Strain Fitness in Rahnella sp. WP5 around EX31_RS01080

Experiment: Ammonium chloride (N); RCH2 media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01070 and EX31_RS01075 are separated by 259 nucleotidesEX31_RS01075 and EX31_RS01080 are separated by 187 nucleotidesEX31_RS01080 and EX31_RS01085 overlap by 4 nucleotidesEX31_RS01085 and EX31_RS01090 overlap by 4 nucleotides EX31_RS01070: EX31_RS01070 - hypothetical protein, at 234,105 to 234,452 _RS01070 EX31_RS01075: EX31_RS01075 - manganese-binding transcriptional regulator MntR, at 234,712 to 235,155 _RS01075 EX31_RS01080: EX31_RS01080 - metal ABC transporter substrate-binding protein, at 235,343 to 236,284 _RS01080 EX31_RS01085: EX31_RS01085 - ATP-binding cassette domain-containing protein, at 236,281 to 237,060 _RS01085 EX31_RS01090: EX31_RS01090 - metal ABC transporter permease, at 237,057 to 237,911 _RS01090 Position (kb) 235 236 237Strain fitness (log2 ratio) -2 -1 0 1 2at 234.346 kb on + strand, within EX31_RS01070at 234.346 kb on + strand, within EX31_RS01070at 234.347 kb on - strand, within EX31_RS01070at 234.349 kb on + strand, within EX31_RS01070at 234.361 kb on + strand, within EX31_RS01070at 234.362 kb on - strand, within EX31_RS01070at 234.379 kb on + strand, within EX31_RS01070at 234.380 kb on - strand, within EX31_RS01070at 234.452 kb on + strandat 234.453 kb on - strandat 234.493 kb on + strandat 234.493 kb on + strandat 234.494 kb on - strandat 234.522 kb on - strandat 234.708 kb on + strandat 234.828 kb on + strand, within EX31_RS01075at 234.841 kb on + strand, within EX31_RS01075at 234.842 kb on - strand, within EX31_RS01075at 234.916 kb on + strand, within EX31_RS01075at 234.970 kb on - strand, within EX31_RS01075at 235.034 kb on - strand, within EX31_RS01075at 235.034 kb on - strand, within EX31_RS01075at 235.034 kb on - strand, within EX31_RS01075at 235.034 kb on - strand, within EX31_RS01075at 235.034 kb on - strand, within EX31_RS01075at 235.034 kb on - strand, within EX31_RS01075at 235.056 kb on - strand, within EX31_RS01075at 235.056 kb on - strand, within EX31_RS01075at 235.056 kb on - strand, within EX31_RS01075at 235.056 kb on - strand, within EX31_RS01075at 235.067 kb on - strand, within EX31_RS01075at 235.067 kb on - strand, within EX31_RS01075at 235.097 kb on - strand, within EX31_RS01075at 235.130 kb on - strandat 235.157 kb on - strandat 235.187 kb on + strandat 235.200 kb on + strandat 235.201 kb on - strandat 235.224 kb on + strandat 235.224 kb on + strandat 235.224 kb on + strandat 235.225 kb on - strandat 235.233 kb on + strandat 235.233 kb on + strandat 235.233 kb on + strandat 235.233 kb on + strandat 235.234 kb on - strandat 235.234 kb on - strandat 235.234 kb on - strandat 235.234 kb on - strandat 235.234 kb on - strandat 235.244 kb on - strandat 235.280 kb on + strandat 235.290 kb on + strandat 235.292 kb on + strandat 235.292 kb on + strandat 235.303 kb on + strandat 235.371 kb on + strandat 235.379 kb on + strandat 235.543 kb on - strand, within EX31_RS01080at 235.645 kb on + strand, within EX31_RS01080at 235.732 kb on + strand, within EX31_RS01080at 235.748 kb on + strand, within EX31_RS01080at 235.748 kb on + strand, within EX31_RS01080at 235.748 kb on + strand, within EX31_RS01080at 235.748 kb on + strand, within EX31_RS01080at 235.748 kb on + strand, within EX31_RS01080at 235.749 kb on - strand, within EX31_RS01080at 235.802 kb on + strand, within EX31_RS01080at 235.802 kb on + strand, within EX31_RS01080at 235.835 kb on + strand, within EX31_RS01080at 235.860 kb on - strand, within EX31_RS01080at 235.874 kb on - strand, within EX31_RS01080at 235.982 kb on + strand, within EX31_RS01080at 235.997 kb on + strand, within EX31_RS01080at 236.015 kb on + strand, within EX31_RS01080at 236.015 kb on + strand, within EX31_RS01080at 236.015 kb on + strand, within EX31_RS01080at 236.186 kb on + strand, within EX31_RS01080at 236.186 kb on + strand, within EX31_RS01080at 236.186 kb on + strand, within EX31_RS01080at 236.186 kb on + strand, within EX31_RS01080at 236.228 kb on + strandat 236.228 kb on + strandat 236.228 kb on + strandat 236.228 kb on + strandat 236.229 kb on - strandat 236.316 kb on + strandat 236.316 kb on + strandat 236.329 kb on + strandat 236.329 kb on + strandat 236.329 kb on + strandat 236.329 kb on + strandat 236.329 kb on + strandat 236.329 kb on + strandat 236.418 kb on + strand, within EX31_RS01085at 236.433 kb on + strand, within EX31_RS01085at 236.433 kb on + strand, within EX31_RS01085at 236.527 kb on + strand, within EX31_RS01085at 236.527 kb on + strand, within EX31_RS01085at 236.528 kb on - strand, within EX31_RS01085at 236.641 kb on - strand, within EX31_RS01085at 236.965 kb on - strand, within EX31_RS01085at 237.012 kb on + strandat 237.012 kb on + strandat 237.088 kb on - strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.093 kb on + strandat 237.094 kb on - strandat 237.095 kb on + strandat 237.095 kb on + strandat 237.096 kb on - strandat 237.276 kb on - strand, within EX31_RS01090

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; no shaking
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234,346 + EX31_RS01070 0.69 -0.4
234,346 + EX31_RS01070 0.69 +0.3
234,347 - EX31_RS01070 0.70 -1.4
234,349 + EX31_RS01070 0.70 +1.6
234,361 + EX31_RS01070 0.74 -1.6
234,362 - EX31_RS01070 0.74 +0.2
234,379 + EX31_RS01070 0.79 +0.1
234,380 - EX31_RS01070 0.79 +1.4
234,452 + -1.2
234,453 - -0.2
234,493 + +0.5
234,493 + +0.3
234,494 - +2.5
234,522 - -1.7
234,708 + -0.1
234,828 + EX31_RS01075 0.26 +0.1
234,841 + EX31_RS01075 0.29 -1.3
234,842 - EX31_RS01075 0.29 -2.0
234,916 + EX31_RS01075 0.46 -0.4
234,970 - EX31_RS01075 0.58 -2.2
235,034 - EX31_RS01075 0.73 +0.7
235,034 - EX31_RS01075 0.73 -0.6
235,034 - EX31_RS01075 0.73 -1.2
235,034 - EX31_RS01075 0.73 +1.4
235,034 - EX31_RS01075 0.73 +0.3
235,034 - EX31_RS01075 0.73 -0.4
235,056 - EX31_RS01075 0.77 -1.7
235,056 - EX31_RS01075 0.77 -0.7
235,056 - EX31_RS01075 0.77 +2.2
235,056 - EX31_RS01075 0.77 -0.5
235,067 - EX31_RS01075 0.80 +0.1
235,067 - EX31_RS01075 0.80 -0.8
235,097 - EX31_RS01075 0.87 -0.4
235,130 - -0.2
235,157 - -1.2
235,187 + +0.6
235,200 + +1.2
235,201 - -0.5
235,224 + +0.3
235,224 + -0.2
235,224 + +0.1
235,225 - -1.3
235,233 + +0.7
235,233 + -0.4
235,233 + +0.5
235,233 + -0.7
235,234 - +0.8
235,234 - +0.2
235,234 - -0.6
235,234 - +0.6
235,234 - -0.1
235,244 - +0.2
235,280 + -0.7
235,290 + +0.2
235,292 + -0.8
235,292 + +1.5
235,303 + -0.7
235,371 + +0.2
235,379 + +0.2
235,543 - EX31_RS01080 0.21 -0.4
235,645 + EX31_RS01080 0.32 -1.5
235,732 + EX31_RS01080 0.41 -0.7
235,748 + EX31_RS01080 0.43 +0.3
235,748 + EX31_RS01080 0.43 +1.0
235,748 + EX31_RS01080 0.43 +0.8
235,748 + EX31_RS01080 0.43 -1.6
235,748 + EX31_RS01080 0.43 +0.1
235,749 - EX31_RS01080 0.43 +1.8
235,802 + EX31_RS01080 0.49 +0.2
235,802 + EX31_RS01080 0.49 +0.2
235,835 + EX31_RS01080 0.52 -1.0
235,860 - EX31_RS01080 0.55 +1.7
235,874 - EX31_RS01080 0.56 -0.7
235,982 + EX31_RS01080 0.68 -0.2
235,997 + EX31_RS01080 0.69 -1.1
236,015 + EX31_RS01080 0.71 -2.7
236,015 + EX31_RS01080 0.71 +0.1
236,015 + EX31_RS01080 0.71 +0.0
236,186 + EX31_RS01080 0.89 -1.4
236,186 + EX31_RS01080 0.89 -0.4
236,186 + EX31_RS01080 0.89 -0.8
236,186 + EX31_RS01080 0.89 -0.0
236,228 + +0.6
236,228 + +0.9
236,228 + -2.2
236,228 + +0.7
236,229 - +2.2
236,316 + +1.0
236,316 + +0.8
236,329 + -1.2
236,329 + +0.1
236,329 + -0.2
236,329 + +0.3
236,329 + +0.7
236,329 + +2.6
236,418 + EX31_RS01085 0.18 +1.2
236,433 + EX31_RS01085 0.19 +0.2
236,433 + EX31_RS01085 0.19 +1.1
236,527 + EX31_RS01085 0.32 +0.4
236,527 + EX31_RS01085 0.32 +2.2
236,528 - EX31_RS01085 0.32 -1.8
236,641 - EX31_RS01085 0.46 +1.0
236,965 - EX31_RS01085 0.88 -1.2
237,012 + +0.6
237,012 + -0.9
237,088 - +1.5
237,093 + -0.4
237,093 + -0.1
237,093 + -1.7
237,093 + +0.8
237,093 + -1.4
237,093 + +1.2
237,093 + +0.6
237,093 + +0.1
237,093 + -0.5
237,093 + -0.4
237,093 + +0.5
237,093 + +0.2
237,093 + -1.2
237,093 + -1.8
237,093 + +0.5
237,093 + +0.2
237,093 + +0.4
237,093 + +1.7
237,093 + +0.4
237,093 + -1.4
237,094 - -0.8
237,095 + -0.4
237,095 + +1.0
237,096 - +1.2
237,276 - EX31_RS01090 0.26 +1.2

Or see this region's nucleotide sequence