Strain Fitness in Rahnella sp. WP5 around EX31_RS21580

Experiment: Ammonium chloride (N); RCH2 media; no shaking

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS21570 and EX31_RS21575 are separated by 265 nucleotidesEX31_RS21575 and EX31_RS21580 are separated by 162 nucleotidesEX31_RS21580 and EX31_RS21585 overlap by 11 nucleotidesEX31_RS21585 and EX31_RS21590 are separated by 11 nucleotides EX31_RS21570: EX31_RS21570 - hypothetical protein, at 59,713 to 60,033 _RS21570 EX31_RS21575: EX31_RS21575 - hypothetical protein, at 60,299 to 60,700 _RS21575 EX31_RS21580: EX31_RS21580 - sugar ABC transporter permease, at 60,863 to 61,735 _RS21580 EX31_RS21585: EX31_RS21585 - carbohydrate ABC transporter permease, at 61,725 to 62,624 _RS21585 EX31_RS21590: EX31_RS21590 - phosphodiesterase, at 62,636 to 63,463 _RS21590 Position (kb) 60 61 62Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 59.898 kb on + strand, within EX31_RS21570at 59.942 kb on - strand, within EX31_RS21570at 60.100 kb on + strandat 60.116 kb on + strandat 60.190 kb on + strandat 60.282 kb on - strandat 60.370 kb on - strand, within EX31_RS21575at 60.427 kb on + strand, within EX31_RS21575at 60.450 kb on - strand, within EX31_RS21575at 60.497 kb on + strand, within EX31_RS21575at 60.637 kb on + strand, within EX31_RS21575at 60.641 kb on + strand, within EX31_RS21575at 60.673 kb on + strandat 60.675 kb on + strandat 60.676 kb on - strandat 60.676 kb on - strandat 60.746 kb on + strandat 60.771 kb on - strandat 60.830 kb on + strandat 60.831 kb on - strandat 60.831 kb on - strandat 60.839 kb on + strandat 60.861 kb on + strandat 60.922 kb on - strandat 60.922 kb on - strandat 60.929 kb on + strandat 60.929 kb on + strandat 60.929 kb on + strandat 60.929 kb on + strandat 60.929 kb on + strandat 60.929 kb on + strandat 60.930 kb on - strandat 60.930 kb on - strandat 60.930 kb on - strandat 60.932 kb on + strandat 61.073 kb on + strand, within EX31_RS21580at 61.073 kb on + strand, within EX31_RS21580at 61.073 kb on + strand, within EX31_RS21580at 61.073 kb on + strand, within EX31_RS21580at 61.074 kb on - strand, within EX31_RS21580at 61.074 kb on - strand, within EX31_RS21580at 61.074 kb on - strand, within EX31_RS21580at 61.103 kb on - strand, within EX31_RS21580at 61.103 kb on - strand, within EX31_RS21580at 61.259 kb on + strand, within EX31_RS21580at 61.259 kb on + strand, within EX31_RS21580at 61.260 kb on - strand, within EX31_RS21580at 61.289 kb on - strand, within EX31_RS21580at 61.295 kb on + strand, within EX31_RS21580at 61.295 kb on + strand, within EX31_RS21580at 61.295 kb on + strand, within EX31_RS21580at 61.296 kb on - strand, within EX31_RS21580at 61.296 kb on - strand, within EX31_RS21580at 61.364 kb on + strand, within EX31_RS21580at 61.364 kb on + strand, within EX31_RS21580at 61.364 kb on + strand, within EX31_RS21580at 61.364 kb on + strand, within EX31_RS21580at 61.364 kb on + strand, within EX31_RS21580at 61.364 kb on + strand, within EX31_RS21580at 61.364 kb on + strand, within EX31_RS21580at 61.364 kb on + strand, within EX31_RS21580at 61.364 kb on + strand, within EX31_RS21580at 61.365 kb on - strand, within EX31_RS21580at 61.365 kb on - strand, within EX31_RS21580at 61.365 kb on - strand, within EX31_RS21580at 61.365 kb on - strand, within EX31_RS21580at 61.365 kb on - strand, within EX31_RS21580at 61.365 kb on - strand, within EX31_RS21580at 61.365 kb on - strand, within EX31_RS21580at 61.460 kb on + strand, within EX31_RS21580at 61.460 kb on + strand, within EX31_RS21580at 61.460 kb on + strand, within EX31_RS21580at 61.460 kb on + strand, within EX31_RS21580at 61.461 kb on - strand, within EX31_RS21580at 61.461 kb on - strand, within EX31_RS21580at 61.461 kb on - strand, within EX31_RS21580at 61.463 kb on - strand, within EX31_RS21580at 61.463 kb on - strand, within EX31_RS21580at 61.463 kb on - strand, within EX31_RS21580at 61.520 kb on + strand, within EX31_RS21580at 61.520 kb on + strand, within EX31_RS21580at 61.521 kb on - strand, within EX31_RS21580at 61.536 kb on + strand, within EX31_RS21580at 61.536 kb on + strand, within EX31_RS21580at 61.537 kb on - strand, within EX31_RS21580at 61.595 kb on + strand, within EX31_RS21580at 61.595 kb on + strand, within EX31_RS21580at 61.596 kb on - strand, within EX31_RS21580at 61.596 kb on - strand, within EX31_RS21580at 61.596 kb on - strand, within EX31_RS21580at 61.596 kb on - strand, within EX31_RS21580at 61.596 kb on - strand, within EX31_RS21580at 61.598 kb on + strand, within EX31_RS21580at 61.598 kb on + strand, within EX31_RS21580at 61.598 kb on + strand, within EX31_RS21580at 61.598 kb on + strand, within EX31_RS21580at 61.598 kb on + strand, within EX31_RS21580at 61.598 kb on + strand, within EX31_RS21580at 61.598 kb on + strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.632 kb on + strand, within EX31_RS21580at 61.801 kb on + strandat 61.923 kb on - strand, within EX31_RS21585at 62.013 kb on - strand, within EX31_RS21585at 62.086 kb on - strand, within EX31_RS21585at 62.118 kb on + strand, within EX31_RS21585at 62.119 kb on - strand, within EX31_RS21585at 62.156 kb on + strand, within EX31_RS21585at 62.157 kb on - strand, within EX31_RS21585at 62.157 kb on - strand, within EX31_RS21585at 62.204 kb on + strand, within EX31_RS21585at 62.205 kb on - strand, within EX31_RS21585at 62.252 kb on - strand, within EX31_RS21585at 62.252 kb on - strand, within EX31_RS21585at 62.252 kb on - strand, within EX31_RS21585at 62.399 kb on + strand, within EX31_RS21585at 62.399 kb on + strand, within EX31_RS21585at 62.399 kb on + strand, within EX31_RS21585at 62.399 kb on + strand, within EX31_RS21585at 62.399 kb on + strand, within EX31_RS21585at 62.399 kb on + strand, within EX31_RS21585at 62.399 kb on + strand, within EX31_RS21585at 62.399 kb on + strand, within EX31_RS21585at 62.399 kb on + strand, within EX31_RS21585at 62.400 kb on - strand, within EX31_RS21585at 62.400 kb on - strand, within EX31_RS21585at 62.400 kb on - strand, within EX31_RS21585at 62.400 kb on - strand, within EX31_RS21585at 62.400 kb on - strand, within EX31_RS21585at 62.400 kb on - strand, within EX31_RS21585at 62.400 kb on - strand, within EX31_RS21585at 62.403 kb on + strand, within EX31_RS21585at 62.403 kb on + strand, within EX31_RS21585at 62.403 kb on + strand, within EX31_RS21585at 62.419 kb on - strand, within EX31_RS21585at 62.419 kb on - strand, within EX31_RS21585at 62.419 kb on - strand, within EX31_RS21585at 62.419 kb on - strand, within EX31_RS21585at 62.521 kb on + strand, within EX31_RS21585at 62.521 kb on + strand, within EX31_RS21585at 62.521 kb on + strand, within EX31_RS21585at 62.521 kb on + strand, within EX31_RS21585at 62.521 kb on + strand, within EX31_RS21585at 62.521 kb on + strand, within EX31_RS21585at 62.521 kb on + strand, within EX31_RS21585at 62.522 kb on - strand, within EX31_RS21585at 62.522 kb on - strand, within EX31_RS21585at 62.522 kb on - strand, within EX31_RS21585at 62.522 kb on - strand, within EX31_RS21585at 62.525 kb on + strand, within EX31_RS21585at 62.526 kb on - strand, within EX31_RS21585at 62.573 kb on + strandat 62.622 kb on + strandat 62.643 kb on + strandat 62.643 kb on + strandat 62.690 kb on + strandat 62.691 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking
remove
59,898 + EX31_RS21570 0.58 +0.1
59,942 - EX31_RS21570 0.71 -1.1
60,100 + -1.3
60,116 + -2.0
60,190 + +0.4
60,282 - +0.8
60,370 - EX31_RS21575 0.18 -0.1
60,427 + EX31_RS21575 0.32 +0.9
60,450 - EX31_RS21575 0.38 -0.3
60,497 + EX31_RS21575 0.49 +0.5
60,637 + EX31_RS21575 0.84 +1.3
60,641 + EX31_RS21575 0.85 +0.7
60,673 + -0.4
60,675 + -1.1
60,676 - +1.1
60,676 - +1.5
60,746 + +1.2
60,771 - +2.2
60,830 + +0.8
60,831 - +1.1
60,831 - +1.2
60,839 + +2.1
60,861 + -0.9
60,922 - -0.5
60,922 - +0.6
60,929 + +0.9
60,929 + +0.1
60,929 + +0.1
60,929 + -0.3
60,929 + +0.1
60,929 + -1.2
60,930 - +1.5
60,930 - -0.3
60,930 - +0.5
60,932 + +0.1
61,073 + EX31_RS21580 0.24 -0.1
61,073 + EX31_RS21580 0.24 -0.4
61,073 + EX31_RS21580 0.24 +0.5
61,073 + EX31_RS21580 0.24 +1.1
61,074 - EX31_RS21580 0.24 -1.0
61,074 - EX31_RS21580 0.24 +1.9
61,074 - EX31_RS21580 0.24 +1.5
61,103 - EX31_RS21580 0.27 -0.4
61,103 - EX31_RS21580 0.27 +0.0
61,259 + EX31_RS21580 0.45 +0.6
61,259 + EX31_RS21580 0.45 +0.2
61,260 - EX31_RS21580 0.45 +1.4
61,289 - EX31_RS21580 0.49 +0.2
61,295 + EX31_RS21580 0.49 +1.1
61,295 + EX31_RS21580 0.49 -1.2
61,295 + EX31_RS21580 0.49 +0.4
61,296 - EX31_RS21580 0.50 +0.3
61,296 - EX31_RS21580 0.50 +0.6
61,364 + EX31_RS21580 0.57 -1.3
61,364 + EX31_RS21580 0.57 +0.8
61,364 + EX31_RS21580 0.57 +0.3
61,364 + EX31_RS21580 0.57 +0.1
61,364 + EX31_RS21580 0.57 -1.2
61,364 + EX31_RS21580 0.57 +0.4
61,364 + EX31_RS21580 0.57 +0.4
61,364 + EX31_RS21580 0.57 -0.3
61,364 + EX31_RS21580 0.57 +3.0
61,365 - EX31_RS21580 0.58 +0.8
61,365 - EX31_RS21580 0.58 +1.1
61,365 - EX31_RS21580 0.58 -0.6
61,365 - EX31_RS21580 0.58 +0.3
61,365 - EX31_RS21580 0.58 +1.2
61,365 - EX31_RS21580 0.58 +0.1
61,365 - EX31_RS21580 0.58 +1.5
61,460 + EX31_RS21580 0.68 -1.5
61,460 + EX31_RS21580 0.68 +0.3
61,460 + EX31_RS21580 0.68 +0.1
61,460 + EX31_RS21580 0.68 -1.5
61,461 - EX31_RS21580 0.68 -0.6
61,461 - EX31_RS21580 0.68 +0.5
61,461 - EX31_RS21580 0.68 +1.1
61,463 - EX31_RS21580 0.69 +0.1
61,463 - EX31_RS21580 0.69 +0.5
61,463 - EX31_RS21580 0.69 +1.5
61,520 + EX31_RS21580 0.75 -0.5
61,520 + EX31_RS21580 0.75 -0.5
61,521 - EX31_RS21580 0.75 +2.0
61,536 + EX31_RS21580 0.77 +0.4
61,536 + EX31_RS21580 0.77 +1.5
61,537 - EX31_RS21580 0.77 +0.2
61,595 + EX31_RS21580 0.84 +0.9
61,595 + EX31_RS21580 0.84 +0.6
61,596 - EX31_RS21580 0.84 +0.4
61,596 - EX31_RS21580 0.84 -0.7
61,596 - EX31_RS21580 0.84 +0.2
61,596 - EX31_RS21580 0.84 +0.1
61,596 - EX31_RS21580 0.84 +0.7
61,598 + EX31_RS21580 0.84 -1.3
61,598 + EX31_RS21580 0.84 +0.2
61,598 + EX31_RS21580 0.84 +1.1
61,598 + EX31_RS21580 0.84 -1.0
61,598 + EX31_RS21580 0.84 +0.2
61,598 + EX31_RS21580 0.84 +0.5
61,598 + EX31_RS21580 0.84 +3.6
61,599 - EX31_RS21580 0.84 -0.8
61,599 - EX31_RS21580 0.84 -1.3
61,599 - EX31_RS21580 0.84 -1.1
61,599 - EX31_RS21580 0.84 +1.5
61,599 - EX31_RS21580 0.84 +0.2
61,599 - EX31_RS21580 0.84 +0.3
61,599 - EX31_RS21580 0.84 +0.9
61,599 - EX31_RS21580 0.84 +0.1
61,599 - EX31_RS21580 0.84 +0.6
61,599 - EX31_RS21580 0.84 +0.5
61,599 - EX31_RS21580 0.84 +0.6
61,599 - EX31_RS21580 0.84 -1.3
61,599 - EX31_RS21580 0.84 +0.5
61,632 + EX31_RS21580 0.88 +0.8
61,801 + -1.1
61,923 - EX31_RS21585 0.22 -0.6
62,013 - EX31_RS21585 0.32 -0.5
62,086 - EX31_RS21585 0.40 +0.1
62,118 + EX31_RS21585 0.44 +0.1
62,119 - EX31_RS21585 0.44 +3.1
62,156 + EX31_RS21585 0.48 -0.1
62,157 - EX31_RS21585 0.48 +0.3
62,157 - EX31_RS21585 0.48 -1.4
62,204 + EX31_RS21585 0.53 -0.1
62,205 - EX31_RS21585 0.53 -0.2
62,252 - EX31_RS21585 0.59 -0.9
62,252 - EX31_RS21585 0.59 +1.4
62,252 - EX31_RS21585 0.59 -0.5
62,399 + EX31_RS21585 0.75 +0.1
62,399 + EX31_RS21585 0.75 +0.2
62,399 + EX31_RS21585 0.75 -0.6
62,399 + EX31_RS21585 0.75 +0.3
62,399 + EX31_RS21585 0.75 +1.6
62,399 + EX31_RS21585 0.75 -0.4
62,399 + EX31_RS21585 0.75 +0.2
62,399 + EX31_RS21585 0.75 +0.4
62,399 + EX31_RS21585 0.75 +0.8
62,400 - EX31_RS21585 0.75 +0.3
62,400 - EX31_RS21585 0.75 -0.8
62,400 - EX31_RS21585 0.75 +0.6
62,400 - EX31_RS21585 0.75 -0.3
62,400 - EX31_RS21585 0.75 -2.5
62,400 - EX31_RS21585 0.75 +0.7
62,400 - EX31_RS21585 0.75 -0.3
62,403 + EX31_RS21585 0.75 +1.2
62,403 + EX31_RS21585 0.75 -0.9
62,403 + EX31_RS21585 0.75 -0.6
62,419 - EX31_RS21585 0.77 -0.2
62,419 - EX31_RS21585 0.77 -0.2
62,419 - EX31_RS21585 0.77 +0.3
62,419 - EX31_RS21585 0.77 -0.5
62,521 + EX31_RS21585 0.88 -0.1
62,521 + EX31_RS21585 0.88 +0.7
62,521 + EX31_RS21585 0.88 -0.4
62,521 + EX31_RS21585 0.88 -0.5
62,521 + EX31_RS21585 0.88 -1.6
62,521 + EX31_RS21585 0.88 -1.3
62,521 + EX31_RS21585 0.88 +1.8
62,522 - EX31_RS21585 0.89 +0.2
62,522 - EX31_RS21585 0.89 -1.5
62,522 - EX31_RS21585 0.89 -0.3
62,522 - EX31_RS21585 0.89 +0.4
62,525 + EX31_RS21585 0.89 +0.5
62,526 - EX31_RS21585 0.89 -0.2
62,573 + -0.3
62,622 + -0.2
62,643 + +0.2
62,643 + -2.9
62,690 + +0.6
62,691 - +0.5

Or see this region's nucleotide sequence