on + strand, within EX31_RS01855 at 400.943 kb on + strand, within EX31_RS01855 at 400.944 kb on - strand, within EX31_RS01855 at 400.944 kb on - strand, within EX31_RS01855 at 401.060 kb on + strand, within EX31_RS01855 at 401.061 kb on - strand, within EX31_RS01855 at 401.131 kb on - strand, within EX31_RS01855 at 401.131 kb on - strand, within EX31_RS01855 at 401.134 kb on + strand, within EX31_RS01855 at 401.134 kb on + strand, within EX31_RS01855 at 401.134 kb on + strand, within EX31_RS01855 at 401.134 kb on + strand, within EX31_RS01855 at 401.134 kb on + strand, within EX31_RS01855 at 401.134 kb on + strand, within EX31_RS01855 at 401.135 kb on - strand, within EX31_RS01855 at 401.135 kb on - strand, within EX31_RS01855 at 401.135 kb on - strand, within EX31_RS01855 at 401.135 kb on - strand, within EX31_RS01855 at 401.146 kb on + strand, within EX31_RS01855 at 401.146 kb on + strand, within EX31_RS01855 at 401.147 kb on - strand, within EX31_RS01855 at 401.241 kb on + strand, within EX31_RS01855 at 401.246 kb on + strand, within EX31_RS01855 at 401.263 kb on - strand, within EX31_RS01855 at 401.347 kb on + strand, within EX31_RS01855 at 401.347 kb on + strand, within EX31_RS01855 at 401.347 kb on + strand, within EX31_RS01855 at 401.348 kb on - strand, within EX31_RS01855 at 401.348 kb on - strand, within EX31_RS01855 at 401.366 kb on - strand, within EX31_RS01855 at 401.407 kb on + strand, within EX31_RS01855 at 401.485 kb on + strand, within EX31_RS01855 at 401.485 kb on + strand, within EX31_RS01855 at 401.522 kb on - strand, within EX31_RS01855 at 401.651 kb on - strand, within EX31_RS01855 at 401.651 kb on - strand, within EX31_RS01855 at 401.771 kb on - strand, within EX31_RS01855 at 401.771 kb on - strand, within EX31_RS01855 at 401.820 kb on + strand, within EX31_RS01855 at 401.866 kb on + strand, within EX31_RS01855 at 401.867 kb on - strand, within EX31_RS01855 at 401.897 kb on - strand, within EX31_RS01855 at 402.129 kb on + strand at 402.165 kb on + strand at 402.165 kb on + strand at 402.172 kb on - strand at 402.297 kb on - strand at 402.454 kb on + strand, within EX31_RS01860 at 402.499 kb on + strand, within EX31_RS01860 at 402.499 kb on + strand, within EX31_RS01860 at 402.499 kb on + strand, within EX31_RS01860 at 402.499 kb on + strand, within EX31_RS01860 at 402.499 kb on + strand, within EX31_RS01860 at 402.694 kb on + strand, within EX31_RS01860 at 402.694 kb on + strand, within EX31_RS01860 at 402.694 kb on + strand, within EX31_RS01860 at 402.694 kb on + strand, within EX31_RS01860 at 402.695 kb on - strand, within EX31_RS01860 at 402.695 kb on - strand, within EX31_RS01860 at 402.695 kb on - strand, within EX31_RS01860 at 402.695 kb on - strand, within EX31_RS01860 at 402.695 kb on - strand, within EX31_RS01860 at 402.802 kb on + strand, within EX31_RS01860 at 402.892 kb on + strand, within EX31_RS01860 at 402.892 kb on + strand, within EX31_RS01860 at 402.892 kb on + strand, within EX31_RS01860 at 402.892 kb on + strand, within EX31_RS01860 at 402.893 kb on - strand, within EX31_RS01860 at 402.893 kb on - strand, within EX31_RS01860 at 402.893 kb on - strand, within EX31_RS01860 at 402.984 kb on + strand, within EX31_RS01860 at 403.037 kb on + strand, within EX31_RS01860 at 403.038 kb on - strand, within EX31_RS01860 at 403.059 kb on + strand, within EX31_RS01860 at 403.068 kb on - strand, within EX31_RS01860 at 403.068 kb on - strand, within EX31_RS01860 at 403.143 kb on - strand, within EX31_RS01860 at 403.143 kb on - strand, within EX31_RS01860 at 403.143 kb on - strand, within EX31_RS01860
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; no shaking remove 400,057 - +0.4 400,095 + -1.4 400,115 + -0.0 400,165 + EX31_RS01850 0.12 +0.6 400,471 + EX31_RS01850 0.74 +1.1 400,474 + EX31_RS01850 0.74 +0.1 400,474 + EX31_RS01850 0.74 +0.6 400,474 + EX31_RS01850 0.74 -0.4 400,475 - EX31_RS01850 0.74 +2.0 400,475 - EX31_RS01850 0.74 +0.9 400,577 + -1.4 400,578 - +0.1 400,599 + +1.5 400,600 - +1.0 400,613 + -0.1 400,632 - +1.1 400,710 - +1.0 400,711 + -0.7 400,711 + +0.9 400,711 + +0.8 400,712 - +0.1 400,728 + -1.1 400,854 + EX31_RS01855 0.14 +0.9 400,943 + EX31_RS01855 0.20 +1.1 400,943 + EX31_RS01855 0.20 +0.4 400,944 - EX31_RS01855 0.20 -0.8 400,944 - EX31_RS01855 0.20 -0.6 401,060 + EX31_RS01855 0.28 -0.6 401,061 - EX31_RS01855 0.28 +1.0 401,131 - EX31_RS01855 0.32 -2.2 401,131 - EX31_RS01855 0.32 +0.6 401,134 + EX31_RS01855 0.32 -0.5 401,134 + EX31_RS01855 0.32 +0.1 401,134 + EX31_RS01855 0.32 +1.4 401,134 + EX31_RS01855 0.32 -2.2 401,134 + EX31_RS01855 0.32 +1.1 401,134 + EX31_RS01855 0.32 -0.4 401,135 - EX31_RS01855 0.32 -1.3 401,135 - EX31_RS01855 0.32 +0.4 401,135 - EX31_RS01855 0.32 +0.8 401,135 - EX31_RS01855 0.32 -1.7 401,146 + EX31_RS01855 0.33 +2.0 401,146 + EX31_RS01855 0.33 -0.4 401,147 - EX31_RS01855 0.33 +2.5 401,241 + EX31_RS01855 0.39 +0.8 401,246 + EX31_RS01855 0.40 -0.4 401,263 - EX31_RS01855 0.41 +0.9 401,347 + EX31_RS01855 0.46 +0.8 401,347 + EX31_RS01855 0.46 -0.6 401,347 + EX31_RS01855 0.46 +0.3 401,348 - EX31_RS01855 0.46 +0.1 401,348 - EX31_RS01855 0.46 -1.4 401,366 - EX31_RS01855 0.47 +2.1 401,407 + EX31_RS01855 0.50 +0.5 401,485 + EX31_RS01855 0.55 +1.1 401,485 + EX31_RS01855 0.55 -1.0 401,522 - EX31_RS01855 0.57 -1.7 401,651 - EX31_RS01855 0.66 +1.0 401,651 - EX31_RS01855 0.66 +0.2 401,771 - EX31_RS01855 0.74 -1.1 401,771 - EX31_RS01855 0.74 -0.9 401,820 + EX31_RS01855 0.77 +1.1 401,866 + EX31_RS01855 0.80 -1.1 401,867 - EX31_RS01855 0.80 +0.4 401,897 - EX31_RS01855 0.82 -1.1 402,129 + -0.1 402,165 + -0.6 402,165 + -1.0 402,172 - +0.1 402,297 - -0.7 402,454 + EX31_RS01860 0.20 -0.1 402,499 + EX31_RS01860 0.23 -0.7 402,499 + EX31_RS01860 0.23 -0.2 402,499 + EX31_RS01860 0.23 +0.4 402,499 + EX31_RS01860 0.23 +1.0 402,499 + EX31_RS01860 0.23 +0.1 402,694 + EX31_RS01860 0.38 -1.6 402,694 + EX31_RS01860 0.38 -0.4 402,694 + EX31_RS01860 0.38 +1.6 402,694 + EX31_RS01860 0.38 -1.3 402,695 - EX31_RS01860 0.38 -0.0 402,695 - EX31_RS01860 0.38 -1.3 402,695 - EX31_RS01860 0.38 +0.6 402,695 - EX31_RS01860 0.38 +0.0 402,695 - EX31_RS01860 0.38 -1.3 402,802 + EX31_RS01860 0.46 -0.4 402,892 + EX31_RS01860 0.52 -0.7 402,892 + EX31_RS01860 0.52 +0.3 402,892 + EX31_RS01860 0.52 -0.4 402,892 + EX31_RS01860 0.52 -0.1 402,893 - EX31_RS01860 0.52 +2.1 402,893 - EX31_RS01860 0.52 -1.4 402,893 - EX31_RS01860 0.52 +0.6 402,984 + EX31_RS01860 0.59 -0.7 403,037 + EX31_RS01860 0.63 +1.6 403,038 - EX31_RS01860 0.63 +0.9 403,059 + EX31_RS01860 0.65 +0.6 403,068 - EX31_RS01860 0.65 -0.7 403,068 - EX31_RS01860 0.65 +0.2 403,143 - EX31_RS01860 0.71 -1.1 403,143 - EX31_RS01860 0.71 +2.1 403,143 - EX31_RS01860 0.71 +0.3
Or see this region's nucleotide sequence