Experiment: Ammonium chloride (N); RCH2 media; no shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18870 and EX31_RS18875 are separated by 213 nucleotides EX31_RS18875 and EX31_RS18880 are separated by 26 nucleotides EX31_RS18880 and EX31_RS18885 overlap by 8 nucleotides EX31_RS18885 and EX31_RS18890 are separated by 81 nucleotides
EX31_RS18870: EX31_RS18870 - heavy metal response regulator transcription factor, at 361,250 to 361,924
_RS18870
EX31_RS18875: EX31_RS18875 - hypothetical protein, at 362,138 to 362,761
_RS18875
EX31_RS18880: EX31_RS18880 - thioredoxin reductase, at 362,788 to 363,429
_RS18880
EX31_RS18885: EX31_RS18885 - molybdopterin-dependent oxidoreductase, at 363,422 to 364,186
_RS18885
EX31_RS18890: EX31_RS18890 - outer membrane protein OmpX, at 364,268 to 364,801
_RS18890
Position (kb) 362
363
364 Strain fitness (log2 ratio) -2
-1
0
1
2 at 361.845 kb on - strand, within EX31_RS18870 at 361.845 kb on - strand, within EX31_RS18870 at 361.845 kb on - strand, within EX31_RS18870 at 361.881 kb on + strand at 361.916 kb on + strand at 361.917 kb on - strand at 361.956 kb on + strand at 361.956 kb on + strand at 361.957 kb on - strand at 361.957 kb on - strand at 362.069 kb on - strand at 362.100 kb on - strand at 362.170 kb on - strand at 362.311 kb on + strand, within EX31_RS18875 at 362.311 kb on + strand, within EX31_RS18875 at 362.311 kb on + strand, within EX31_RS18875 at 362.312 kb on - strand, within EX31_RS18875 at 362.442 kb on + strand, within EX31_RS18875 at 362.442 kb on + strand, within EX31_RS18875 at 362.443 kb on - strand, within EX31_RS18875 at 362.513 kb on - strand, within EX31_RS18875 at 362.513 kb on - strand, within EX31_RS18875 at 362.616 kb on + strand, within EX31_RS18875 at 362.669 kb on - strand, within EX31_RS18875 at 362.688 kb on + strand, within EX31_RS18875 at 362.722 kb on + strand at 362.723 kb on - strand at 362.723 kb on - strand at 362.759 kb on + strand at 362.760 kb on - strand at 362.760 kb on - strand at 362.783 kb on + strand at 362.905 kb on + strand, within EX31_RS18880 at 362.905 kb on + strand, within EX31_RS18880 at 362.906 kb on - strand, within EX31_RS18880 at 362.906 kb on - strand, within EX31_RS18880 at 362.906 kb on - strand, within EX31_RS18880 at 362.977 kb on - strand, within EX31_RS18880 at 363.028 kb on + strand, within EX31_RS18880 at 363.028 kb on + strand, within EX31_RS18880 at 363.029 kb on - strand, within EX31_RS18880 at 363.029 kb on - strand, within EX31_RS18880 at 363.029 kb on - strand, within EX31_RS18880 at 363.151 kb on + strand, within EX31_RS18880 at 363.175 kb on + strand, within EX31_RS18880 at 363.175 kb on + strand, within EX31_RS18880 at 363.175 kb on + strand, within EX31_RS18880 at 363.175 kb on + strand, within EX31_RS18880 at 363.175 kb on + strand, within EX31_RS18880 at 363.176 kb on - strand, within EX31_RS18880 at 363.176 kb on - strand, within EX31_RS18880 at 363.176 kb on - strand, within EX31_RS18880 at 363.176 kb on - strand, within EX31_RS18880 at 363.290 kb on - strand, within EX31_RS18880 at 363.333 kb on + strand, within EX31_RS18880 at 363.341 kb on + strand, within EX31_RS18880 at 363.342 kb on - strand, within EX31_RS18880 at 363.487 kb on + strand at 363.505 kb on - strand, within EX31_RS18885 at 363.554 kb on - strand, within EX31_RS18885 at 363.701 kb on + strand, within EX31_RS18885 at 363.714 kb on - strand, within EX31_RS18885 at 363.744 kb on - strand, within EX31_RS18885 at 363.840 kb on + strand, within EX31_RS18885 at 363.932 kb on + strand, within EX31_RS18885 at 363.932 kb on + strand, within EX31_RS18885 at 363.932 kb on + strand, within EX31_RS18885 at 363.932 kb on + strand, within EX31_RS18885 at 363.933 kb on - strand, within EX31_RS18885 at 363.933 kb on - strand, within EX31_RS18885 at 363.933 kb on - strand, within EX31_RS18885 at 363.933 kb on - strand, within EX31_RS18885 at 363.959 kb on + strand, within EX31_RS18885 at 363.963 kb on - strand, within EX31_RS18885 at 363.963 kb on - strand, within EX31_RS18885 at 363.971 kb on - strand, within EX31_RS18885 at 364.091 kb on - strand, within EX31_RS18885 at 364.163 kb on + strand at 364.163 kb on + strand at 364.163 kb on + strand at 364.164 kb on - strand at 364.164 kb on - strand at 364.165 kb on + strand at 364.165 kb on + strand at 364.165 kb on + strand at 364.165 kb on + strand at 364.165 kb on + strand at 364.165 kb on + strand at 364.166 kb on - strand at 364.166 kb on - strand at 364.194 kb on - strand at 364.252 kb on - strand at 364.270 kb on - strand at 364.270 kb on - strand at 364.270 kb on - strand at 364.336 kb on - strand, within EX31_RS18890 at 364.336 kb on - strand, within EX31_RS18890 at 364.336 kb on - strand, within EX31_RS18890 at 364.402 kb on - strand, within EX31_RS18890 at 364.402 kb on - strand, within EX31_RS18890
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking remove 361,845 - EX31_RS18870 0.88 -0.1 361,845 - EX31_RS18870 0.88 +0.3 361,845 - EX31_RS18870 0.88 +0.9 361,881 + -0.1 361,916 + +0.7 361,917 - -0.9 361,956 + +0.5 361,956 + +0.1 361,957 - -1.1 361,957 - +0.5 362,069 - -0.9 362,100 - -0.5 362,170 - +0.7 362,311 + EX31_RS18875 0.28 +0.4 362,311 + EX31_RS18875 0.28 +1.2 362,311 + EX31_RS18875 0.28 +0.3 362,312 - EX31_RS18875 0.28 +0.5 362,442 + EX31_RS18875 0.49 +0.2 362,442 + EX31_RS18875 0.49 -2.2 362,443 - EX31_RS18875 0.49 +0.6 362,513 - EX31_RS18875 0.60 +0.1 362,513 - EX31_RS18875 0.60 +0.5 362,616 + EX31_RS18875 0.77 +0.4 362,669 - EX31_RS18875 0.85 -0.0 362,688 + EX31_RS18875 0.88 +0.6 362,722 + -2.2 362,723 - -0.9 362,723 - -0.1 362,759 + +0.7 362,760 - +1.4 362,760 - +0.4 362,783 + +0.6 362,905 + EX31_RS18880 0.18 +0.1 362,905 + EX31_RS18880 0.18 -0.9 362,906 - EX31_RS18880 0.18 +0.5 362,906 - EX31_RS18880 0.18 +1.1 362,906 - EX31_RS18880 0.18 +0.6 362,977 - EX31_RS18880 0.29 +0.3 363,028 + EX31_RS18880 0.37 -0.2 363,028 + EX31_RS18880 0.37 +0.7 363,029 - EX31_RS18880 0.38 +2.1 363,029 - EX31_RS18880 0.38 -2.3 363,029 - EX31_RS18880 0.38 -0.5 363,151 + EX31_RS18880 0.57 -0.9 363,175 + EX31_RS18880 0.60 -1.8 363,175 + EX31_RS18880 0.60 -0.6 363,175 + EX31_RS18880 0.60 -0.6 363,175 + EX31_RS18880 0.60 -0.6 363,175 + EX31_RS18880 0.60 +1.4 363,176 - EX31_RS18880 0.60 -0.3 363,176 - EX31_RS18880 0.60 +0.9 363,176 - EX31_RS18880 0.60 -0.1 363,176 - EX31_RS18880 0.60 +1.7 363,290 - EX31_RS18880 0.78 -1.4 363,333 + EX31_RS18880 0.85 +0.7 363,341 + EX31_RS18880 0.86 +0.2 363,342 - EX31_RS18880 0.86 +1.7 363,487 + +0.5 363,505 - EX31_RS18885 0.11 -0.9 363,554 - EX31_RS18885 0.17 +1.5 363,701 + EX31_RS18885 0.36 +0.2 363,714 - EX31_RS18885 0.38 -0.9 363,744 - EX31_RS18885 0.42 +0.9 363,840 + EX31_RS18885 0.55 +1.6 363,932 + EX31_RS18885 0.67 +1.2 363,932 + EX31_RS18885 0.67 -0.7 363,932 + EX31_RS18885 0.67 +0.7 363,932 + EX31_RS18885 0.67 +1.1 363,933 - EX31_RS18885 0.67 +0.1 363,933 - EX31_RS18885 0.67 +1.1 363,933 - EX31_RS18885 0.67 +1.8 363,933 - EX31_RS18885 0.67 +2.1 363,959 + EX31_RS18885 0.70 -0.5 363,963 - EX31_RS18885 0.71 -0.9 363,963 - EX31_RS18885 0.71 +0.6 363,971 - EX31_RS18885 0.72 +1.3 364,091 - EX31_RS18885 0.87 +0.1 364,163 + -0.6 364,163 + -0.3 364,163 + +0.1 364,164 - +0.6 364,164 - -1.2 364,165 + +0.9 364,165 + -0.6 364,165 + +0.1 364,165 + +0.1 364,165 + -0.0 364,165 + -1.5 364,166 - +0.1 364,166 - -0.1 364,194 - -0.7 364,252 - +0.4 364,270 - -0.7 364,270 - -0.5 364,270 - -0.9 364,336 - EX31_RS18890 0.13 -0.2 364,336 - EX31_RS18890 0.13 +0.1 364,336 - EX31_RS18890 0.13 +0.7 364,402 - EX31_RS18890 0.25 +0.9 364,402 - EX31_RS18890 0.25 -1.2
Or see this region's nucleotide sequence