Strain Fitness in Rahnella sp. WP5 around EX31_RS17705

Experiment: Ammonium chloride (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS17700 and EX31_RS17705 overlap by 4 nucleotidesEX31_RS17705 and EX31_RS17710 are separated by 26 nucleotidesEX31_RS17710 and EX31_RS17715 are separated by 140 nucleotides EX31_RS17700: EX31_RS17700 - efflux RND transporter permease subunit, at 91,078 to 94,152 _RS17700 EX31_RS17705: EX31_RS17705 - efflux RND transporter periplasmic adaptor subunit, at 94,149 to 95,291 _RS17705 EX31_RS17710: EX31_RS17710 - hypothetical protein, at 95,318 to 95,482 _RS17710 EX31_RS17715: EX31_RS17715 - MipA/OmpV family protein, at 95,623 to 96,408 _RS17715 Position (kb) 94 95 96Strain fitness (log2 ratio) -2 -1 0 1 2 3at 93.149 kb on - strand, within EX31_RS17700at 93.149 kb on - strand, within EX31_RS17700at 93.171 kb on + strand, within EX31_RS17700at 93.172 kb on - strand, within EX31_RS17700at 93.258 kb on + strand, within EX31_RS17700at 93.258 kb on + strand, within EX31_RS17700at 93.259 kb on - strand, within EX31_RS17700at 93.385 kb on - strand, within EX31_RS17700at 93.485 kb on - strand, within EX31_RS17700at 93.574 kb on - strand, within EX31_RS17700at 93.643 kb on - strand, within EX31_RS17700at 93.698 kb on + strand, within EX31_RS17700at 93.698 kb on + strand, within EX31_RS17700at 93.699 kb on - strand, within EX31_RS17700at 93.900 kb on - strandat 93.900 kb on - strandat 93.931 kb on - strandat 94.040 kb on + strandat 94.063 kb on + strandat 94.064 kb on - strandat 94.064 kb on - strandat 94.075 kb on - strandat 94.075 kb on - strandat 94.233 kb on + strandat 94.233 kb on + strandat 94.233 kb on + strandat 94.234 kb on - strandat 94.234 kb on - strandat 94.252 kb on - strandat 94.252 kb on - strandat 94.263 kb on - strandat 94.263 kb on - strandat 94.267 kb on + strand, within EX31_RS17705at 94.397 kb on + strand, within EX31_RS17705at 94.398 kb on - strand, within EX31_RS17705at 94.454 kb on + strand, within EX31_RS17705at 94.545 kb on + strand, within EX31_RS17705at 94.546 kb on - strand, within EX31_RS17705at 94.551 kb on + strand, within EX31_RS17705at 94.552 kb on - strand, within EX31_RS17705at 94.553 kb on + strand, within EX31_RS17705at 94.553 kb on + strand, within EX31_RS17705at 94.553 kb on + strand, within EX31_RS17705at 94.553 kb on + strand, within EX31_RS17705at 94.553 kb on + strand, within EX31_RS17705at 94.554 kb on - strand, within EX31_RS17705at 94.554 kb on - strand, within EX31_RS17705at 94.554 kb on - strand, within EX31_RS17705at 94.554 kb on - strand, within EX31_RS17705at 94.554 kb on - strand, within EX31_RS17705at 94.554 kb on - strand, within EX31_RS17705at 94.556 kb on + strand, within EX31_RS17705at 94.556 kb on + strand, within EX31_RS17705at 94.556 kb on + strand, within EX31_RS17705at 94.854 kb on + strand, within EX31_RS17705at 94.855 kb on - strand, within EX31_RS17705at 94.855 kb on - strand, within EX31_RS17705at 94.855 kb on - strand, within EX31_RS17705at 94.863 kb on - strand, within EX31_RS17705at 94.863 kb on - strand, within EX31_RS17705at 94.965 kb on - strand, within EX31_RS17705at 95.068 kb on - strand, within EX31_RS17705at 95.068 kb on - strand, within EX31_RS17705at 95.282 kb on + strandat 95.283 kb on - strandat 95.283 kb on - strandat 95.320 kb on - strandat 95.352 kb on + strand, within EX31_RS17710at 95.353 kb on - strand, within EX31_RS17710at 95.432 kb on + strand, within EX31_RS17710at 95.432 kb on + strand, within EX31_RS17710at 95.433 kb on - strand, within EX31_RS17710at 95.433 kb on - strand, within EX31_RS17710at 95.433 kb on - strand, within EX31_RS17710at 95.474 kb on - strandat 95.540 kb on - strandat 95.558 kb on + strandat 95.558 kb on + strandat 95.559 kb on - strandat 95.559 kb on - strandat 95.604 kb on + strandat 95.605 kb on - strandat 95.605 kb on - strandat 95.639 kb on + strandat 95.640 kb on - strandat 95.755 kb on + strand, within EX31_RS17715at 95.876 kb on - strand, within EX31_RS17715at 95.886 kb on + strand, within EX31_RS17715at 95.886 kb on + strand, within EX31_RS17715at 95.886 kb on + strand, within EX31_RS17715at 95.886 kb on + strand, within EX31_RS17715at 95.886 kb on + strand, within EX31_RS17715at 95.886 kb on + strand, within EX31_RS17715at 95.886 kb on + strand, within EX31_RS17715at 95.886 kb on + strand, within EX31_RS17715at 95.886 kb on + strand, within EX31_RS17715at 95.887 kb on - strand, within EX31_RS17715at 95.887 kb on - strand, within EX31_RS17715at 95.887 kb on - strand, within EX31_RS17715at 95.887 kb on - strand, within EX31_RS17715at 95.887 kb on - strand, within EX31_RS17715at 95.887 kb on - strand, within EX31_RS17715at 95.887 kb on - strand, within EX31_RS17715at 95.897 kb on - strand, within EX31_RS17715at 96.095 kb on + strand, within EX31_RS17715at 96.163 kb on + strand, within EX31_RS17715at 96.163 kb on + strand, within EX31_RS17715at 96.164 kb on - strand, within EX31_RS17715at 96.165 kb on + strand, within EX31_RS17715at 96.165 kb on + strand, within EX31_RS17715at 96.165 kb on + strand, within EX31_RS17715at 96.165 kb on + strand, within EX31_RS17715at 96.165 kb on + strand, within EX31_RS17715at 96.165 kb on + strand, within EX31_RS17715at 96.166 kb on - strand, within EX31_RS17715at 96.166 kb on - strand, within EX31_RS17715at 96.166 kb on - strand, within EX31_RS17715at 96.171 kb on + strand, within EX31_RS17715at 96.172 kb on - strand, within EX31_RS17715at 96.178 kb on + strand, within EX31_RS17715at 96.178 kb on + strand, within EX31_RS17715at 96.178 kb on + strand, within EX31_RS17715at 96.179 kb on - strand, within EX31_RS17715at 96.179 kb on - strand, within EX31_RS17715at 96.179 kb on - strand, within EX31_RS17715at 96.224 kb on - strand, within EX31_RS17715

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking
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93,149 - EX31_RS17700 0.67 -0.3
93,149 - EX31_RS17700 0.67 +0.8
93,171 + EX31_RS17700 0.68 +1.3
93,172 - EX31_RS17700 0.68 -0.9
93,258 + EX31_RS17700 0.71 -0.2
93,258 + EX31_RS17700 0.71 -1.0
93,259 - EX31_RS17700 0.71 +1.2
93,385 - EX31_RS17700 0.75 +0.2
93,485 - EX31_RS17700 0.78 +1.1
93,574 - EX31_RS17700 0.81 -1.1
93,643 - EX31_RS17700 0.83 +0.4
93,698 + EX31_RS17700 0.85 -2.6
93,698 + EX31_RS17700 0.85 -2.1
93,699 - EX31_RS17700 0.85 +0.8
93,900 - +1.7
93,900 - +0.0
93,931 - -0.6
94,040 + +0.4
94,063 + -0.4
94,064 - +0.4
94,064 - -0.7
94,075 - +0.4
94,075 - -0.3
94,233 + -0.2
94,233 + +0.5
94,233 + -0.8
94,234 - -0.6
94,234 - +0.3
94,252 - +0.2
94,252 - +1.1
94,263 - +0.9
94,263 - -2.2
94,267 + EX31_RS17705 0.10 -0.1
94,397 + EX31_RS17705 0.22 -0.7
94,398 - EX31_RS17705 0.22 +0.6
94,454 + EX31_RS17705 0.27 +1.0
94,545 + EX31_RS17705 0.35 +1.0
94,546 - EX31_RS17705 0.35 -0.1
94,551 + EX31_RS17705 0.35 +0.6
94,552 - EX31_RS17705 0.35 +1.3
94,553 + EX31_RS17705 0.35 -0.7
94,553 + EX31_RS17705 0.35 -1.2
94,553 + EX31_RS17705 0.35 -0.3
94,553 + EX31_RS17705 0.35 +0.8
94,553 + EX31_RS17705 0.35 +1.4
94,554 - EX31_RS17705 0.35 -1.3
94,554 - EX31_RS17705 0.35 -0.3
94,554 - EX31_RS17705 0.35 -0.6
94,554 - EX31_RS17705 0.35 -0.2
94,554 - EX31_RS17705 0.35 +0.7
94,554 - EX31_RS17705 0.35 -0.5
94,556 + EX31_RS17705 0.36 +0.1
94,556 + EX31_RS17705 0.36 +0.1
94,556 + EX31_RS17705 0.36 -0.6
94,854 + EX31_RS17705 0.62 +1.0
94,855 - EX31_RS17705 0.62 +0.0
94,855 - EX31_RS17705 0.62 -0.3
94,855 - EX31_RS17705 0.62 -1.2
94,863 - EX31_RS17705 0.62 -1.3
94,863 - EX31_RS17705 0.62 +1.0
94,965 - EX31_RS17705 0.71 -0.1
95,068 - EX31_RS17705 0.80 +0.1
95,068 - EX31_RS17705 0.80 -0.6
95,282 + +3.6
95,283 - +0.2
95,283 - +0.0
95,320 - +0.9
95,352 + EX31_RS17710 0.21 +0.6
95,353 - EX31_RS17710 0.21 -1.0
95,432 + EX31_RS17710 0.69 -0.2
95,432 + EX31_RS17710 0.69 -0.9
95,433 - EX31_RS17710 0.70 +0.6
95,433 - EX31_RS17710 0.70 +0.2
95,433 - EX31_RS17710 0.70 +0.2
95,474 - +0.1
95,540 - -1.2
95,558 + -0.8
95,558 + -0.6
95,559 - +0.8
95,559 - +0.7
95,604 + +0.2
95,605 - -0.2
95,605 - -2.2
95,639 + -0.3
95,640 - -0.3
95,755 + EX31_RS17715 0.17 -0.4
95,876 - EX31_RS17715 0.32 +0.4
95,886 + EX31_RS17715 0.33 +0.5
95,886 + EX31_RS17715 0.33 -1.9
95,886 + EX31_RS17715 0.33 -0.6
95,886 + EX31_RS17715 0.33 +0.6
95,886 + EX31_RS17715 0.33 -1.3
95,886 + EX31_RS17715 0.33 +0.8
95,886 + EX31_RS17715 0.33 +1.7
95,886 + EX31_RS17715 0.33 +0.1
95,886 + EX31_RS17715 0.33 +0.4
95,887 - EX31_RS17715 0.34 +0.4
95,887 - EX31_RS17715 0.34 +1.3
95,887 - EX31_RS17715 0.34 -1.5
95,887 - EX31_RS17715 0.34 +0.2
95,887 - EX31_RS17715 0.34 -0.3
95,887 - EX31_RS17715 0.34 +0.5
95,887 - EX31_RS17715 0.34 -1.6
95,897 - EX31_RS17715 0.35 +0.2
96,095 + EX31_RS17715 0.60 -0.2
96,163 + EX31_RS17715 0.69 -0.5
96,163 + EX31_RS17715 0.69 +0.6
96,164 - EX31_RS17715 0.69 +0.5
96,165 + EX31_RS17715 0.69 +0.4
96,165 + EX31_RS17715 0.69 +0.2
96,165 + EX31_RS17715 0.69 +1.1
96,165 + EX31_RS17715 0.69 +2.0
96,165 + EX31_RS17715 0.69 -0.2
96,165 + EX31_RS17715 0.69 +0.0
96,166 - EX31_RS17715 0.69 -0.1
96,166 - EX31_RS17715 0.69 -0.2
96,166 - EX31_RS17715 0.69 -1.2
96,171 + EX31_RS17715 0.70 -0.8
96,172 - EX31_RS17715 0.70 -0.4
96,178 + EX31_RS17715 0.71 -1.0
96,178 + EX31_RS17715 0.71 -0.7
96,178 + EX31_RS17715 0.71 +0.5
96,179 - EX31_RS17715 0.71 +0.9
96,179 - EX31_RS17715 0.71 -1.3
96,179 - EX31_RS17715 0.71 +0.7
96,224 - EX31_RS17715 0.76 +0.1

Or see this region's nucleotide sequence