Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_18875

Experiment: copper (II) chloride 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_18860 and AO353_18865 overlap by 1 nucleotidesAO353_18865 and AO353_18870 overlap by 4 nucleotidesAO353_18870 and AO353_18875 are separated by 3 nucleotidesAO353_18875 and AO353_18880 overlap by 4 nucleotidesAO353_18880 and AO353_18885 overlap by 4 nucleotides AO353_18860: AO353_18860 - heme ABC transporter permease, at 4,144,839 to 4,145,591 _18860 AO353_18865: AO353_18865 - heme exporter protein CcmD, at 4,145,591 to 4,145,767 _18865 AO353_18870: AO353_18870 - cytochrome C biogenesis protein CcmE, at 4,145,764 to 4,146,219 _18870 AO353_18875: AO353_18875 - cytochrome C biogenesis protein CcmF, at 4,146,223 to 4,148,211 _18875 AO353_18880: AO353_18880 - thiol:disulfide interchange protein, at 4,148,208 to 4,148,744 _18880 AO353_18885: AO353_18885 - cytochrome C, at 4,148,741 to 4,149,214 _18885 AO353_18890: AO353_18890 - cytochrome C, at 4,149,207 to 4,150,415 _18890 Position (kb) 4146 4147 4148 4149Strain fitness (log2 ratio) -1 0 1at 4148.487 kb on + strand, within AO353_18880

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
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4,148,487 + AO353_18880 0.52 -0.3

Or see this region's nucleotide sequence