Experiment: L-Glutamic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03753 and CCNA_03754 overlap by 20 nucleotides CCNA_03754 and CCNA_03755 are separated by 119 nucleotides
CCNA_03753: CCNA_03753 - iron-sulfur cluster-binding protein, at 3,922,579 to 3,923,709
_03753
CCNA_03754: CCNA_03754 - FtsZ-binding protein FzlA, at 3,923,690 to 3,924,376
_03754
CCNA_03755: CCNA_03755 - bifunctional D-glycero-D-manno-heptose-7-phosphate 1-kinase/D-glycero-D-manno-heptose-1-phosphate adenylyltransferase, at 3,924,496 to 3,925,947
_03755
Position (kb)
3923
3924
3925 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3922.710 kb on - strand, within CCNA_03753 at 3922.723 kb on + strand, within CCNA_03753 at 3922.723 kb on + strand, within CCNA_03753 at 3922.731 kb on - strand, within CCNA_03753 at 3922.739 kb on + strand, within CCNA_03753 at 3922.807 kb on - strand, within CCNA_03753 at 3922.870 kb on + strand, within CCNA_03753 at 3922.892 kb on + strand, within CCNA_03753 at 3922.901 kb on - strand, within CCNA_03753 at 3922.948 kb on - strand, within CCNA_03753 at 3922.958 kb on + strand, within CCNA_03753 at 3922.966 kb on - strand, within CCNA_03753 at 3922.972 kb on + strand, within CCNA_03753 at 3923.033 kb on + strand, within CCNA_03753 at 3923.033 kb on + strand, within CCNA_03753 at 3923.041 kb on - strand, within CCNA_03753 at 3923.071 kb on + strand, within CCNA_03753 at 3923.090 kb on - strand, within CCNA_03753 at 3923.145 kb on + strand, within CCNA_03753 at 3923.145 kb on + strand, within CCNA_03753 at 3923.146 kb on + strand, within CCNA_03753 at 3923.153 kb on - strand, within CCNA_03753 at 3923.153 kb on - strand, within CCNA_03753 at 3923.153 kb on - strand, within CCNA_03753 at 3923.153 kb on - strand, within CCNA_03753 at 3923.153 kb on - strand, within CCNA_03753 at 3923.153 kb on - strand, within CCNA_03753 at 3923.163 kb on - strand, within CCNA_03753 at 3923.163 kb on - strand, within CCNA_03753 at 3923.199 kb on + strand, within CCNA_03753 at 3923.227 kb on + strand, within CCNA_03753 at 3923.235 kb on - strand, within CCNA_03753 at 3923.235 kb on - strand, within CCNA_03753 at 3923.240 kb on - strand, within CCNA_03753 at 3923.279 kb on + strand, within CCNA_03753 at 3923.298 kb on + strand, within CCNA_03753 at 3923.306 kb on - strand, within CCNA_03753 at 3923.323 kb on + strand, within CCNA_03753 at 3923.332 kb on - strand, within CCNA_03753 at 3923.378 kb on - strand, within CCNA_03753 at 3923.443 kb on - strand, within CCNA_03753 at 3923.473 kb on - strand, within CCNA_03753 at 3923.486 kb on + strand, within CCNA_03753 at 3923.517 kb on + strand, within CCNA_03753 at 3923.517 kb on + strand, within CCNA_03753 at 3923.520 kb on - strand, within CCNA_03753 at 3923.525 kb on - strand, within CCNA_03753 at 3923.525 kb on - strand, within CCNA_03753 at 3923.525 kb on - strand, within CCNA_03753 at 3923.525 kb on - strand, within CCNA_03753 at 3923.525 kb on - strand, within CCNA_03753 at 3923.530 kb on - strand, within CCNA_03753 at 3923.535 kb on - strand, within CCNA_03753 at 3923.557 kb on - strand, within CCNA_03753 at 3923.584 kb on - strand, within CCNA_03753 at 3923.590 kb on - strand, within CCNA_03753 at 3923.597 kb on - strand at 3923.602 kb on + strand at 3923.622 kb on - strand at 3923.681 kb on + strand at 3924.400 kb on - strand at 3924.530 kb on + strand at 3924.532 kb on - strand at 3924.532 kb on - strand at 3924.532 kb on - strand at 3924.532 kb on - strand at 3924.537 kb on - strand at 3924.608 kb on + strand at 3924.676 kb on - strand, within CCNA_03755 at 3924.741 kb on - strand, within CCNA_03755 at 3924.765 kb on - strand, within CCNA_03755 at 3924.832 kb on - strand, within CCNA_03755 at 3924.832 kb on - strand, within CCNA_03755 at 3924.875 kb on - strand, within CCNA_03755 at 3924.902 kb on - strand, within CCNA_03755 at 3925.203 kb on - strand, within CCNA_03755 at 3925.210 kb on + strand, within CCNA_03755 at 3925.359 kb on + strand, within CCNA_03755 at 3925.362 kb on - strand, within CCNA_03755 at 3925.375 kb on - strand, within CCNA_03755
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N) remove 3,922,710 - CCNA_03753 0.12 -0.7 3,922,723 + CCNA_03753 0.13 -0.8 3,922,723 + CCNA_03753 0.13 -1.8 3,922,731 - CCNA_03753 0.13 +0.8 3,922,739 + CCNA_03753 0.14 +1.5 3,922,807 - CCNA_03753 0.20 +0.6 3,922,870 + CCNA_03753 0.26 -1.0 3,922,892 + CCNA_03753 0.28 +0.7 3,922,901 - CCNA_03753 0.28 -0.6 3,922,948 - CCNA_03753 0.33 -2.0 3,922,958 + CCNA_03753 0.34 +0.2 3,922,966 - CCNA_03753 0.34 -0.1 3,922,972 + CCNA_03753 0.35 +0.1 3,923,033 + CCNA_03753 0.40 +0.7 3,923,033 + CCNA_03753 0.40 +0.2 3,923,041 - CCNA_03753 0.41 -0.3 3,923,071 + CCNA_03753 0.44 +0.0 3,923,090 - CCNA_03753 0.45 -1.3 3,923,145 + CCNA_03753 0.50 -2.6 3,923,145 + CCNA_03753 0.50 -1.4 3,923,146 + CCNA_03753 0.50 -0.5 3,923,153 - CCNA_03753 0.51 +0.5 3,923,153 - CCNA_03753 0.51 +0.4 3,923,153 - CCNA_03753 0.51 -0.3 3,923,153 - CCNA_03753 0.51 +0.4 3,923,153 - CCNA_03753 0.51 +1.1 3,923,153 - CCNA_03753 0.51 +0.7 3,923,163 - CCNA_03753 0.52 +0.5 3,923,163 - CCNA_03753 0.52 -0.3 3,923,199 + CCNA_03753 0.55 -1.4 3,923,227 + CCNA_03753 0.57 -0.1 3,923,235 - CCNA_03753 0.58 -0.4 3,923,235 - CCNA_03753 0.58 +0.3 3,923,240 - CCNA_03753 0.58 +0.9 3,923,279 + CCNA_03753 0.62 -1.1 3,923,298 + CCNA_03753 0.64 -0.2 3,923,306 - CCNA_03753 0.64 +0.8 3,923,323 + CCNA_03753 0.66 +1.6 3,923,332 - CCNA_03753 0.67 +0.1 3,923,378 - CCNA_03753 0.71 -0.5 3,923,443 - CCNA_03753 0.76 +0.1 3,923,473 - CCNA_03753 0.79 -0.9 3,923,486 + CCNA_03753 0.80 -1.4 3,923,517 + CCNA_03753 0.83 -1.5 3,923,517 + CCNA_03753 0.83 +0.5 3,923,520 - CCNA_03753 0.83 +0.8 3,923,525 - CCNA_03753 0.84 -0.6 3,923,525 - CCNA_03753 0.84 +0.3 3,923,525 - CCNA_03753 0.84 +2.1 3,923,525 - CCNA_03753 0.84 +0.1 3,923,525 - CCNA_03753 0.84 -0.0 3,923,530 - CCNA_03753 0.84 +0.5 3,923,535 - CCNA_03753 0.85 +0.5 3,923,557 - CCNA_03753 0.86 -1.0 3,923,584 - CCNA_03753 0.89 +0.8 3,923,590 - CCNA_03753 0.89 +0.0 3,923,597 - +1.4 3,923,602 + -1.9 3,923,622 - +0.2 3,923,681 + -0.6 3,924,400 - +1.3 3,924,530 + -1.7 3,924,532 - +1.0 3,924,532 - +1.0 3,924,532 - -0.6 3,924,532 - -0.3 3,924,537 - -2.8 3,924,608 + -1.9 3,924,676 - CCNA_03755 0.12 -1.4 3,924,741 - CCNA_03755 0.17 -1.6 3,924,765 - CCNA_03755 0.19 -2.9 3,924,832 - CCNA_03755 0.23 -3.1 3,924,832 - CCNA_03755 0.23 -0.6 3,924,875 - CCNA_03755 0.26 -2.0 3,924,902 - CCNA_03755 0.28 -1.9 3,925,203 - CCNA_03755 0.49 -1.0 3,925,210 + CCNA_03755 0.49 -2.0 3,925,359 + CCNA_03755 0.59 -1.3 3,925,362 - CCNA_03755 0.60 -1.1 3,925,375 - CCNA_03755 0.61 -0.6
Or see this region's nucleotide sequence