Strain Fitness in Rahnella sp. WP5 around EX31_RS07175

Experiment: Ammonium chloride (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07170 and EX31_RS07175 are separated by 46 nucleotidesEX31_RS07175 and EX31_RS07180 are separated by 114 nucleotidesEX31_RS07180 and EX31_RS07185 are separated by 214 nucleotides EX31_RS07170: EX31_RS07170 - glycogen debranching protein GlgX, at 229,657 to 231,939 _RS07170 EX31_RS07175: EX31_RS07175 - FAD:protein FMN transferase ApbE, at 231,986 to 233,026 _RS07175 EX31_RS07180: EX31_RS07180 - DNA endonuclease SmrA, at 233,141 to 233,707 _RS07180 EX31_RS07185: EX31_RS07185 - mannosyl-3-phosphoglycerate phosphatase-related protein, at 233,922 to 234,737 _RS07185 Position (kb) 231 232 233 234Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 231.148 kb on + strand, within EX31_RS07170at 231.208 kb on + strand, within EX31_RS07170at 231.208 kb on + strand, within EX31_RS07170at 231.280 kb on + strand, within EX31_RS07170at 231.280 kb on + strand, within EX31_RS07170at 231.281 kb on - strand, within EX31_RS07170at 231.342 kb on + strand, within EX31_RS07170at 231.345 kb on + strand, within EX31_RS07170at 231.345 kb on + strand, within EX31_RS07170at 231.427 kb on - strand, within EX31_RS07170at 231.437 kb on - strand, within EX31_RS07170at 231.819 kb on + strandat 232.005 kb on + strandat 232.006 kb on - strandat 232.029 kb on + strandat 232.030 kb on - strandat 232.066 kb on - strandat 232.223 kb on - strand, within EX31_RS07175at 232.223 kb on - strand, within EX31_RS07175at 232.223 kb on - strand, within EX31_RS07175at 232.255 kb on - strand, within EX31_RS07175at 232.255 kb on - strand, within EX31_RS07175at 232.255 kb on - strand, within EX31_RS07175at 232.262 kb on - strand, within EX31_RS07175at 232.266 kb on + strand, within EX31_RS07175at 232.420 kb on - strand, within EX31_RS07175at 232.420 kb on - strand, within EX31_RS07175at 232.443 kb on - strand, within EX31_RS07175at 232.443 kb on - strand, within EX31_RS07175at 232.471 kb on - strand, within EX31_RS07175at 232.491 kb on - strand, within EX31_RS07175at 232.500 kb on + strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.501 kb on - strand, within EX31_RS07175at 232.556 kb on - strand, within EX31_RS07175at 232.566 kb on - strand, within EX31_RS07175at 232.669 kb on + strand, within EX31_RS07175at 232.669 kb on + strand, within EX31_RS07175at 232.670 kb on - strand, within EX31_RS07175at 232.768 kb on - strand, within EX31_RS07175at 232.768 kb on - strand, within EX31_RS07175at 232.803 kb on + strand, within EX31_RS07175at 232.804 kb on - strand, within EX31_RS07175at 232.804 kb on - strand, within EX31_RS07175at 232.832 kb on - strand, within EX31_RS07175at 232.903 kb on - strand, within EX31_RS07175at 232.949 kb on - strandat 232.968 kb on - strandat 232.968 kb on - strandat 232.997 kb on - strandat 232.997 kb on - strandat 232.997 kb on - strandat 233.008 kb on - strandat 233.033 kb on - strandat 233.033 kb on - strandat 233.033 kb on - strandat 233.069 kb on - strandat 233.093 kb on + strandat 233.093 kb on + strandat 233.093 kb on + strandat 233.093 kb on + strandat 233.212 kb on - strand, within EX31_RS07180at 233.294 kb on - strand, within EX31_RS07180at 233.296 kb on - strand, within EX31_RS07180at 233.498 kb on + strand, within EX31_RS07180at 233.499 kb on - strand, within EX31_RS07180at 233.499 kb on - strand, within EX31_RS07180at 233.515 kb on - strand, within EX31_RS07180at 233.577 kb on - strand, within EX31_RS07180at 233.632 kb on - strand, within EX31_RS07180at 233.664 kb on - strandat 233.664 kb on - strandat 233.714 kb on - strandat 233.842 kb on + strandat 233.843 kb on - strandat 233.844 kb on + strandat 233.845 kb on - strandat 233.848 kb on + strandat 233.848 kb on + strandat 233.848 kb on + strandat 233.848 kb on + strandat 233.848 kb on + strandat 233.848 kb on + strandat 233.849 kb on - strandat 233.849 kb on - strandat 233.849 kb on - strandat 233.849 kb on - strandat 233.849 kb on - strandat 233.849 kb on - strandat 233.849 kb on - strandat 233.849 kb on - strandat 233.850 kb on + strandat 233.850 kb on + strandat 233.850 kb on + strandat 233.850 kb on + strandat 233.850 kb on + strandat 233.850 kb on + strandat 233.851 kb on - strandat 233.851 kb on - strandat 233.851 kb on - strandat 233.854 kb on + strandat 233.854 kb on + strandat 233.855 kb on - strandat 233.855 kb on - strandat 233.855 kb on - strandat 233.893 kb on - strandat 233.949 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking
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231,148 + EX31_RS07170 0.65 +0.2
231,208 + EX31_RS07170 0.68 -1.1
231,208 + EX31_RS07170 0.68 +0.1
231,280 + EX31_RS07170 0.71 -0.1
231,280 + EX31_RS07170 0.71 -0.4
231,281 - EX31_RS07170 0.71 +1.9
231,342 + EX31_RS07170 0.74 +1.6
231,345 + EX31_RS07170 0.74 +0.1
231,345 + EX31_RS07170 0.74 +0.4
231,427 - EX31_RS07170 0.78 +1.5
231,437 - EX31_RS07170 0.78 +1.3
231,819 + +0.9
232,005 + -0.4
232,006 - +0.3
232,029 + +0.3
232,030 - +0.6
232,066 - +1.2
232,223 - EX31_RS07175 0.23 -1.0
232,223 - EX31_RS07175 0.23 +0.2
232,223 - EX31_RS07175 0.23 -0.6
232,255 - EX31_RS07175 0.26 +0.3
232,255 - EX31_RS07175 0.26 +1.2
232,255 - EX31_RS07175 0.26 +0.8
232,262 - EX31_RS07175 0.27 +0.4
232,266 + EX31_RS07175 0.27 -0.4
232,420 - EX31_RS07175 0.42 -1.9
232,420 - EX31_RS07175 0.42 +0.5
232,443 - EX31_RS07175 0.44 -0.4
232,443 - EX31_RS07175 0.44 +2.3
232,471 - EX31_RS07175 0.47 -3.1
232,491 - EX31_RS07175 0.49 -1.7
232,500 + EX31_RS07175 0.49 -0.9
232,501 - EX31_RS07175 0.49 -0.1
232,501 - EX31_RS07175 0.49 -1.3
232,501 - EX31_RS07175 0.49 +1.9
232,501 - EX31_RS07175 0.49 +0.5
232,501 - EX31_RS07175 0.49 -1.1
232,501 - EX31_RS07175 0.49 -1.6
232,501 - EX31_RS07175 0.49 -0.9
232,501 - EX31_RS07175 0.49 -0.1
232,501 - EX31_RS07175 0.49 -0.8
232,501 - EX31_RS07175 0.49 -1.2
232,501 - EX31_RS07175 0.49 -2.4
232,501 - EX31_RS07175 0.49 -0.8
232,501 - EX31_RS07175 0.49 -0.9
232,501 - EX31_RS07175 0.49 -0.7
232,501 - EX31_RS07175 0.49 -0.8
232,501 - EX31_RS07175 0.49 +1.9
232,501 - EX31_RS07175 0.49 -1.8
232,556 - EX31_RS07175 0.55 -1.9
232,566 - EX31_RS07175 0.56 -0.1
232,669 + EX31_RS07175 0.66 +0.6
232,669 + EX31_RS07175 0.66 +0.6
232,670 - EX31_RS07175 0.66 -1.3
232,768 - EX31_RS07175 0.75 -0.1
232,768 - EX31_RS07175 0.75 -1.3
232,803 + EX31_RS07175 0.78 -1.4
232,804 - EX31_RS07175 0.79 +0.3
232,804 - EX31_RS07175 0.79 -1.7
232,832 - EX31_RS07175 0.81 -0.9
232,903 - EX31_RS07175 0.88 -0.2
232,949 - +1.8
232,968 - -0.7
232,968 - -0.4
232,997 - -0.2
232,997 - -3.0
232,997 - -0.1
233,008 - +1.0
233,033 - +0.4
233,033 - +1.2
233,033 - -0.0
233,069 - +0.2
233,093 + +0.9
233,093 + +0.9
233,093 + +1.9
233,093 + +0.6
233,212 - EX31_RS07180 0.13 +0.2
233,294 - EX31_RS07180 0.27 +0.9
233,296 - EX31_RS07180 0.27 -0.2
233,498 + EX31_RS07180 0.63 -0.1
233,499 - EX31_RS07180 0.63 -0.2
233,499 - EX31_RS07180 0.63 +0.8
233,515 - EX31_RS07180 0.66 -0.1
233,577 - EX31_RS07180 0.77 +1.9
233,632 - EX31_RS07180 0.87 -0.9
233,664 - +0.3
233,664 - +2.5
233,714 - +2.5
233,842 + +0.9
233,843 - +0.7
233,844 + +0.9
233,845 - +0.7
233,848 + -1.1
233,848 + +0.2
233,848 + -0.4
233,848 + -0.4
233,848 + -0.8
233,848 + -1.6
233,849 - +0.9
233,849 - +0.1
233,849 - -0.1
233,849 - -1.1
233,849 - -1.6
233,849 - -1.3
233,849 - +0.3
233,849 - -1.6
233,850 + -0.4
233,850 + -0.8
233,850 + +2.1
233,850 + -0.6
233,850 + +0.4
233,850 + +1.3
233,851 - +1.5
233,851 - +0.1
233,851 - -0.3
233,854 + +0.3
233,854 + -1.1
233,855 - -1.1
233,855 - +1.1
233,855 - -0.4
233,893 - +0.9
233,949 - +1.5

Or see this region's nucleotide sequence