Strain Fitness in Rahnella sp. WP5 around EX31_RS09160

Experiment: Ammonium chloride (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09155 and EX31_RS09160 are separated by 424 nucleotidesEX31_RS09160 and EX31_RS09165 are separated by 653 nucleotides EX31_RS09155: EX31_RS09155 - LacI family DNA-binding transcriptional regulator, at 25,604 to 26,632 _RS09155 EX31_RS09160: EX31_RS09160 - EAL domain-containing protein, at 27,057 to 29,141 _RS09160 EX31_RS09165: EX31_RS09165 - FadR family transcriptional regulator, at 29,795 to 30,529 _RS09165 Position (kb) 27 28 29 30Strain fitness (log2 ratio) -2 -1 0 1 2 3at 26.077 kb on + strand, within EX31_RS09155at 26.078 kb on - strand, within EX31_RS09155at 26.143 kb on + strand, within EX31_RS09155at 26.143 kb on + strand, within EX31_RS09155at 26.393 kb on - strand, within EX31_RS09155at 26.405 kb on - strand, within EX31_RS09155at 26.405 kb on - strand, within EX31_RS09155at 26.455 kb on + strand, within EX31_RS09155at 26.495 kb on - strand, within EX31_RS09155at 26.561 kb on - strandat 26.578 kb on + strandat 26.579 kb on - strandat 26.579 kb on - strandat 26.759 kb on - strandat 26.759 kb on - strandat 26.782 kb on + strandat 26.782 kb on + strandat 26.783 kb on - strandat 26.783 kb on - strandat 26.884 kb on + strandat 27.042 kb on + strandat 27.076 kb on + strandat 27.104 kb on - strandat 27.111 kb on + strandat 27.111 kb on + strandat 27.120 kb on + strandat 27.120 kb on + strandat 27.123 kb on - strandat 27.321 kb on - strand, within EX31_RS09160at 27.351 kb on - strand, within EX31_RS09160at 27.647 kb on + strand, within EX31_RS09160at 27.647 kb on + strand, within EX31_RS09160at 27.648 kb on - strand, within EX31_RS09160at 27.671 kb on + strand, within EX31_RS09160at 27.674 kb on + strand, within EX31_RS09160at 27.733 kb on + strand, within EX31_RS09160at 27.733 kb on + strand, within EX31_RS09160at 27.734 kb on - strand, within EX31_RS09160at 27.807 kb on + strand, within EX31_RS09160at 27.954 kb on + strand, within EX31_RS09160at 27.954 kb on + strand, within EX31_RS09160at 27.954 kb on + strand, within EX31_RS09160at 27.954 kb on + strand, within EX31_RS09160at 27.954 kb on + strand, within EX31_RS09160at 27.954 kb on + strand, within EX31_RS09160at 27.955 kb on - strand, within EX31_RS09160at 27.955 kb on - strand, within EX31_RS09160at 27.955 kb on - strand, within EX31_RS09160at 27.955 kb on - strand, within EX31_RS09160at 27.955 kb on - strand, within EX31_RS09160at 28.195 kb on + strand, within EX31_RS09160at 28.196 kb on - strand, within EX31_RS09160at 28.317 kb on + strand, within EX31_RS09160at 28.411 kb on + strand, within EX31_RS09160at 28.424 kb on + strand, within EX31_RS09160at 28.424 kb on + strand, within EX31_RS09160at 28.424 kb on + strand, within EX31_RS09160at 28.424 kb on + strand, within EX31_RS09160at 28.425 kb on - strand, within EX31_RS09160at 28.430 kb on + strand, within EX31_RS09160at 28.879 kb on - strand, within EX31_RS09160at 28.879 kb on - strand, within EX31_RS09160at 29.066 kb on + strandat 29.066 kb on + strandat 29.066 kb on + strandat 29.067 kb on - strandat 29.067 kb on - strandat 29.067 kb on - strandat 29.146 kb on - strandat 29.146 kb on - strandat 29.146 kb on - strandat 29.149 kb on + strandat 29.149 kb on + strandat 29.150 kb on - strandat 29.192 kb on + strandat 29.193 kb on - strandat 29.194 kb on + strandat 29.194 kb on + strandat 29.194 kb on + strandat 29.194 kb on + strandat 29.194 kb on + strandat 29.194 kb on + strandat 29.195 kb on - strandat 29.195 kb on - strandat 29.196 kb on + strandat 29.196 kb on + strandat 29.196 kb on + strandat 29.196 kb on + strandat 29.196 kb on + strandat 29.196 kb on + strandat 29.197 kb on - strandat 29.197 kb on - strandat 29.197 kb on - strandat 29.197 kb on - strandat 29.298 kb on + strandat 29.455 kb on + strandat 29.456 kb on - strandat 29.500 kb on - strandat 29.608 kb on + strandat 29.609 kb on - strandat 29.609 kb on - strandat 29.611 kb on - strandat 29.772 kb on - strandat 29.794 kb on + strandat 29.794 kb on + strandat 29.794 kb on + strandat 29.794 kb on + strandat 29.795 kb on - strandat 29.795 kb on - strandat 29.827 kb on + strandat 29.859 kb on + strandat 29.859 kb on + strandat 29.860 kb on - strandat 29.871 kb on + strand, within EX31_RS09165at 29.872 kb on - strand, within EX31_RS09165at 29.872 kb on - strand, within EX31_RS09165at 30.131 kb on + strand, within EX31_RS09165

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking
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26,077 + EX31_RS09155 0.46 -0.1
26,078 - EX31_RS09155 0.46 -0.5
26,143 + EX31_RS09155 0.52 -1.4
26,143 + EX31_RS09155 0.52 +0.1
26,393 - EX31_RS09155 0.77 +0.5
26,405 - EX31_RS09155 0.78 -2.1
26,405 - EX31_RS09155 0.78 -0.1
26,455 + EX31_RS09155 0.83 +0.0
26,495 - EX31_RS09155 0.87 -1.3
26,561 - -0.2
26,578 + -1.3
26,579 - +0.2
26,579 - -0.4
26,759 - -0.1
26,759 - +0.5
26,782 + -1.4
26,782 + +0.3
26,783 - +0.6
26,783 - +1.2
26,884 + -1.1
27,042 + -0.2
27,076 + +1.9
27,104 - +2.2
27,111 + +0.7
27,111 + +0.3
27,120 + +0.6
27,120 + +0.2
27,123 - -0.9
27,321 - EX31_RS09160 0.13 +0.9
27,351 - EX31_RS09160 0.14 +1.6
27,647 + EX31_RS09160 0.28 +2.5
27,647 + EX31_RS09160 0.28 -0.1
27,648 - EX31_RS09160 0.28 -0.1
27,671 + EX31_RS09160 0.29 +1.2
27,674 + EX31_RS09160 0.30 +1.9
27,733 + EX31_RS09160 0.32 +2.5
27,733 + EX31_RS09160 0.32 +1.0
27,734 - EX31_RS09160 0.32 +2.5
27,807 + EX31_RS09160 0.36 -0.4
27,954 + EX31_RS09160 0.43 +1.0
27,954 + EX31_RS09160 0.43 +0.5
27,954 + EX31_RS09160 0.43 +1.3
27,954 + EX31_RS09160 0.43 +1.0
27,954 + EX31_RS09160 0.43 -1.3
27,954 + EX31_RS09160 0.43 -1.1
27,955 - EX31_RS09160 0.43 -0.1
27,955 - EX31_RS09160 0.43 +0.8
27,955 - EX31_RS09160 0.43 +0.9
27,955 - EX31_RS09160 0.43 -0.7
27,955 - EX31_RS09160 0.43 +1.3
28,195 + EX31_RS09160 0.55 +0.5
28,196 - EX31_RS09160 0.55 -0.5
28,317 + EX31_RS09160 0.60 +0.2
28,411 + EX31_RS09160 0.65 +0.6
28,424 + EX31_RS09160 0.66 +0.3
28,424 + EX31_RS09160 0.66 -0.3
28,424 + EX31_RS09160 0.66 +1.9
28,424 + EX31_RS09160 0.66 +0.3
28,425 - EX31_RS09160 0.66 +0.9
28,430 + EX31_RS09160 0.66 +0.5
28,879 - EX31_RS09160 0.87 +0.1
28,879 - EX31_RS09160 0.87 +3.1
29,066 + +0.9
29,066 + -0.9
29,066 + -0.5
29,067 - -0.9
29,067 - +1.9
29,067 - +0.5
29,146 - +0.3
29,146 - +0.7
29,146 - -0.0
29,149 + +0.9
29,149 + +0.1
29,150 - +1.6
29,192 + -1.7
29,193 - +0.5
29,194 + -0.9
29,194 + +0.3
29,194 + -0.1
29,194 + +1.2
29,194 + +1.3
29,194 + -0.3
29,195 - +0.1
29,195 - -0.4
29,196 + +2.9
29,196 + -0.9
29,196 + -0.5
29,196 + +0.6
29,196 + +0.2
29,196 + -2.1
29,197 - +0.3
29,197 - +1.1
29,197 - -0.1
29,197 - -0.8
29,298 + +1.6
29,455 + -1.1
29,456 - +0.6
29,500 - -0.1
29,608 + -1.4
29,609 - +1.0
29,609 - +0.5
29,611 - -0.3
29,772 - -0.1
29,794 + +1.5
29,794 + +0.6
29,794 + -0.7
29,794 + +0.8
29,795 - +0.3
29,795 - +0.6
29,827 + -0.7
29,859 + +0.9
29,859 + -0.4
29,860 - -0.3
29,871 + EX31_RS09165 0.10 +0.7
29,872 - EX31_RS09165 0.10 -0.1
29,872 - EX31_RS09165 0.10 +1.9
30,131 + EX31_RS09165 0.46 +0.8

Or see this region's nucleotide sequence