Strain Fitness in Rahnella sp. WP5 around EX31_RS18305

Experiment: Ammonium chloride (N); RCH2 media; no shaking

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS18300 and EX31_RS18305 are separated by 121 nucleotidesEX31_RS18305 and EX31_RS18310 are separated by 9 nucleotides EX31_RS18300: EX31_RS18300 - phage tail sheath protein, at 234,550 to 235,737 _RS18300 EX31_RS18305: EX31_RS18305 - tail fiber assembly protein, at 235,859 to 236,314 _RS18305 EX31_RS18310: EX31_RS18310 - tail fiber protein, at 236,324 to 238,723 _RS18310 Position (kb) 235 236 237Strain fitness (log2 ratio) -2 -1 0 1 2at 234.870 kb on - strand, within EX31_RS18300at 234.870 kb on - strand, within EX31_RS18300at 234.941 kb on - strand, within EX31_RS18300at 235.085 kb on - strand, within EX31_RS18300at 235.102 kb on + strand, within EX31_RS18300at 235.161 kb on + strand, within EX31_RS18300at 235.176 kb on + strand, within EX31_RS18300at 235.177 kb on - strand, within EX31_RS18300at 235.177 kb on - strand, within EX31_RS18300at 235.211 kb on + strand, within EX31_RS18300at 235.212 kb on - strand, within EX31_RS18300at 235.212 kb on - strand, within EX31_RS18300at 235.215 kb on + strand, within EX31_RS18300at 235.215 kb on + strand, within EX31_RS18300at 235.215 kb on + strand, within EX31_RS18300at 235.216 kb on - strand, within EX31_RS18300at 235.216 kb on - strand, within EX31_RS18300at 235.216 kb on - strand, within EX31_RS18300at 235.254 kb on + strand, within EX31_RS18300at 235.255 kb on - strand, within EX31_RS18300at 235.256 kb on + strand, within EX31_RS18300at 235.256 kb on + strand, within EX31_RS18300at 235.256 kb on + strand, within EX31_RS18300at 235.256 kb on + strand, within EX31_RS18300at 235.257 kb on - strand, within EX31_RS18300at 235.257 kb on - strand, within EX31_RS18300at 235.257 kb on - strand, within EX31_RS18300at 235.392 kb on + strand, within EX31_RS18300at 235.393 kb on - strand, within EX31_RS18300at 235.393 kb on - strand, within EX31_RS18300at 235.394 kb on + strand, within EX31_RS18300at 235.394 kb on + strand, within EX31_RS18300at 235.394 kb on + strand, within EX31_RS18300at 235.394 kb on + strand, within EX31_RS18300at 235.394 kb on + strand, within EX31_RS18300at 235.394 kb on + strand, within EX31_RS18300at 235.395 kb on - strand, within EX31_RS18300at 235.395 kb on - strand, within EX31_RS18300at 235.395 kb on - strand, within EX31_RS18300at 235.395 kb on - strand, within EX31_RS18300at 235.395 kb on - strand, within EX31_RS18300at 235.398 kb on + strand, within EX31_RS18300at 235.425 kb on + strand, within EX31_RS18300at 235.429 kb on - strand, within EX31_RS18300at 235.429 kb on - strand, within EX31_RS18300at 235.429 kb on - strand, within EX31_RS18300at 235.587 kb on + strand, within EX31_RS18300at 235.587 kb on + strand, within EX31_RS18300at 235.588 kb on - strand, within EX31_RS18300at 235.588 kb on - strand, within EX31_RS18300at 235.591 kb on + strand, within EX31_RS18300at 235.592 kb on - strand, within EX31_RS18300at 235.592 kb on - strand, within EX31_RS18300at 235.677 kb on + strandat 235.758 kb on - strandat 235.766 kb on + strandat 235.766 kb on + strandat 235.779 kb on + strandat 235.823 kb on - strandat 235.860 kb on + strandat 235.861 kb on - strandat 235.901 kb on + strandat 235.902 kb on - strandat 235.902 kb on - strandat 236.064 kb on - strand, within EX31_RS18305at 236.064 kb on - strand, within EX31_RS18305at 236.224 kb on - strand, within EX31_RS18305at 236.224 kb on - strand, within EX31_RS18305at 236.248 kb on - strand, within EX31_RS18305at 236.257 kb on + strand, within EX31_RS18305at 236.271 kb on + strandat 236.277 kb on + strandat 236.277 kb on + strandat 236.278 kb on - strandat 236.301 kb on + strandat 236.302 kb on - strandat 236.304 kb on + strandat 236.304 kb on + strandat 236.304 kb on + strandat 236.304 kb on + strandat 236.304 kb on + strandat 236.304 kb on + strandat 236.305 kb on - strandat 236.305 kb on - strandat 236.305 kb on - strandat 236.325 kb on + strandat 236.495 kb on + strandat 236.542 kb on + strandat 236.543 kb on - strandat 236.543 kb on - strandat 236.650 kb on - strand, within EX31_RS18310at 236.650 kb on - strand, within EX31_RS18310at 236.674 kb on + strand, within EX31_RS18310at 236.686 kb on + strand, within EX31_RS18310at 236.707 kb on + strand, within EX31_RS18310at 236.708 kb on - strand, within EX31_RS18310at 236.791 kb on + strand, within EX31_RS18310at 236.792 kb on - strand, within EX31_RS18310at 236.834 kb on + strand, within EX31_RS18310at 236.834 kb on + strand, within EX31_RS18310at 236.835 kb on - strand, within EX31_RS18310at 236.835 kb on - strand, within EX31_RS18310at 236.838 kb on + strand, within EX31_RS18310at 236.838 kb on + strand, within EX31_RS18310at 236.838 kb on + strand, within EX31_RS18310at 236.838 kb on + strand, within EX31_RS18310at 236.838 kb on + strand, within EX31_RS18310at 236.838 kb on + strand, within EX31_RS18310at 236.838 kb on + strand, within EX31_RS18310at 236.838 kb on + strand, within EX31_RS18310at 236.839 kb on - strand, within EX31_RS18310at 236.839 kb on - strand, within EX31_RS18310at 236.839 kb on - strand, within EX31_RS18310at 236.839 kb on - strand, within EX31_RS18310at 236.839 kb on - strand, within EX31_RS18310at 236.839 kb on - strand, within EX31_RS18310at 236.839 kb on - strand, within EX31_RS18310at 236.839 kb on - strand, within EX31_RS18310at 236.903 kb on - strand, within EX31_RS18310at 236.962 kb on + strand, within EX31_RS18310at 236.972 kb on - strand, within EX31_RS18310at 237.071 kb on - strand, within EX31_RS18310at 237.076 kb on + strand, within EX31_RS18310at 237.077 kb on - strand, within EX31_RS18310at 237.079 kb on + strand, within EX31_RS18310at 237.079 kb on + strand, within EX31_RS18310at 237.079 kb on + strand, within EX31_RS18310at 237.080 kb on - strand, within EX31_RS18310at 237.090 kb on + strand, within EX31_RS18310at 237.091 kb on - strand, within EX31_RS18310at 237.091 kb on - strand, within EX31_RS18310at 237.091 kb on - strand, within EX31_RS18310at 237.092 kb on + strand, within EX31_RS18310at 237.092 kb on + strand, within EX31_RS18310at 237.092 kb on + strand, within EX31_RS18310at 237.092 kb on + strand, within EX31_RS18310at 237.169 kb on + strand, within EX31_RS18310at 237.288 kb on + strand, within EX31_RS18310at 237.288 kb on + strand, within EX31_RS18310at 237.288 kb on + strand, within EX31_RS18310at 237.288 kb on + strand, within EX31_RS18310at 237.289 kb on - strand, within EX31_RS18310at 237.289 kb on - strand, within EX31_RS18310at 237.289 kb on - strand, within EX31_RS18310

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking
remove
234,870 - EX31_RS18300 0.27 -1.7
234,870 - EX31_RS18300 0.27 -0.3
234,941 - EX31_RS18300 0.33 +0.2
235,085 - EX31_RS18300 0.45 -0.1
235,102 + EX31_RS18300 0.46 -0.4
235,161 + EX31_RS18300 0.51 +1.5
235,176 + EX31_RS18300 0.53 +0.1
235,177 - EX31_RS18300 0.53 +0.0
235,177 - EX31_RS18300 0.53 -0.3
235,211 + EX31_RS18300 0.56 +2.0
235,212 - EX31_RS18300 0.56 +0.7
235,212 - EX31_RS18300 0.56 -0.9
235,215 + EX31_RS18300 0.56 +0.6
235,215 + EX31_RS18300 0.56 -0.5
235,215 + EX31_RS18300 0.56 +0.8
235,216 - EX31_RS18300 0.56 +0.4
235,216 - EX31_RS18300 0.56 +0.4
235,216 - EX31_RS18300 0.56 +0.4
235,254 + EX31_RS18300 0.59 +0.8
235,255 - EX31_RS18300 0.59 +1.4
235,256 + EX31_RS18300 0.59 -1.9
235,256 + EX31_RS18300 0.59 -1.3
235,256 + EX31_RS18300 0.59 +1.4
235,256 + EX31_RS18300 0.59 +0.5
235,257 - EX31_RS18300 0.60 +0.1
235,257 - EX31_RS18300 0.60 +2.0
235,257 - EX31_RS18300 0.60 -1.8
235,392 + EX31_RS18300 0.71 -1.1
235,393 - EX31_RS18300 0.71 +1.4
235,393 - EX31_RS18300 0.71 -1.5
235,394 + EX31_RS18300 0.71 +0.3
235,394 + EX31_RS18300 0.71 +1.4
235,394 + EX31_RS18300 0.71 +1.8
235,394 + EX31_RS18300 0.71 +1.7
235,394 + EX31_RS18300 0.71 -0.9
235,394 + EX31_RS18300 0.71 +1.1
235,395 - EX31_RS18300 0.71 -0.4
235,395 - EX31_RS18300 0.71 -0.5
235,395 - EX31_RS18300 0.71 -0.1
235,395 - EX31_RS18300 0.71 +0.8
235,395 - EX31_RS18300 0.71 +1.0
235,398 + EX31_RS18300 0.71 -1.8
235,425 + EX31_RS18300 0.74 -1.0
235,429 - EX31_RS18300 0.74 -1.9
235,429 - EX31_RS18300 0.74 -0.6
235,429 - EX31_RS18300 0.74 -0.8
235,587 + EX31_RS18300 0.87 +0.0
235,587 + EX31_RS18300 0.87 +1.1
235,588 - EX31_RS18300 0.87 +1.0
235,588 - EX31_RS18300 0.87 -0.1
235,591 + EX31_RS18300 0.88 -0.3
235,592 - EX31_RS18300 0.88 +1.4
235,592 - EX31_RS18300 0.88 +0.0
235,677 + -0.1
235,758 - -2.7
235,766 + +0.9
235,766 + +1.8
235,779 + +0.4
235,823 - +0.4
235,860 + +0.4
235,861 - -0.4
235,901 + -1.3
235,902 - +1.4
235,902 - -0.2
236,064 - EX31_RS18305 0.45 +0.4
236,064 - EX31_RS18305 0.45 -0.8
236,224 - EX31_RS18305 0.80 -1.8
236,224 - EX31_RS18305 0.80 -2.2
236,248 - EX31_RS18305 0.85 -1.2
236,257 + EX31_RS18305 0.87 -0.1
236,271 + -0.9
236,277 + -2.2
236,277 + -1.7
236,278 - -0.7
236,301 + -0.3
236,302 - +0.0
236,304 + -0.3
236,304 + -0.7
236,304 + +0.8
236,304 + -0.2
236,304 + +0.3
236,304 + -2.3
236,305 - +0.4
236,305 - +0.0
236,305 - -1.0
236,325 + +0.9
236,495 + +0.6
236,542 + +0.2
236,543 - -0.5
236,543 - -1.3
236,650 - EX31_RS18310 0.14 -0.2
236,650 - EX31_RS18310 0.14 +0.3
236,674 + EX31_RS18310 0.15 -1.4
236,686 + EX31_RS18310 0.15 +0.2
236,707 + EX31_RS18310 0.16 +1.3
236,708 - EX31_RS18310 0.16 -0.7
236,791 + EX31_RS18310 0.19 +1.8
236,792 - EX31_RS18310 0.20 -0.5
236,834 + EX31_RS18310 0.21 +0.4
236,834 + EX31_RS18310 0.21 +1.0
236,835 - EX31_RS18310 0.21 +0.4
236,835 - EX31_RS18310 0.21 -0.6
236,838 + EX31_RS18310 0.21 +0.7
236,838 + EX31_RS18310 0.21 +0.1
236,838 + EX31_RS18310 0.21 +0.7
236,838 + EX31_RS18310 0.21 +0.9
236,838 + EX31_RS18310 0.21 -1.1
236,838 + EX31_RS18310 0.21 -1.4
236,838 + EX31_RS18310 0.21 -2.3
236,838 + EX31_RS18310 0.21 +1.4
236,839 - EX31_RS18310 0.21 +0.0
236,839 - EX31_RS18310 0.21 -1.4
236,839 - EX31_RS18310 0.21 +0.0
236,839 - EX31_RS18310 0.21 -1.0
236,839 - EX31_RS18310 0.21 -1.1
236,839 - EX31_RS18310 0.21 +0.0
236,839 - EX31_RS18310 0.21 +2.7
236,839 - EX31_RS18310 0.21 -2.0
236,903 - EX31_RS18310 0.24 -2.1
236,962 + EX31_RS18310 0.27 -1.3
236,972 - EX31_RS18310 0.27 +0.2
237,071 - EX31_RS18310 0.31 +0.2
237,076 + EX31_RS18310 0.31 -0.7
237,077 - EX31_RS18310 0.31 +0.5
237,079 + EX31_RS18310 0.31 +0.3
237,079 + EX31_RS18310 0.31 -0.1
237,079 + EX31_RS18310 0.31 -1.9
237,080 - EX31_RS18310 0.32 +1.5
237,090 + EX31_RS18310 0.32 -2.1
237,091 - EX31_RS18310 0.32 +0.5
237,091 - EX31_RS18310 0.32 +0.7
237,091 - EX31_RS18310 0.32 -1.7
237,092 + EX31_RS18310 0.32 +1.4
237,092 + EX31_RS18310 0.32 -0.6
237,092 + EX31_RS18310 0.32 -1.8
237,092 + EX31_RS18310 0.32 +0.8
237,169 + EX31_RS18310 0.35 -0.1
237,288 + EX31_RS18310 0.40 +0.2
237,288 + EX31_RS18310 0.40 +1.0
237,288 + EX31_RS18310 0.40 +0.7
237,288 + EX31_RS18310 0.40 +0.0
237,289 - EX31_RS18310 0.40 -0.4
237,289 - EX31_RS18310 0.40 +0.1
237,289 - EX31_RS18310 0.40 +0.7

Or see this region's nucleotide sequence