Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2741

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2740 and Ac3H11_2741 are separated by 287 nucleotidesAc3H11_2741 and Ac3H11_2742 are separated by 19 nucleotidesAc3H11_2742 and Ac3H11_2743 overlap by 4 nucleotides Ac3H11_2740 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 1,039,225 to 1,040,109 _2740 Ac3H11_2741 - 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), at 1,040,397 to 1,041,302 _2741 Ac3H11_2742 - Fumarylacetoacetate hydrolase family protein, at 1,041,322 to 1,042,167 _2742 Ac3H11_2743 - 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase (EC 4.1.1.45), at 1,042,164 to 1,043,252 _2743 Position (kb) 1040 1041 1042Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1040.179 kb on + strandat 1040.200 kb on - strandat 1040.280 kb on + strandat 1040.459 kb on - strandat 1040.511 kb on + strand, within Ac3H11_2741at 1040.512 kb on - strand, within Ac3H11_2741at 1041.084 kb on - strand, within Ac3H11_2741at 1041.294 kb on - strandat 1041.304 kb on + strandat 1041.304 kb on + strandat 1041.304 kb on + strandat 1041.304 kb on + strandat 1041.304 kb on + strandat 1041.304 kb on + strandat 1041.305 kb on - strandat 1041.323 kb on + strandat 1041.731 kb on + strand, within Ac3H11_2742at 1041.936 kb on - strand, within Ac3H11_2742at 1041.936 kb on - strand, within Ac3H11_2742

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,040,179 + -2.8
1,040,200 - -0.2
1,040,280 + +0.9
1,040,459 - +1.3
1,040,511 + Ac3H11_2741 0.13 +0.5
1,040,512 - Ac3H11_2741 0.13 -0.8
1,041,084 - Ac3H11_2741 0.76 +2.5
1,041,294 - -0.4
1,041,304 + -0.6
1,041,304 + +0.0
1,041,304 + +0.1
1,041,304 + -0.8
1,041,304 + +0.7
1,041,304 + +0.2
1,041,305 - +0.1
1,041,323 + +0.2
1,041,731 + Ac3H11_2742 0.48 -1.2
1,041,936 - Ac3H11_2742 0.73 +0.2
1,041,936 - Ac3H11_2742 0.73 -0.3

Or see this region's nucleotide sequence