Strain Fitness in Rahnella sp. WP5 around EX31_RS19740

Experiment: Ammonium chloride (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19730 and EX31_RS19735 overlap by 4 nucleotidesEX31_RS19735 and EX31_RS19740 overlap by 4 nucleotidesEX31_RS19740 and EX31_RS19745 overlap by 4 nucleotides EX31_RS19730: EX31_RS19730 - c-type cytochrome biogenesis protein CcmI, at 579,802 to 581,016 _RS19730 EX31_RS19735: EX31_RS19735 - cytochrome c-type biogenesis protein CcmH, at 581,013 to 581,498 _RS19735 EX31_RS19740: EX31_RS19740 - DsbE family thiol:disulfide interchange protein, at 581,495 to 582,046 _RS19740 EX31_RS19745: EX31_RS19745 - heme lyase CcmF/NrfE family subunit, at 582,043 to 584,016 _RS19745 Position (kb) 581 582 583Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 580.496 kb on - strand, within EX31_RS19730at 580.496 kb on - strand, within EX31_RS19730at 580.496 kb on - strand, within EX31_RS19730at 580.524 kb on + strand, within EX31_RS19730at 580.524 kb on + strand, within EX31_RS19730at 580.525 kb on - strand, within EX31_RS19730at 580.528 kb on - strand, within EX31_RS19730at 580.528 kb on - strand, within EX31_RS19730at 580.568 kb on - strand, within EX31_RS19730at 580.576 kb on + strand, within EX31_RS19730at 580.577 kb on - strand, within EX31_RS19730at 580.577 kb on - strand, within EX31_RS19730at 580.577 kb on - strand, within EX31_RS19730at 580.639 kb on - strand, within EX31_RS19730at 580.639 kb on - strand, within EX31_RS19730at 580.639 kb on - strand, within EX31_RS19730at 580.639 kb on - strand, within EX31_RS19730at 580.639 kb on - strand, within EX31_RS19730at 580.694 kb on + strand, within EX31_RS19730at 580.695 kb on - strand, within EX31_RS19730at 580.695 kb on - strand, within EX31_RS19730at 580.695 kb on - strand, within EX31_RS19730at 580.695 kb on - strand, within EX31_RS19730at 580.792 kb on - strand, within EX31_RS19730at 580.893 kb on - strand, within EX31_RS19730at 580.893 kb on - strand, within EX31_RS19730at 580.893 kb on - strand, within EX31_RS19730at 580.893 kb on - strand, within EX31_RS19730at 580.893 kb on - strand, within EX31_RS19730at 580.925 kb on + strandat 580.925 kb on + strandat 580.926 kb on - strandat 580.926 kb on - strandat 580.926 kb on - strandat 580.926 kb on - strandat 580.926 kb on - strandat 581.039 kb on + strandat 581.039 kb on + strandat 581.040 kb on - strandat 581.040 kb on - strandat 581.040 kb on - strandat 581.040 kb on - strandat 581.180 kb on + strand, within EX31_RS19735at 581.180 kb on + strand, within EX31_RS19735at 581.186 kb on + strand, within EX31_RS19735at 581.186 kb on + strand, within EX31_RS19735at 581.186 kb on + strand, within EX31_RS19735at 581.186 kb on + strand, within EX31_RS19735at 581.187 kb on - strand, within EX31_RS19735at 581.187 kb on - strand, within EX31_RS19735at 581.209 kb on + strand, within EX31_RS19735at 581.209 kb on + strand, within EX31_RS19735at 581.209 kb on + strand, within EX31_RS19735at 581.210 kb on - strand, within EX31_RS19735at 581.210 kb on - strand, within EX31_RS19735at 581.240 kb on + strand, within EX31_RS19735at 581.241 kb on - strand, within EX31_RS19735at 581.241 kb on - strand, within EX31_RS19735at 581.241 kb on - strand, within EX31_RS19735at 581.241 kb on - strand, within EX31_RS19735at 581.241 kb on - strand, within EX31_RS19735at 581.241 kb on - strand, within EX31_RS19735at 581.242 kb on + strand, within EX31_RS19735at 581.242 kb on + strand, within EX31_RS19735at 581.242 kb on + strand, within EX31_RS19735at 581.242 kb on + strand, within EX31_RS19735at 581.242 kb on + strand, within EX31_RS19735at 581.243 kb on - strand, within EX31_RS19735at 581.243 kb on - strand, within EX31_RS19735at 581.243 kb on - strand, within EX31_RS19735at 581.243 kb on - strand, within EX31_RS19735at 581.243 kb on - strand, within EX31_RS19735at 581.243 kb on - strand, within EX31_RS19735at 581.243 kb on - strand, within EX31_RS19735at 581.243 kb on - strand, within EX31_RS19735at 581.243 kb on - strand, within EX31_RS19735at 581.243 kb on - strand, within EX31_RS19735at 581.276 kb on + strand, within EX31_RS19735at 581.276 kb on + strand, within EX31_RS19735at 581.276 kb on + strand, within EX31_RS19735at 581.277 kb on - strand, within EX31_RS19735at 581.336 kb on + strand, within EX31_RS19735at 581.419 kb on + strand, within EX31_RS19735at 581.419 kb on + strand, within EX31_RS19735at 581.419 kb on + strand, within EX31_RS19735at 581.419 kb on + strand, within EX31_RS19735at 581.419 kb on + strand, within EX31_RS19735at 581.419 kb on + strand, within EX31_RS19735at 581.419 kb on + strand, within EX31_RS19735at 581.420 kb on - strand, within EX31_RS19735at 581.420 kb on - strand, within EX31_RS19735at 581.420 kb on - strand, within EX31_RS19735at 581.420 kb on - strand, within EX31_RS19735at 581.420 kb on - strand, within EX31_RS19735at 581.499 kb on - strandat 581.499 kb on - strandat 581.499 kb on - strandat 581.499 kb on - strandat 581.499 kb on - strandat 581.499 kb on - strandat 581.499 kb on - strandat 581.499 kb on - strandat 581.521 kb on - strandat 581.558 kb on + strand, within EX31_RS19740at 581.558 kb on + strand, within EX31_RS19740at 581.559 kb on - strand, within EX31_RS19740at 581.559 kb on - strand, within EX31_RS19740at 581.559 kb on - strand, within EX31_RS19740at 581.559 kb on - strand, within EX31_RS19740at 581.559 kb on - strand, within EX31_RS19740at 581.626 kb on - strand, within EX31_RS19740at 581.639 kb on + strand, within EX31_RS19740at 581.679 kb on + strand, within EX31_RS19740at 581.679 kb on + strand, within EX31_RS19740at 581.679 kb on + strand, within EX31_RS19740at 581.679 kb on + strand, within EX31_RS19740at 581.679 kb on + strand, within EX31_RS19740at 581.679 kb on + strand, within EX31_RS19740at 581.680 kb on - strand, within EX31_RS19740at 581.680 kb on - strand, within EX31_RS19740at 581.680 kb on - strand, within EX31_RS19740at 581.680 kb on - strand, within EX31_RS19740at 581.680 kb on - strand, within EX31_RS19740at 581.733 kb on + strand, within EX31_RS19740at 581.733 kb on + strand, within EX31_RS19740at 581.734 kb on - strand, within EX31_RS19740at 581.734 kb on - strand, within EX31_RS19740at 581.774 kb on - strand, within EX31_RS19740at 581.781 kb on + strand, within EX31_RS19740at 581.781 kb on + strand, within EX31_RS19740at 581.782 kb on - strand, within EX31_RS19740at 581.782 kb on - strand, within EX31_RS19740at 581.782 kb on - strand, within EX31_RS19740at 581.782 kb on - strand, within EX31_RS19740at 581.782 kb on - strand, within EX31_RS19740at 581.782 kb on - strand, within EX31_RS19740at 581.868 kb on + strand, within EX31_RS19740at 581.869 kb on - strand, within EX31_RS19740at 582.025 kb on + strandat 582.038 kb on - strandat 582.114 kb on + strandat 582.115 kb on - strandat 582.115 kb on - strandat 582.115 kb on - strandat 582.115 kb on - strandat 582.139 kb on - strandat 582.179 kb on + strandat 582.180 kb on - strandat 582.180 kb on - strandat 582.180 kb on - strandat 582.183 kb on - strandat 582.183 kb on - strandat 582.233 kb on + strandat 582.234 kb on - strandat 582.234 kb on - strandat 582.297 kb on - strand, within EX31_RS19745at 582.375 kb on - strand, within EX31_RS19745at 582.375 kb on - strand, within EX31_RS19745at 582.419 kb on + strand, within EX31_RS19745at 582.420 kb on - strand, within EX31_RS19745at 582.475 kb on - strand, within EX31_RS19745at 582.477 kb on - strand, within EX31_RS19745at 582.477 kb on - strand, within EX31_RS19745at 582.667 kb on - strand, within EX31_RS19745at 582.667 kb on - strand, within EX31_RS19745at 582.713 kb on - strand, within EX31_RS19745at 582.799 kb on + strand, within EX31_RS19745at 582.800 kb on - strand, within EX31_RS19745at 582.831 kb on + strand, within EX31_RS19745at 582.832 kb on - strand, within EX31_RS19745at 582.832 kb on - strand, within EX31_RS19745at 582.840 kb on + strand, within EX31_RS19745at 582.841 kb on - strand, within EX31_RS19745at 582.867 kb on + strand, within EX31_RS19745at 582.867 kb on + strand, within EX31_RS19745at 582.868 kb on - strand, within EX31_RS19745at 582.868 kb on - strand, within EX31_RS19745at 582.946 kb on + strand, within EX31_RS19745at 582.946 kb on + strand, within EX31_RS19745at 582.947 kb on - strand, within EX31_RS19745at 582.947 kb on - strand, within EX31_RS19745at 582.947 kb on - strand, within EX31_RS19745at 582.947 kb on - strand, within EX31_RS19745at 582.947 kb on - strand, within EX31_RS19745at 582.947 kb on - strand, within EX31_RS19745at 582.947 kb on - strand, within EX31_RS19745at 582.947 kb on - strand, within EX31_RS19745at 582.965 kb on + strand, within EX31_RS19745at 582.965 kb on + strand, within EX31_RS19745at 582.966 kb on - strand, within EX31_RS19745at 582.966 kb on - strand, within EX31_RS19745at 583.015 kb on - strand, within EX31_RS19745at 583.015 kb on - strand, within EX31_RS19745at 583.015 kb on - strand, within EX31_RS19745at 583.015 kb on - strand, within EX31_RS19745at 583.021 kb on - strand, within EX31_RS19745at 583.021 kb on - strand, within EX31_RS19745at 583.028 kb on + strand, within EX31_RS19745

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking
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580,496 - EX31_RS19730 0.57 +0.8
580,496 - EX31_RS19730 0.57 +0.1
580,496 - EX31_RS19730 0.57 +1.9
580,524 + EX31_RS19730 0.59 -0.2
580,524 + EX31_RS19730 0.59 +0.2
580,525 - EX31_RS19730 0.60 +1.2
580,528 - EX31_RS19730 0.60 -0.4
580,528 - EX31_RS19730 0.60 -0.5
580,568 - EX31_RS19730 0.63 +0.2
580,576 + EX31_RS19730 0.64 -1.0
580,577 - EX31_RS19730 0.64 -0.5
580,577 - EX31_RS19730 0.64 -0.6
580,577 - EX31_RS19730 0.64 +0.1
580,639 - EX31_RS19730 0.69 -1.1
580,639 - EX31_RS19730 0.69 +0.3
580,639 - EX31_RS19730 0.69 +0.1
580,639 - EX31_RS19730 0.69 +0.5
580,639 - EX31_RS19730 0.69 +0.1
580,694 + EX31_RS19730 0.73 +4.1
580,695 - EX31_RS19730 0.73 +0.0
580,695 - EX31_RS19730 0.73 -0.2
580,695 - EX31_RS19730 0.73 -0.2
580,695 - EX31_RS19730 0.73 +0.1
580,792 - EX31_RS19730 0.81 -1.2
580,893 - EX31_RS19730 0.90 -0.0
580,893 - EX31_RS19730 0.90 +1.1
580,893 - EX31_RS19730 0.90 +0.8
580,893 - EX31_RS19730 0.90 +0.5
580,893 - EX31_RS19730 0.90 +0.3
580,925 + +0.1
580,925 + -0.7
580,926 - +0.1
580,926 - +0.7
580,926 - -0.2
580,926 - -0.2
580,926 - +0.9
581,039 + +0.5
581,039 + +0.1
581,040 - -0.8
581,040 - +1.6
581,040 - +0.0
581,040 - -0.8
581,180 + EX31_RS19735 0.34 -1.1
581,180 + EX31_RS19735 0.34 -1.2
581,186 + EX31_RS19735 0.36 -0.6
581,186 + EX31_RS19735 0.36 +0.9
581,186 + EX31_RS19735 0.36 +0.6
581,186 + EX31_RS19735 0.36 +1.5
581,187 - EX31_RS19735 0.36 +0.5
581,187 - EX31_RS19735 0.36 +0.7
581,209 + EX31_RS19735 0.40 +0.7
581,209 + EX31_RS19735 0.40 -2.3
581,209 + EX31_RS19735 0.40 +0.7
581,210 - EX31_RS19735 0.41 +0.6
581,210 - EX31_RS19735 0.41 -0.3
581,240 + EX31_RS19735 0.47 +1.0
581,241 - EX31_RS19735 0.47 +0.7
581,241 - EX31_RS19735 0.47 -0.6
581,241 - EX31_RS19735 0.47 +0.1
581,241 - EX31_RS19735 0.47 +2.3
581,241 - EX31_RS19735 0.47 -1.2
581,241 - EX31_RS19735 0.47 +0.1
581,242 + EX31_RS19735 0.47 +1.2
581,242 + EX31_RS19735 0.47 +0.1
581,242 + EX31_RS19735 0.47 +0.1
581,242 + EX31_RS19735 0.47 -0.4
581,242 + EX31_RS19735 0.47 -1.4
581,243 - EX31_RS19735 0.47 -0.8
581,243 - EX31_RS19735 0.47 -0.3
581,243 - EX31_RS19735 0.47 -0.6
581,243 - EX31_RS19735 0.47 +0.4
581,243 - EX31_RS19735 0.47 -0.8
581,243 - EX31_RS19735 0.47 +0.5
581,243 - EX31_RS19735 0.47 -0.1
581,243 - EX31_RS19735 0.47 -0.1
581,243 - EX31_RS19735 0.47 -2.6
581,243 - EX31_RS19735 0.47 -0.7
581,276 + EX31_RS19735 0.54 -0.9
581,276 + EX31_RS19735 0.54 +0.6
581,276 + EX31_RS19735 0.54 -0.6
581,277 - EX31_RS19735 0.54 +0.5
581,336 + EX31_RS19735 0.66 -1.0
581,419 + EX31_RS19735 0.84 -0.1
581,419 + EX31_RS19735 0.84 +0.4
581,419 + EX31_RS19735 0.84 -0.4
581,419 + EX31_RS19735 0.84 -1.2
581,419 + EX31_RS19735 0.84 -2.3
581,419 + EX31_RS19735 0.84 -0.1
581,419 + EX31_RS19735 0.84 +0.6
581,420 - EX31_RS19735 0.84 -0.3
581,420 - EX31_RS19735 0.84 -0.5
581,420 - EX31_RS19735 0.84 +1.3
581,420 - EX31_RS19735 0.84 +1.2
581,420 - EX31_RS19735 0.84 +1.2
581,499 - +0.4
581,499 - +0.2
581,499 - -2.3
581,499 - +0.0
581,499 - +0.6
581,499 - +1.2
581,499 - -0.4
581,499 - +0.1
581,521 - -0.6
581,558 + EX31_RS19740 0.11 +2.1
581,558 + EX31_RS19740 0.11 -1.2
581,559 - EX31_RS19740 0.12 -0.1
581,559 - EX31_RS19740 0.12 +1.1
581,559 - EX31_RS19740 0.12 +0.7
581,559 - EX31_RS19740 0.12 -0.8
581,559 - EX31_RS19740 0.12 +0.1
581,626 - EX31_RS19740 0.24 +1.1
581,639 + EX31_RS19740 0.26 +0.3
581,679 + EX31_RS19740 0.33 -1.4
581,679 + EX31_RS19740 0.33 +0.1
581,679 + EX31_RS19740 0.33 +0.4
581,679 + EX31_RS19740 0.33 +0.2
581,679 + EX31_RS19740 0.33 +1.0
581,679 + EX31_RS19740 0.33 -0.3
581,680 - EX31_RS19740 0.34 +0.2
581,680 - EX31_RS19740 0.34 +0.4
581,680 - EX31_RS19740 0.34 +0.3
581,680 - EX31_RS19740 0.34 -0.1
581,680 - EX31_RS19740 0.34 -0.6
581,733 + EX31_RS19740 0.43 +0.3
581,733 + EX31_RS19740 0.43 +1.9
581,734 - EX31_RS19740 0.43 -1.2
581,734 - EX31_RS19740 0.43 -0.8
581,774 - EX31_RS19740 0.51 -0.4
581,781 + EX31_RS19740 0.52 +0.7
581,781 + EX31_RS19740 0.52 -0.2
581,782 - EX31_RS19740 0.52 +0.0
581,782 - EX31_RS19740 0.52 -1.2
581,782 - EX31_RS19740 0.52 +0.6
581,782 - EX31_RS19740 0.52 +0.3
581,782 - EX31_RS19740 0.52 -0.1
581,782 - EX31_RS19740 0.52 +1.1
581,868 + EX31_RS19740 0.68 +0.8
581,869 - EX31_RS19740 0.68 -1.5
582,025 + -1.2
582,038 - -1.1
582,114 + -0.8
582,115 - -0.1
582,115 - -1.1
582,115 - -1.2
582,115 - -0.0
582,139 - +1.1
582,179 + +0.3
582,180 - -0.6
582,180 - -1.2
582,180 - -0.4
582,183 - +0.3
582,183 - +0.4
582,233 + -0.4
582,234 - -2.0
582,234 - +1.0
582,297 - EX31_RS19745 0.13 -0.4
582,375 - EX31_RS19745 0.17 +0.5
582,375 - EX31_RS19745 0.17 -1.6
582,419 + EX31_RS19745 0.19 +0.1
582,420 - EX31_RS19745 0.19 +0.7
582,475 - EX31_RS19745 0.22 -0.3
582,477 - EX31_RS19745 0.22 +1.1
582,477 - EX31_RS19745 0.22 -0.1
582,667 - EX31_RS19745 0.32 +1.3
582,667 - EX31_RS19745 0.32 -1.1
582,713 - EX31_RS19745 0.34 +0.8
582,799 + EX31_RS19745 0.38 -0.9
582,800 - EX31_RS19745 0.38 -0.9
582,831 + EX31_RS19745 0.40 +1.1
582,832 - EX31_RS19745 0.40 +0.0
582,832 - EX31_RS19745 0.40 -0.9
582,840 + EX31_RS19745 0.40 +1.1
582,841 - EX31_RS19745 0.40 -1.2
582,867 + EX31_RS19745 0.42 +0.3
582,867 + EX31_RS19745 0.42 +1.7
582,868 - EX31_RS19745 0.42 +1.0
582,868 - EX31_RS19745 0.42 +0.5
582,946 + EX31_RS19745 0.46 -1.2
582,946 + EX31_RS19745 0.46 +0.4
582,947 - EX31_RS19745 0.46 -0.3
582,947 - EX31_RS19745 0.46 +0.0
582,947 - EX31_RS19745 0.46 -1.3
582,947 - EX31_RS19745 0.46 -0.2
582,947 - EX31_RS19745 0.46 +1.3
582,947 - EX31_RS19745 0.46 +1.0
582,947 - EX31_RS19745 0.46 -0.3
582,947 - EX31_RS19745 0.46 -0.7
582,965 + EX31_RS19745 0.47 +0.9
582,965 + EX31_RS19745 0.47 -1.1
582,966 - EX31_RS19745 0.47 -0.4
582,966 - EX31_RS19745 0.47 -0.2
583,015 - EX31_RS19745 0.49 +2.1
583,015 - EX31_RS19745 0.49 +0.5
583,015 - EX31_RS19745 0.49 -0.3
583,015 - EX31_RS19745 0.49 +1.3
583,021 - EX31_RS19745 0.50 +0.1
583,021 - EX31_RS19745 0.50 -0.2
583,028 + EX31_RS19745 0.50 +1.0

Or see this region's nucleotide sequence