Strain Fitness in Rahnella sp. WP5 around EX31_RS01100

Experiment: Ammonium chloride (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01090 and EX31_RS01095 overlap by 4 nucleotidesEX31_RS01095 and EX31_RS01100 are separated by 139 nucleotidesEX31_RS01100 and EX31_RS01105 are separated by 166 nucleotides EX31_RS01090: EX31_RS01090 - metal ABC transporter permease, at 237,057 to 237,911 _RS01090 EX31_RS01095: EX31_RS01095 - metal ABC transporter permease, at 237,908 to 238,762 _RS01095 EX31_RS01100: EX31_RS01100 - hypothetical protein, at 238,902 to 239,081 _RS01100 EX31_RS01105: EX31_RS01105 - tryptophan permease, at 239,248 to 240,492 _RS01105 Position (kb) 238 239 240Strain fitness (log2 ratio) -2 -1 0 1 2at 237.956 kb on - strandat 238.080 kb on + strand, within EX31_RS01095at 238.091 kb on + strand, within EX31_RS01095at 238.219 kb on + strand, within EX31_RS01095at 238.434 kb on + strand, within EX31_RS01095at 238.448 kb on + strand, within EX31_RS01095at 238.449 kb on - strand, within EX31_RS01095at 238.462 kb on + strand, within EX31_RS01095at 238.462 kb on + strand, within EX31_RS01095at 238.462 kb on + strand, within EX31_RS01095at 238.462 kb on + strand, within EX31_RS01095at 238.462 kb on + strand, within EX31_RS01095at 238.462 kb on + strand, within EX31_RS01095at 238.463 kb on - strand, within EX31_RS01095at 238.640 kb on + strand, within EX31_RS01095at 238.640 kb on + strand, within EX31_RS01095at 238.640 kb on + strand, within EX31_RS01095at 238.640 kb on + strand, within EX31_RS01095at 238.641 kb on - strand, within EX31_RS01095at 238.641 kb on - strand, within EX31_RS01095at 238.641 kb on - strand, within EX31_RS01095at 238.641 kb on - strand, within EX31_RS01095at 238.642 kb on + strand, within EX31_RS01095at 238.642 kb on + strand, within EX31_RS01095at 238.756 kb on + strandat 238.760 kb on + strandat 238.760 kb on + strandat 238.760 kb on + strandat 238.841 kb on - strandat 238.884 kb on + strandat 238.884 kb on + strandat 238.885 kb on - strandat 238.901 kb on + strandat 238.901 kb on + strandat 238.901 kb on + strandat 238.901 kb on + strandat 239.073 kb on - strandat 239.079 kb on + strandat 239.117 kb on + strandat 239.189 kb on - strandat 239.189 kb on - strandat 239.191 kb on - strandat 239.191 kb on - strandat 239.191 kb on - strandat 239.196 kb on - strandat 239.258 kb on - strandat 239.273 kb on - strandat 239.337 kb on + strandat 239.358 kb on - strandat 239.358 kb on - strandat 239.461 kb on - strand, within EX31_RS01105at 239.475 kb on - strand, within EX31_RS01105at 239.571 kb on - strand, within EX31_RS01105at 239.698 kb on - strand, within EX31_RS01105at 239.698 kb on - strand, within EX31_RS01105at 239.698 kb on - strand, within EX31_RS01105at 239.774 kb on + strand, within EX31_RS01105at 239.774 kb on + strand, within EX31_RS01105at 239.775 kb on - strand, within EX31_RS01105at 239.775 kb on - strand, within EX31_RS01105at 239.775 kb on - strand, within EX31_RS01105at 239.775 kb on - strand, within EX31_RS01105at 239.775 kb on - strand, within EX31_RS01105at 239.791 kb on - strand, within EX31_RS01105at 239.844 kb on - strand, within EX31_RS01105at 239.861 kb on - strand, within EX31_RS01105at 239.915 kb on + strand, within EX31_RS01105at 239.915 kb on + strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.916 kb on - strand, within EX31_RS01105at 239.924 kb on + strand, within EX31_RS01105at 239.924 kb on + strand, within EX31_RS01105at 239.924 kb on + strand, within EX31_RS01105at 239.924 kb on + strand, within EX31_RS01105at 239.924 kb on + strand, within EX31_RS01105at 239.925 kb on - strand, within EX31_RS01105at 239.980 kb on + strand, within EX31_RS01105at 239.981 kb on - strand, within EX31_RS01105at 239.981 kb on - strand, within EX31_RS01105at 239.981 kb on - strand, within EX31_RS01105

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking
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237,956 - +1.0
238,080 + EX31_RS01095 0.20 +1.0
238,091 + EX31_RS01095 0.21 +0.6
238,219 + EX31_RS01095 0.36 +0.4
238,434 + EX31_RS01095 0.62 -0.2
238,448 + EX31_RS01095 0.63 +2.2
238,449 - EX31_RS01095 0.63 -1.5
238,462 + EX31_RS01095 0.65 -0.0
238,462 + EX31_RS01095 0.65 +2.2
238,462 + EX31_RS01095 0.65 +0.1
238,462 + EX31_RS01095 0.65 -0.6
238,462 + EX31_RS01095 0.65 +1.4
238,462 + EX31_RS01095 0.65 -0.2
238,463 - EX31_RS01095 0.65 +1.0
238,640 + EX31_RS01095 0.86 +0.8
238,640 + EX31_RS01095 0.86 +0.2
238,640 + EX31_RS01095 0.86 +0.4
238,640 + EX31_RS01095 0.86 +0.2
238,641 - EX31_RS01095 0.86 +0.9
238,641 - EX31_RS01095 0.86 +0.0
238,641 - EX31_RS01095 0.86 +1.8
238,641 - EX31_RS01095 0.86 -0.6
238,642 + EX31_RS01095 0.86 +1.0
238,642 + EX31_RS01095 0.86 +0.3
238,756 + +1.3
238,760 + +0.3
238,760 + +0.3
238,760 + +0.2
238,841 - +0.6
238,884 + +0.6
238,884 + +0.2
238,885 - -0.1
238,901 + +1.2
238,901 + -0.3
238,901 + +2.4
238,901 + -0.3
239,073 - -1.8
239,079 + +0.2
239,117 + +1.2
239,189 - +0.6
239,189 - +1.0
239,191 - +0.4
239,191 - -0.1
239,191 - -0.4
239,196 - -0.8
239,258 - +0.9
239,273 - +1.6
239,337 + -0.4
239,358 - -0.8
239,358 - -0.1
239,461 - EX31_RS01105 0.17 -0.5
239,475 - EX31_RS01105 0.18 -0.3
239,571 - EX31_RS01105 0.26 -0.0
239,698 - EX31_RS01105 0.36 +1.2
239,698 - EX31_RS01105 0.36 +0.9
239,698 - EX31_RS01105 0.36 +0.5
239,774 + EX31_RS01105 0.42 +1.0
239,774 + EX31_RS01105 0.42 -1.1
239,775 - EX31_RS01105 0.42 -0.3
239,775 - EX31_RS01105 0.42 -0.2
239,775 - EX31_RS01105 0.42 +2.2
239,775 - EX31_RS01105 0.42 -0.7
239,775 - EX31_RS01105 0.42 -0.8
239,791 - EX31_RS01105 0.44 -2.0
239,844 - EX31_RS01105 0.48 -0.1
239,861 - EX31_RS01105 0.49 -0.1
239,915 + EX31_RS01105 0.54 +2.2
239,915 + EX31_RS01105 0.54 +1.6
239,916 - EX31_RS01105 0.54 +0.2
239,916 - EX31_RS01105 0.54 +1.4
239,916 - EX31_RS01105 0.54 +0.2
239,916 - EX31_RS01105 0.54 +2.4
239,916 - EX31_RS01105 0.54 +0.3
239,916 - EX31_RS01105 0.54 -0.7
239,916 - EX31_RS01105 0.54 +1.3
239,916 - EX31_RS01105 0.54 -1.4
239,916 - EX31_RS01105 0.54 +0.9
239,916 - EX31_RS01105 0.54 +1.2
239,916 - EX31_RS01105 0.54 -0.2
239,924 + EX31_RS01105 0.54 -1.0
239,924 + EX31_RS01105 0.54 -0.1
239,924 + EX31_RS01105 0.54 +1.0
239,924 + EX31_RS01105 0.54 +0.7
239,924 + EX31_RS01105 0.54 +1.5
239,925 - EX31_RS01105 0.54 -2.1
239,980 + EX31_RS01105 0.59 -0.4
239,981 - EX31_RS01105 0.59 +0.4
239,981 - EX31_RS01105 0.59 -1.3
239,981 - EX31_RS01105 0.59 -0.2

Or see this region's nucleotide sequence