Experiment: D-Raffinose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16860 and HMPREF1058_RS16855 are separated by 2 nucleotides HMPREF1058_RS16855 and HMPREF1058_RS16850 are separated by 13 nucleotides HMPREF1058_RS16850 and HMPREF1058_RS16845 are separated by 105 nucleotides
HMPREF1058_RS16860: HMPREF1058_RS16860 - hypothetical protein, at 576,751 to 578,106
_RS16860
HMPREF1058_RS16855: HMPREF1058_RS16855 - LPS export ABC transporter periplasmic protein LptC, at 578,109 to 578,753
_RS16855
HMPREF1058_RS16850: HMPREF1058_RS16850 - HlyC/CorC family transporter, at 578,767 to 580,026
_RS16850
HMPREF1058_RS16845: HMPREF1058_RS16845 - SurA N-terminal domain-containing protein, at 580,132 to 582,264
_RS16845
Position (kb) 578
579
580
581 Strain fitness (log2 ratio) -2
-1
0
1
2 at 577.860 kb on + strand, within HMPREF1058_RS16860 at 577.864 kb on + strand at 577.911 kb on + strand at 577.995 kb on + strand at 578.683 kb on + strand, within HMPREF1058_RS16855 at 578.690 kb on + strand at 578.690 kb on + strand at 578.763 kb on + strand at 578.775 kb on + strand at 578.775 kb on + strand at 578.775 kb on + strand at 578.780 kb on + strand at 578.899 kb on - strand, within HMPREF1058_RS16850 at 578.940 kb on + strand, within HMPREF1058_RS16850 at 578.984 kb on + strand, within HMPREF1058_RS16850 at 579.044 kb on + strand, within HMPREF1058_RS16850 at 579.048 kb on - strand, within HMPREF1058_RS16850 at 579.067 kb on - strand, within HMPREF1058_RS16850 at 579.077 kb on + strand, within HMPREF1058_RS16850 at 579.222 kb on + strand, within HMPREF1058_RS16850 at 579.224 kb on + strand, within HMPREF1058_RS16850 at 579.227 kb on + strand, within HMPREF1058_RS16850 at 579.233 kb on - strand, within HMPREF1058_RS16850 at 579.317 kb on + strand, within HMPREF1058_RS16850 at 579.318 kb on - strand, within HMPREF1058_RS16850 at 579.408 kb on + strand, within HMPREF1058_RS16850 at 579.409 kb on - strand, within HMPREF1058_RS16850 at 579.456 kb on - strand, within HMPREF1058_RS16850 at 579.465 kb on - strand, within HMPREF1058_RS16850 at 579.508 kb on + strand, within HMPREF1058_RS16850 at 579.509 kb on - strand, within HMPREF1058_RS16850 at 579.533 kb on + strand, within HMPREF1058_RS16850 at 579.534 kb on - strand, within HMPREF1058_RS16850 at 579.534 kb on - strand, within HMPREF1058_RS16850 at 579.538 kb on + strand, within HMPREF1058_RS16850 at 579.538 kb on + strand, within HMPREF1058_RS16850 at 579.539 kb on - strand, within HMPREF1058_RS16850 at 579.540 kb on + strand, within HMPREF1058_RS16850 at 579.674 kb on + strand, within HMPREF1058_RS16850 at 579.675 kb on - strand, within HMPREF1058_RS16850 at 579.675 kb on - strand, within HMPREF1058_RS16850 at 579.696 kb on + strand, within HMPREF1058_RS16850 at 579.775 kb on + strand, within HMPREF1058_RS16850 at 579.780 kb on - strand, within HMPREF1058_RS16850 at 579.805 kb on + strand, within HMPREF1058_RS16850 at 579.805 kb on + strand, within HMPREF1058_RS16850 at 579.806 kb on - strand, within HMPREF1058_RS16850 at 579.880 kb on + strand, within HMPREF1058_RS16850 at 580.004 kb on + strand at 580.048 kb on + strand at 580.049 kb on - strand at 580.071 kb on + strand at 580.409 kb on + strand, within HMPREF1058_RS16845 at 580.421 kb on + strand, within HMPREF1058_RS16845 at 580.557 kb on + strand, within HMPREF1058_RS16845 at 580.558 kb on - strand, within HMPREF1058_RS16845 at 580.628 kb on - strand, within HMPREF1058_RS16845 at 580.628 kb on - strand, within HMPREF1058_RS16845 at 580.861 kb on + strand, within HMPREF1058_RS16845 at 580.862 kb on - strand, within HMPREF1058_RS16845 at 580.915 kb on + strand, within HMPREF1058_RS16845 at 580.926 kb on - strand, within HMPREF1058_RS16845 at 580.926 kb on - strand, within HMPREF1058_RS16845
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose 20 mM (C) remove 577,860 + HMPREF1058_RS16860 0.82 -1.0 577,864 + +0.7 577,911 + +1.7 577,995 + -0.3 578,683 + HMPREF1058_RS16855 0.89 -0.6 578,690 + -1.5 578,690 + +0.7 578,763 + -1.9 578,775 + -1.3 578,775 + +1.1 578,775 + -2.3 578,780 + -0.2 578,899 - HMPREF1058_RS16850 0.10 -0.5 578,940 + HMPREF1058_RS16850 0.14 -1.8 578,984 + HMPREF1058_RS16850 0.17 +0.3 579,044 + HMPREF1058_RS16850 0.22 -0.3 579,048 - HMPREF1058_RS16850 0.22 -0.3 579,067 - HMPREF1058_RS16850 0.24 -1.3 579,077 + HMPREF1058_RS16850 0.25 -0.2 579,222 + HMPREF1058_RS16850 0.36 -1.5 579,224 + HMPREF1058_RS16850 0.36 -0.5 579,227 + HMPREF1058_RS16850 0.37 -0.8 579,233 - HMPREF1058_RS16850 0.37 -1.4 579,317 + HMPREF1058_RS16850 0.44 -0.7 579,318 - HMPREF1058_RS16850 0.44 -0.5 579,408 + HMPREF1058_RS16850 0.51 +0.4 579,409 - HMPREF1058_RS16850 0.51 +0.4 579,456 - HMPREF1058_RS16850 0.55 -1.9 579,465 - HMPREF1058_RS16850 0.55 -2.0 579,508 + HMPREF1058_RS16850 0.59 -1.2 579,509 - HMPREF1058_RS16850 0.59 -0.7 579,533 + HMPREF1058_RS16850 0.61 +0.5 579,534 - HMPREF1058_RS16850 0.61 -1.4 579,534 - HMPREF1058_RS16850 0.61 -0.7 579,538 + HMPREF1058_RS16850 0.61 -0.3 579,538 + HMPREF1058_RS16850 0.61 -0.6 579,539 - HMPREF1058_RS16850 0.61 -2.7 579,540 + HMPREF1058_RS16850 0.61 +2.3 579,674 + HMPREF1058_RS16850 0.72 -0.6 579,675 - HMPREF1058_RS16850 0.72 -1.4 579,675 - HMPREF1058_RS16850 0.72 -1.0 579,696 + HMPREF1058_RS16850 0.74 -1.5 579,775 + HMPREF1058_RS16850 0.80 +0.0 579,780 - HMPREF1058_RS16850 0.80 -1.1 579,805 + HMPREF1058_RS16850 0.82 -0.9 579,805 + HMPREF1058_RS16850 0.82 +0.1 579,806 - HMPREF1058_RS16850 0.82 -0.2 579,880 + HMPREF1058_RS16850 0.88 -0.9 580,004 + -0.6 580,048 + +0.7 580,049 - -2.3 580,071 + +0.2 580,409 + HMPREF1058_RS16845 0.13 -1.8 580,421 + HMPREF1058_RS16845 0.14 +0.7 580,557 + HMPREF1058_RS16845 0.20 +0.3 580,558 - HMPREF1058_RS16845 0.20 -0.7 580,628 - HMPREF1058_RS16845 0.23 +0.7 580,628 - HMPREF1058_RS16845 0.23 -1.4 580,861 + HMPREF1058_RS16845 0.34 +0.3 580,862 - HMPREF1058_RS16845 0.34 -0.3 580,915 + HMPREF1058_RS16845 0.37 -0.7 580,926 - HMPREF1058_RS16845 0.37 -1.2 580,926 - HMPREF1058_RS16845 0.37 -2.5
Or see this region's nucleotide sequence