Strain Fitness in Rahnella sp. WP5 around EX31_RS03450

Experiment: Ammonium chloride (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS03445 and EX31_RS03450 are separated by 228 nucleotidesEX31_RS03450 and EX31_RS03455 are separated by 22 nucleotides EX31_RS03445: EX31_RS03445 - ABC transporter ATP-binding protein, at 178,354 to 179,445 _RS03445 EX31_RS03450: EX31_RS03450 - glycerophosphodiester phosphodiesterase, at 179,674 to 180,504 _RS03450 EX31_RS03455: EX31_RS03455 - ROK family transcriptional regulator, at 180,527 to 181,639 _RS03455 Position (kb) 179 180 181Strain fitness (log2 ratio) -2 -1 0 1 2at 178.781 kb on + strand, within EX31_RS03445at 178.781 kb on + strand, within EX31_RS03445at 178.781 kb on + strand, within EX31_RS03445at 178.781 kb on + strand, within EX31_RS03445at 178.880 kb on + strand, within EX31_RS03445at 178.880 kb on + strand, within EX31_RS03445at 178.880 kb on + strand, within EX31_RS03445at 178.881 kb on - strand, within EX31_RS03445at 178.881 kb on - strand, within EX31_RS03445at 178.881 kb on - strand, within EX31_RS03445at 178.881 kb on - strand, within EX31_RS03445at 178.881 kb on - strand, within EX31_RS03445at 178.998 kb on + strand, within EX31_RS03445at 178.998 kb on + strand, within EX31_RS03445at 179.131 kb on + strand, within EX31_RS03445at 179.132 kb on - strand, within EX31_RS03445at 179.132 kb on - strand, within EX31_RS03445at 179.163 kb on + strand, within EX31_RS03445at 179.164 kb on - strand, within EX31_RS03445at 179.196 kb on - strand, within EX31_RS03445at 179.241 kb on + strand, within EX31_RS03445at 179.241 kb on + strand, within EX31_RS03445at 179.397 kb on - strandat 179.419 kb on - strandat 179.419 kb on - strandat 179.445 kb on + strandat 179.445 kb on + strandat 179.445 kb on + strandat 179.445 kb on + strandat 179.446 kb on - strandat 179.446 kb on - strandat 179.446 kb on - strandat 179.446 kb on - strandat 179.446 kb on - strandat 179.464 kb on + strandat 179.465 kb on - strandat 179.659 kb on + strandat 179.659 kb on + strandat 179.659 kb on + strandat 179.660 kb on - strandat 179.682 kb on + strandat 179.683 kb on - strandat 179.810 kb on + strand, within EX31_RS03450at 179.810 kb on + strand, within EX31_RS03450at 179.810 kb on + strand, within EX31_RS03450at 179.810 kb on + strand, within EX31_RS03450at 179.810 kb on + strand, within EX31_RS03450at 179.810 kb on + strand, within EX31_RS03450at 179.810 kb on + strand, within EX31_RS03450at 179.810 kb on + strand, within EX31_RS03450at 179.811 kb on - strand, within EX31_RS03450at 179.811 kb on - strand, within EX31_RS03450at 179.811 kb on - strand, within EX31_RS03450at 179.811 kb on - strand, within EX31_RS03450at 179.811 kb on - strand, within EX31_RS03450at 179.815 kb on - strand, within EX31_RS03450at 179.815 kb on - strand, within EX31_RS03450at 179.815 kb on - strand, within EX31_RS03450at 179.815 kb on - strand, within EX31_RS03450at 179.815 kb on - strand, within EX31_RS03450at 179.815 kb on - strand, within EX31_RS03450at 179.815 kb on - strand, within EX31_RS03450at 179.815 kb on - strand, within EX31_RS03450at 179.832 kb on + strand, within EX31_RS03450at 179.832 kb on + strand, within EX31_RS03450at 179.832 kb on + strand, within EX31_RS03450at 179.833 kb on - strand, within EX31_RS03450at 179.833 kb on - strand, within EX31_RS03450at 179.918 kb on + strand, within EX31_RS03450at 179.940 kb on + strand, within EX31_RS03450at 179.941 kb on - strand, within EX31_RS03450at 179.941 kb on - strand, within EX31_RS03450at 179.944 kb on + strand, within EX31_RS03450at 179.944 kb on + strand, within EX31_RS03450at 179.944 kb on + strand, within EX31_RS03450at 179.944 kb on + strand, within EX31_RS03450at 179.944 kb on + strand, within EX31_RS03450at 179.944 kb on + strand, within EX31_RS03450at 179.944 kb on + strand, within EX31_RS03450at 179.945 kb on - strand, within EX31_RS03450at 179.945 kb on - strand, within EX31_RS03450at 179.945 kb on - strand, within EX31_RS03450at 179.945 kb on - strand, within EX31_RS03450at 179.945 kb on - strand, within EX31_RS03450at 179.945 kb on - strand, within EX31_RS03450at 179.945 kb on - strand, within EX31_RS03450at 179.945 kb on - strand, within EX31_RS03450at 179.978 kb on + strand, within EX31_RS03450at 179.978 kb on + strand, within EX31_RS03450at 179.979 kb on - strand, within EX31_RS03450at 179.979 kb on - strand, within EX31_RS03450at 179.979 kb on - strand, within EX31_RS03450at 179.979 kb on - strand, within EX31_RS03450at 179.989 kb on - strand, within EX31_RS03450at 180.067 kb on + strand, within EX31_RS03450at 180.068 kb on - strand, within EX31_RS03450at 180.068 kb on - strand, within EX31_RS03450at 180.114 kb on + strand, within EX31_RS03450at 180.114 kb on + strand, within EX31_RS03450at 180.115 kb on - strand, within EX31_RS03450at 180.115 kb on - strand, within EX31_RS03450at 180.133 kb on - strand, within EX31_RS03450at 180.176 kb on + strand, within EX31_RS03450at 180.177 kb on - strand, within EX31_RS03450at 180.177 kb on - strand, within EX31_RS03450at 180.205 kb on + strand, within EX31_RS03450at 180.206 kb on - strand, within EX31_RS03450at 180.262 kb on + strand, within EX31_RS03450at 180.263 kb on - strand, within EX31_RS03450at 180.295 kb on + strand, within EX31_RS03450at 180.295 kb on + strand, within EX31_RS03450at 180.297 kb on + strand, within EX31_RS03450at 180.297 kb on + strand, within EX31_RS03450at 180.297 kb on + strand, within EX31_RS03450at 180.298 kb on - strand, within EX31_RS03450at 180.317 kb on + strand, within EX31_RS03450at 180.325 kb on + strand, within EX31_RS03450at 180.325 kb on + strand, within EX31_RS03450at 180.325 kb on + strand, within EX31_RS03450at 180.325 kb on + strand, within EX31_RS03450at 180.326 kb on - strand, within EX31_RS03450at 180.326 kb on - strand, within EX31_RS03450at 180.367 kb on + strand, within EX31_RS03450at 180.368 kb on - strand, within EX31_RS03450at 180.385 kb on + strand, within EX31_RS03450at 180.385 kb on + strand, within EX31_RS03450at 180.390 kb on + strand, within EX31_RS03450at 180.390 kb on + strand, within EX31_RS03450at 180.390 kb on + strand, within EX31_RS03450at 180.435 kb on + strandat 180.435 kb on + strandat 180.435 kb on + strandat 180.435 kb on + strandat 180.436 kb on - strandat 180.460 kb on + strandat 180.523 kb on + strandat 180.523 kb on + strandat 180.523 kb on + strandat 180.523 kb on + strandat 180.526 kb on + strandat 180.526 kb on + strandat 180.526 kb on + strandat 180.527 kb on - strandat 180.527 kb on - strandat 180.535 kb on - strandat 180.679 kb on - strand, within EX31_RS03455at 180.845 kb on - strand, within EX31_RS03455at 180.888 kb on + strand, within EX31_RS03455at 180.889 kb on - strand, within EX31_RS03455at 180.937 kb on + strand, within EX31_RS03455at 180.965 kb on + strand, within EX31_RS03455at 180.965 kb on + strand, within EX31_RS03455at 181.127 kb on + strand, within EX31_RS03455at 181.128 kb on - strand, within EX31_RS03455at 181.135 kb on + strand, within EX31_RS03455at 181.135 kb on + strand, within EX31_RS03455at 181.136 kb on - strand, within EX31_RS03455at 181.136 kb on - strand, within EX31_RS03455at 181.148 kb on + strand, within EX31_RS03455at 181.158 kb on + strand, within EX31_RS03455at 181.158 kb on + strand, within EX31_RS03455at 181.159 kb on - strand, within EX31_RS03455at 181.159 kb on - strand, within EX31_RS03455at 181.165 kb on + strand, within EX31_RS03455at 181.166 kb on - strand, within EX31_RS03455at 181.270 kb on + strand, within EX31_RS03455at 181.286 kb on + strand, within EX31_RS03455at 181.286 kb on + strand, within EX31_RS03455at 181.286 kb on + strand, within EX31_RS03455at 181.286 kb on + strand, within EX31_RS03455at 181.287 kb on - strand, within EX31_RS03455at 181.287 kb on - strand, within EX31_RS03455at 181.287 kb on - strand, within EX31_RS03455at 181.288 kb on + strand, within EX31_RS03455at 181.288 kb on + strand, within EX31_RS03455at 181.338 kb on + strand, within EX31_RS03455at 181.453 kb on + strand, within EX31_RS03455at 181.454 kb on - strand, within EX31_RS03455at 181.458 kb on + strand, within EX31_RS03455

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking
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178,781 + EX31_RS03445 0.39 -0.3
178,781 + EX31_RS03445 0.39 -0.2
178,781 + EX31_RS03445 0.39 -0.8
178,781 + EX31_RS03445 0.39 +0.0
178,880 + EX31_RS03445 0.48 +0.6
178,880 + EX31_RS03445 0.48 +0.1
178,880 + EX31_RS03445 0.48 -2.4
178,881 - EX31_RS03445 0.48 +1.1
178,881 - EX31_RS03445 0.48 +1.0
178,881 - EX31_RS03445 0.48 -0.7
178,881 - EX31_RS03445 0.48 +0.6
178,881 - EX31_RS03445 0.48 +1.5
178,998 + EX31_RS03445 0.59 +0.0
178,998 + EX31_RS03445 0.59 +0.1
179,131 + EX31_RS03445 0.71 -0.3
179,132 - EX31_RS03445 0.71 +0.2
179,132 - EX31_RS03445 0.71 +2.0
179,163 + EX31_RS03445 0.74 +0.2
179,164 - EX31_RS03445 0.74 +0.2
179,196 - EX31_RS03445 0.77 -1.4
179,241 + EX31_RS03445 0.81 +0.7
179,241 + EX31_RS03445 0.81 -2.1
179,397 - -1.6
179,419 - +0.4
179,419 - +0.3
179,445 + +0.4
179,445 + -0.1
179,445 + +0.8
179,445 + -0.4
179,446 - -0.4
179,446 - -0.1
179,446 - -0.9
179,446 - +0.2
179,446 - -0.3
179,464 + +0.7
179,465 - +0.2
179,659 + -0.3
179,659 + -1.1
179,659 + +1.1
179,660 - -0.4
179,682 + +0.1
179,683 - -0.0
179,810 + EX31_RS03450 0.16 +0.7
179,810 + EX31_RS03450 0.16 +0.1
179,810 + EX31_RS03450 0.16 -1.1
179,810 + EX31_RS03450 0.16 -1.1
179,810 + EX31_RS03450 0.16 -0.2
179,810 + EX31_RS03450 0.16 +0.7
179,810 + EX31_RS03450 0.16 +0.5
179,810 + EX31_RS03450 0.16 -0.3
179,811 - EX31_RS03450 0.16 +0.5
179,811 - EX31_RS03450 0.16 +0.8
179,811 - EX31_RS03450 0.16 +0.3
179,811 - EX31_RS03450 0.16 +0.5
179,811 - EX31_RS03450 0.16 +0.1
179,815 - EX31_RS03450 0.17 +0.5
179,815 - EX31_RS03450 0.17 +0.4
179,815 - EX31_RS03450 0.17 +0.4
179,815 - EX31_RS03450 0.17 +0.8
179,815 - EX31_RS03450 0.17 -1.1
179,815 - EX31_RS03450 0.17 +0.5
179,815 - EX31_RS03450 0.17 -0.0
179,815 - EX31_RS03450 0.17 -2.1
179,832 + EX31_RS03450 0.19 +0.3
179,832 + EX31_RS03450 0.19 +0.1
179,832 + EX31_RS03450 0.19 -0.4
179,833 - EX31_RS03450 0.19 -0.5
179,833 - EX31_RS03450 0.19 -0.1
179,918 + EX31_RS03450 0.29 -0.1
179,940 + EX31_RS03450 0.32 -0.1
179,941 - EX31_RS03450 0.32 +1.0
179,941 - EX31_RS03450 0.32 -0.3
179,944 + EX31_RS03450 0.32 +1.5
179,944 + EX31_RS03450 0.32 +0.3
179,944 + EX31_RS03450 0.32 -0.9
179,944 + EX31_RS03450 0.32 -0.3
179,944 + EX31_RS03450 0.32 -0.3
179,944 + EX31_RS03450 0.32 +0.3
179,944 + EX31_RS03450 0.32 -0.3
179,945 - EX31_RS03450 0.33 +1.8
179,945 - EX31_RS03450 0.33 +1.8
179,945 - EX31_RS03450 0.33 -0.4
179,945 - EX31_RS03450 0.33 -0.1
179,945 - EX31_RS03450 0.33 +0.0
179,945 - EX31_RS03450 0.33 +1.1
179,945 - EX31_RS03450 0.33 -0.5
179,945 - EX31_RS03450 0.33 +1.0
179,978 + EX31_RS03450 0.37 +1.1
179,978 + EX31_RS03450 0.37 -0.0
179,979 - EX31_RS03450 0.37 +0.9
179,979 - EX31_RS03450 0.37 +1.4
179,979 - EX31_RS03450 0.37 +1.3
179,979 - EX31_RS03450 0.37 +0.5
179,989 - EX31_RS03450 0.38 +0.2
180,067 + EX31_RS03450 0.47 +0.2
180,068 - EX31_RS03450 0.47 -0.4
180,068 - EX31_RS03450 0.47 -0.0
180,114 + EX31_RS03450 0.53 +0.5
180,114 + EX31_RS03450 0.53 +1.4
180,115 - EX31_RS03450 0.53 +0.2
180,115 - EX31_RS03450 0.53 -1.1
180,133 - EX31_RS03450 0.55 -0.4
180,176 + EX31_RS03450 0.60 +0.0
180,177 - EX31_RS03450 0.61 +1.6
180,177 - EX31_RS03450 0.61 +0.3
180,205 + EX31_RS03450 0.64 +0.7
180,206 - EX31_RS03450 0.64 +0.1
180,262 + EX31_RS03450 0.71 +0.1
180,263 - EX31_RS03450 0.71 -0.5
180,295 + EX31_RS03450 0.75 -0.7
180,295 + EX31_RS03450 0.75 -0.7
180,297 + EX31_RS03450 0.75 +0.2
180,297 + EX31_RS03450 0.75 +0.3
180,297 + EX31_RS03450 0.75 +0.8
180,298 - EX31_RS03450 0.75 +0.2
180,317 + EX31_RS03450 0.77 +0.9
180,325 + EX31_RS03450 0.78 +0.2
180,325 + EX31_RS03450 0.78 +0.5
180,325 + EX31_RS03450 0.78 +0.6
180,325 + EX31_RS03450 0.78 +0.6
180,326 - EX31_RS03450 0.78 +1.0
180,326 - EX31_RS03450 0.78 +0.1
180,367 + EX31_RS03450 0.83 +0.6
180,368 - EX31_RS03450 0.84 -1.2
180,385 + EX31_RS03450 0.86 -0.4
180,385 + EX31_RS03450 0.86 -0.0
180,390 + EX31_RS03450 0.86 +0.1
180,390 + EX31_RS03450 0.86 -0.6
180,390 + EX31_RS03450 0.86 +0.7
180,435 + +0.6
180,435 + -0.0
180,435 + -0.9
180,435 + +0.0
180,436 - +0.9
180,460 + -1.1
180,523 + +0.5
180,523 + -0.2
180,523 + +2.5
180,523 + -0.4
180,526 + -0.4
180,526 + +1.1
180,526 + +0.3
180,527 - -1.0
180,527 - +0.3
180,535 - -0.4
180,679 - EX31_RS03455 0.14 +0.5
180,845 - EX31_RS03455 0.29 -0.7
180,888 + EX31_RS03455 0.32 -0.8
180,889 - EX31_RS03455 0.33 +0.9
180,937 + EX31_RS03455 0.37 +0.2
180,965 + EX31_RS03455 0.39 +0.4
180,965 + EX31_RS03455 0.39 -0.0
181,127 + EX31_RS03455 0.54 +0.3
181,128 - EX31_RS03455 0.54 +0.5
181,135 + EX31_RS03455 0.55 +0.1
181,135 + EX31_RS03455 0.55 +0.5
181,136 - EX31_RS03455 0.55 +0.3
181,136 - EX31_RS03455 0.55 -0.5
181,148 + EX31_RS03455 0.56 -0.2
181,158 + EX31_RS03455 0.57 +1.0
181,158 + EX31_RS03455 0.57 -2.2
181,159 - EX31_RS03455 0.57 +0.3
181,159 - EX31_RS03455 0.57 -1.5
181,165 + EX31_RS03455 0.57 +0.5
181,166 - EX31_RS03455 0.57 -1.5
181,270 + EX31_RS03455 0.67 +0.4
181,286 + EX31_RS03455 0.68 +0.0
181,286 + EX31_RS03455 0.68 +0.1
181,286 + EX31_RS03455 0.68 -0.5
181,286 + EX31_RS03455 0.68 +0.7
181,287 - EX31_RS03455 0.68 -0.5
181,287 - EX31_RS03455 0.68 +0.3
181,287 - EX31_RS03455 0.68 -0.2
181,288 + EX31_RS03455 0.68 -0.7
181,288 + EX31_RS03455 0.68 +1.0
181,338 + EX31_RS03455 0.73 -0.4
181,453 + EX31_RS03455 0.83 +1.1
181,454 - EX31_RS03455 0.83 +0.2
181,458 + EX31_RS03455 0.84 +0.3

Or see this region's nucleotide sequence