Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1992

Experiment: D-Xylose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose (C)
2,500,341	-		BT1990	0.79	-0.3
2,500,454	-				+0.7
2,500,605	-		BT1991	0.27	-0.3
2,500,605	-		BT1991	0.27	+1.2
2,500,704	-				+1.5
2,500,785	-		BT1991	0.68	-2.0
2,500,981	-				+0.5
2,501,004	-				+0.3
2,501,074	-				+0.2
2,501,074	-				-1.1
2,501,142	-				+0.1
2,501,165	+				-1.5
2,501,165	+				-0.3
2,501,166	-				-0.6
2,501,168	-				+1.4
2,501,168	-				+1.7
2,501,230	-				+1.6
2,501,234	-				+1.3
2,501,234	-				+0.2
2,501,236	+				-0.0
2,501,265	-				-0.4
2,501,369	-				-0.5
2,501,382	+				+1.6
2,501,383	-				-1.3
2,501,385	-				+0.9
2,501,400	-				-0.0
2,501,436	-				-1.0
2,501,469	-				+0.5
2,501,472	+				+2.6
2,501,540	+		BT1992	0.10	-1.2
2,501,540	+		BT1992	0.10	+0.6
2,501,541	-		BT1992	0.10	+0.3
2,501,556	-		BT1992	0.11	-0.0
2,501,577	+		BT1992	0.11	-0.3
2,501,577	+		BT1992	0.11	-0.8
2,501,577	+		BT1992	0.11	+0.1
2,501,598	+		BT1992	0.12	+0.6
2,501,647	+		BT1992	0.14	-0.6
2,501,647	+		BT1992	0.14	-0.5
2,501,648	-		BT1992	0.14	+0.9
2,501,651	-		BT1992	0.14	+0.6
2,501,667	+		BT1992	0.14	-0.0
2,501,723	+		BT1992	0.16	-1.2
2,501,723	+		BT1992	0.16	+0.1
2,501,727	+		BT1992	0.16	-1.7
2,501,727	+		BT1992	0.16	+0.7
2,501,728	-		BT1992	0.16	+0.0
2,501,730	-		BT1992	0.16	-0.4
2,501,795	+		BT1992	0.18	+0.0
2,501,796	-		BT1992	0.18	-1.4
2,501,799	+		BT1992	0.18	-0.3
2,501,805	-		BT1992	0.19	+1.5
2,501,805	-		BT1992	0.19	-1.0
2,501,850	+		BT1992	0.20	+0.7
2,501,850	+		BT1992	0.20	+1.9
2,501,850	+		BT1992	0.20	+0.2
2,501,937	-		BT1992	0.23	+0.7
2,501,940	+		BT1992	0.23	-0.4
2,501,940	+		BT1992	0.23	+0.1
2,501,941	-		BT1992	0.23	+0.5
2,501,971	-		BT1992	0.24	-1.1
2,501,974	-		BT1992	0.24	+0.8
2,502,101	+		BT1992	0.28	+0.6
2,502,131	-		BT1992	0.29	+0.1
2,502,153	+		BT1992	0.30	-1.3
2,502,154	-		BT1992	0.30	+0.2
2,502,178	+		BT1992	0.30	-0.8
2,502,178	+		BT1992	0.30	-2.0
2,502,179	-		BT1992	0.31	-2.8
2,502,202	+		BT1992	0.31	+1.1
2,502,246	-		BT1992	0.33	-0.7
2,502,258	+		BT1992	0.33	-1.6
2,502,270	+		BT1992	0.33	-3.0
2,502,271	-		BT1992	0.33	-0.3
2,502,368	+		BT1992	0.37	-0.8
2,502,390	+		BT1992	0.37	-0.6
2,502,477	+		BT1992	0.40	+1.5
2,502,506	+		BT1992	0.41	-1.0
2,502,516	+		BT1992	0.41	-0.3
2,502,516	+		BT1992	0.41	-0.1
2,502,555	+		BT1992	0.43	-0.4
2,502,559	-		BT1992	0.43	+0.3
2,502,624	+		BT1992	0.45	+1.1
2,502,626	+		BT1992	0.45	-2.7
2,502,627	-		BT1992	0.45	-0.1
2,502,627	-		BT1992	0.45	-0.4
2,502,627	-		BT1992	0.45	-0.2
2,502,680	-		BT1992	0.47	+2.3
2,502,693	+		BT1992	0.47	-2.1
2,502,788	-		BT1992	0.50	+1.6
2,502,788	-		BT1992	0.50	+0.7
2,502,810	+		BT1992	0.51	-0.9
2,502,813	-		BT1992	0.51	-0.9
2,502,852	+		BT1992	0.52	+1.7
2,502,871	+		BT1992	0.53	-0.4
2,502,889	-		BT1992	0.53	-1.4
2,502,891	+		BT1992	0.53	-0.7
2,502,963	+		BT1992	0.56	-1.4
2,502,964	-		BT1992	0.56	-0.2
2,502,984	+		BT1992	0.56	-0.8
2,502,985	-		BT1992	0.56	-0.7
2,503,020	+		BT1992	0.57	+1.4
2,503,021	-		BT1992	0.57	+0.3
2,503,021	-		BT1992	0.57	-2.4
2,503,024	-		BT1992	0.58	+0.1
2,503,025	+		BT1992	0.58	-0.2
2,503,086	+		BT1992	0.59	-1.7
2,503,151	+		BT1992	0.62	+0.5
2,503,151	+		BT1992	0.62	-3.2
2,503,151	+		BT1992	0.62	+0.4
2,503,152	-		BT1992	0.62	+0.0
2,503,185	+		BT1992	0.63	-0.4
2,503,205	-		BT1992	0.63	+0.1
2,503,209	-		BT1992	0.63	+0.7
2,503,209	-		BT1992	0.63	+1.7
2,503,209	-		BT1992	0.63	+0.6
2,503,211	-		BT1992	0.63	+1.3
2,503,218	-		BT1992	0.64	+0.7
2,503,221	-		BT1992	0.64	+0.2
2,503,261	-		BT1992	0.65	+1.0
2,503,261	-		BT1992	0.65	-0.8
2,503,270	-		BT1992	0.65	+0.3
2,503,369	-		BT1992	0.69	+0.3
2,503,371	-		BT1992	0.69	+1.9
2,503,394	-		BT1992	0.69	+0.9
2,503,408	+		BT1992	0.70	+0.8
2,503,418	+		BT1992	0.70	+0.1
2,503,431	+		BT1992	0.70	+0.4
2,503,433	+		BT1992	0.71	+1.5
2,503,462	+		BT1992	0.71	+0.6
2,503,462	+		BT1992	0.71	-0.9
2,503,486	-		BT1992	0.72	-1.4
2,503,486	-		BT1992	0.72	+0.3
2,503,529	+		BT1992	0.74	+0.3
2,503,640	-		BT1992	0.77	-1.0
2,503,660	-		BT1992	0.78	+1.9
2,503,691	-		BT1992	0.79	+0.9
2,503,698	+		BT1992	0.79	-0.7
2,503,700	+		BT1992	0.79	+0.9
2,503,700	+		BT1992	0.79	+1.1
2,503,795	-		BT1992	0.82	-0.4
2,503,795	-		BT1992	0.82	+0.1
2,503,983	-		BT1992	0.88	+0.7
2,504,029	-		BT1992	0.90	-1.6
2,504,106	-				-0.1
2,504,203	-				-0.0
2,504,209	-				+0.2
2,504,209	-				+0.6
2,504,218	-				+0.7
2,504,222	-				-0.2
2,504,222	-				+0.4
2,504,222	-				+1.7
2,504,226	-				+0.7
2,504,268	-				-0.1
2,504,325	-				+0.4
2,504,325	-				+1.1
2,504,382	+				+0.4
2,504,382	+				-2.5
2,504,387	+				+0.4
2,504,395	+				-0.6
2,504,446	+				+0.9
2,504,500	-				-0.5
2,504,637	-				+0.5
2,504,648	+				-0.6
2,504,650	+				+2.0
2,504,661	+				+0.5
2,504,661	+				+1.7
2,504,661	+				+0.4
2,504,662	-				-0.7
2,504,662	-				+0.3
2,504,691	-				+2.8
2,504,770	+		BT1993	0.10	-1.3
2,504,770	+		BT1993	0.10	-0.1
2,504,771	-		BT1993	0.10	+1.5
2,504,771	-		BT1993	0.10	-0.6
2,504,807	+		BT1993	0.11	+1.9
2,504,810	-		BT1993	0.11	-2.3
2,504,842	+		BT1993	0.12	+0.9
2,504,845	+		BT1993	0.12	-0.6
2,504,845	+		BT1993	0.12	+0.5
2,504,870	-		BT1993	0.13	+0.3
2,504,920	+		BT1993	0.14	+0.5
2,504,920	+		BT1993	0.14	+0.6
2,504,921	-		BT1993	0.14	-0.8
2,504,962	+		BT1993	0.15	+0.3
2,504,963	-		BT1993	0.15	-0.1
2,504,995	+		BT1993	0.16	-0.9
2,505,087	+		BT1993	0.18	-1.5
2,505,148	-		BT1993	0.20	-0.5
2,505,191	+		BT1993	0.21	-0.4
2,505,213	-		BT1993	0.21	+0.7
2,505,215	-		BT1993	0.21	-0.1
2,505,215	-		BT1993	0.21	-0.2
2,505,217	-		BT1993	0.22	-2.4
2,505,232	-		BT1993	0.22	-1.6
2,505,264	+		BT1993	0.23	+1.3
2,505,274	-		BT1993	0.23	+0.2