Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1500

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_1498 and Ac3H11_1499 are separated by 11 nucleotidesAc3H11_1499 and Ac3H11_1500 are separated by 10 nucleotidesAc3H11_1500 and Ac3H11_1501 are separated by 267 nucleotides Ac3H11_1498 - Short-chain dehydrogenase/reductase SDR, at 78,053 to 78,850 _1498 Ac3H11_1499 - MoaF protein precursor, at 78,862 to 79,662 _1499 Ac3H11_1500 - Ketosteroid isomerase-related protein, at 79,673 to 80,065 _1500 Ac3H11_1501 - 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7), at 80,333 to 81,262 _1501 Position (kb) 79 80 81Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 78.750 kb on - strand, within Ac3H11_1498at 79.079 kb on - strand, within Ac3H11_1499at 79.079 kb on - strand, within Ac3H11_1499at 79.079 kb on - strand, within Ac3H11_1499at 79.342 kb on + strand, within Ac3H11_1499at 79.343 kb on - strand, within Ac3H11_1499at 79.343 kb on - strand, within Ac3H11_1499at 79.343 kb on - strand, within Ac3H11_1499at 79.343 kb on - strand, within Ac3H11_1499at 79.360 kb on + strand, within Ac3H11_1499at 79.360 kb on + strand, within Ac3H11_1499at 79.361 kb on - strand, within Ac3H11_1499at 79.372 kb on + strand, within Ac3H11_1499at 79.372 kb on + strand, within Ac3H11_1499at 79.372 kb on + strand, within Ac3H11_1499at 79.373 kb on - strand, within Ac3H11_1499at 79.373 kb on - strand, within Ac3H11_1499at 79.373 kb on - strand, within Ac3H11_1499at 79.390 kb on + strand, within Ac3H11_1499at 79.390 kb on + strand, within Ac3H11_1499at 79.450 kb on + strand, within Ac3H11_1499at 79.450 kb on + strand, within Ac3H11_1499at 79.451 kb on - strand, within Ac3H11_1499at 79.453 kb on + strand, within Ac3H11_1499at 79.453 kb on + strand, within Ac3H11_1499at 79.474 kb on + strand, within Ac3H11_1499at 79.474 kb on + strand, within Ac3H11_1499at 79.474 kb on + strand, within Ac3H11_1499at 79.474 kb on + strand, within Ac3H11_1499at 79.474 kb on + strand, within Ac3H11_1499at 79.475 kb on - strand, within Ac3H11_1499at 79.475 kb on - strand, within Ac3H11_1499at 79.475 kb on - strand, within Ac3H11_1499at 79.475 kb on - strand, within Ac3H11_1499at 79.636 kb on + strandat 79.636 kb on + strandat 79.637 kb on - strandat 79.709 kb on + strandat 79.931 kb on + strand, within Ac3H11_1500at 79.943 kb on + strand, within Ac3H11_1500at 79.943 kb on + strand, within Ac3H11_1500at 79.943 kb on + strand, within Ac3H11_1500at 79.986 kb on + strand, within Ac3H11_1500at 79.986 kb on + strand, within Ac3H11_1500at 79.986 kb on + strand, within Ac3H11_1500at 79.986 kb on + strand, within Ac3H11_1500at 79.986 kb on + strand, within Ac3H11_1500at 79.986 kb on + strand, within Ac3H11_1500at 79.987 kb on - strand, within Ac3H11_1500at 79.987 kb on - strand, within Ac3H11_1500at 79.987 kb on - strand, within Ac3H11_1500at 79.987 kb on - strand, within Ac3H11_1500at 79.987 kb on - strand, within Ac3H11_1500at 79.987 kb on - strand, within Ac3H11_1500at 80.088 kb on + strandat 80.242 kb on + strandat 80.242 kb on + strandat 80.242 kb on + strandat 80.242 kb on + strandat 80.242 kb on + strandat 80.243 kb on - strandat 80.329 kb on - strandat 80.655 kb on - strand, within Ac3H11_1501at 80.656 kb on - strand, within Ac3H11_1501at 80.656 kb on - strand, within Ac3H11_1501at 80.656 kb on - strand, within Ac3H11_1501at 80.673 kb on - strand, within Ac3H11_1501at 80.688 kb on + strand, within Ac3H11_1501at 80.688 kb on + strand, within Ac3H11_1501at 80.688 kb on + strand, within Ac3H11_1501at 80.688 kb on + strand, within Ac3H11_1501at 80.689 kb on - strand, within Ac3H11_1501at 80.708 kb on + strand, within Ac3H11_1501at 80.708 kb on + strand, within Ac3H11_1501at 80.708 kb on + strand, within Ac3H11_1501at 80.708 kb on + strand, within Ac3H11_1501at 80.708 kb on + strand, within Ac3H11_1501at 80.709 kb on - strand, within Ac3H11_1501at 80.709 kb on - strand, within Ac3H11_1501at 80.709 kb on - strand, within Ac3H11_1501at 80.786 kb on + strand, within Ac3H11_1501at 80.787 kb on - strand, within Ac3H11_1501at 80.787 kb on - strand, within Ac3H11_1501at 80.787 kb on - strand, within Ac3H11_1501at 80.787 kb on - strand, within Ac3H11_1501at 80.787 kb on - strand, within Ac3H11_1501

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
78,750 - Ac3H11_1498 0.87 +0.4
79,079 - Ac3H11_1499 0.27 +0.6
79,079 - Ac3H11_1499 0.27 -0.5
79,079 - Ac3H11_1499 0.27 +1.2
79,342 + Ac3H11_1499 0.60 +0.3
79,343 - Ac3H11_1499 0.60 +0.4
79,343 - Ac3H11_1499 0.60 +0.4
79,343 - Ac3H11_1499 0.60 +0.6
79,343 - Ac3H11_1499 0.60 +0.2
79,360 + Ac3H11_1499 0.62 +0.4
79,360 + Ac3H11_1499 0.62 -0.9
79,361 - Ac3H11_1499 0.62 -0.7
79,372 + Ac3H11_1499 0.64 -0.5
79,372 + Ac3H11_1499 0.64 +0.4
79,372 + Ac3H11_1499 0.64 +0.1
79,373 - Ac3H11_1499 0.64 +0.1
79,373 - Ac3H11_1499 0.64 +1.3
79,373 - Ac3H11_1499 0.64 +0.6
79,390 + Ac3H11_1499 0.66 +0.5
79,390 + Ac3H11_1499 0.66 -0.7
79,450 + Ac3H11_1499 0.73 +0.6
79,450 + Ac3H11_1499 0.73 +1.5
79,451 - Ac3H11_1499 0.74 -0.2
79,453 + Ac3H11_1499 0.74 -0.4
79,453 + Ac3H11_1499 0.74 -0.0
79,474 + Ac3H11_1499 0.76 -0.1
79,474 + Ac3H11_1499 0.76 -1.1
79,474 + Ac3H11_1499 0.76 +0.6
79,474 + Ac3H11_1499 0.76 +0.1
79,474 + Ac3H11_1499 0.76 -0.2
79,475 - Ac3H11_1499 0.77 -1.5
79,475 - Ac3H11_1499 0.77 +0.2
79,475 - Ac3H11_1499 0.77 +0.7
79,475 - Ac3H11_1499 0.77 +0.1
79,636 + -1.1
79,636 + -0.5
79,637 - +0.1
79,709 + +0.4
79,931 + Ac3H11_1500 0.66 -0.3
79,943 + Ac3H11_1500 0.69 +1.0
79,943 + Ac3H11_1500 0.69 +0.0
79,943 + Ac3H11_1500 0.69 +0.4
79,986 + Ac3H11_1500 0.80 +0.2
79,986 + Ac3H11_1500 0.80 -0.8
79,986 + Ac3H11_1500 0.80 +1.0
79,986 + Ac3H11_1500 0.80 +4.0
79,986 + Ac3H11_1500 0.80 -0.4
79,986 + Ac3H11_1500 0.80 -1.9
79,987 - Ac3H11_1500 0.80 +0.8
79,987 - Ac3H11_1500 0.80 +1.0
79,987 - Ac3H11_1500 0.80 -0.7
79,987 - Ac3H11_1500 0.80 -0.2
79,987 - Ac3H11_1500 0.80 +0.7
79,987 - Ac3H11_1500 0.80 -0.5
80,088 + +1.1
80,242 + -1.1
80,242 + -0.6
80,242 + -0.2
80,242 + -0.7
80,242 + -0.6
80,243 - +0.6
80,329 - +0.4
80,655 - Ac3H11_1501 0.35 +0.7
80,656 - Ac3H11_1501 0.35 +0.0
80,656 - Ac3H11_1501 0.35 +0.4
80,656 - Ac3H11_1501 0.35 +0.0
80,673 - Ac3H11_1501 0.37 +0.8
80,688 + Ac3H11_1501 0.38 -0.5
80,688 + Ac3H11_1501 0.38 -0.9
80,688 + Ac3H11_1501 0.38 -1.3
80,688 + Ac3H11_1501 0.38 -0.5
80,689 - Ac3H11_1501 0.38 +1.0
80,708 + Ac3H11_1501 0.40 -0.9
80,708 + Ac3H11_1501 0.40 -0.3
80,708 + Ac3H11_1501 0.40 +0.1
80,708 + Ac3H11_1501 0.40 +0.6
80,708 + Ac3H11_1501 0.40 +0.7
80,709 - Ac3H11_1501 0.40 +0.6
80,709 - Ac3H11_1501 0.40 -0.6
80,709 - Ac3H11_1501 0.40 +0.8
80,786 + Ac3H11_1501 0.49 -0.3
80,787 - Ac3H11_1501 0.49 +0.1
80,787 - Ac3H11_1501 0.49 +1.7
80,787 - Ac3H11_1501 0.49 -0.8
80,787 - Ac3H11_1501 0.49 -0.5
80,787 - Ac3H11_1501 0.49 +0.1

Or see this region's nucleotide sequence