Experiment: L-aspartic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02596 and CCNA_02597 are separated by 171 nucleotides CCNA_02597 and CCNA_02598 are separated by 79 nucleotides CCNA_02598 and CCNA_02599 overlap by 49 nucleotides CCNA_02599 and CCNA_02600 are separated by 47 nucleotides
CCNA_02596: CCNA_02596 - SSU ribosomal protein S4P, at 2,743,723 to 2,744,340
_02596
CCNA_02597: CCNA_02597 - hypothetical protein, at 2,744,512 to 2,744,892
_02597
CCNA_02598: CCNA_02598 - toxin protein relE-2, at 2,744,972 to 2,745,274
_02598
CCNA_02599: CCNA_02599 - antitoxin protein relB-2, at 2,745,226 to 2,745,402
_02599
CCNA_02600: CCNA_02600 - S-formylglutathione hydrolase, at 2,745,450 to 2,746,283
_02600
Position (kb)
2744
2745
2746 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2744.471 kb on - strand at 2744.471 kb on - strand at 2744.503 kb on + strand at 2744.503 kb on + strand at 2744.511 kb on - strand at 2744.554 kb on + strand, within CCNA_02597 at 2744.574 kb on + strand, within CCNA_02597 at 2744.592 kb on - strand, within CCNA_02597 at 2744.597 kb on - strand, within CCNA_02597 at 2744.610 kb on - strand, within CCNA_02597 at 2744.661 kb on - strand, within CCNA_02597 at 2744.661 kb on - strand, within CCNA_02597 at 2744.661 kb on - strand, within CCNA_02597 at 2744.700 kb on - strand, within CCNA_02597 at 2744.735 kb on - strand, within CCNA_02597 at 2744.735 kb on - strand, within CCNA_02597 at 2744.756 kb on + strand, within CCNA_02597 at 2744.756 kb on + strand, within CCNA_02597 at 2744.756 kb on + strand, within CCNA_02597 at 2744.764 kb on - strand, within CCNA_02597 at 2744.764 kb on - strand, within CCNA_02597 at 2744.785 kb on + strand, within CCNA_02597 at 2744.793 kb on - strand, within CCNA_02597 at 2744.793 kb on - strand, within CCNA_02597 at 2744.809 kb on - strand, within CCNA_02597 at 2744.815 kb on - strand, within CCNA_02597 at 2744.815 kb on - strand, within CCNA_02597 at 2744.839 kb on + strand, within CCNA_02597 at 2744.839 kb on + strand, within CCNA_02597 at 2744.848 kb on + strand, within CCNA_02597 at 2744.853 kb on + strand, within CCNA_02597 at 2744.853 kb on + strand, within CCNA_02597 at 2744.859 kb on + strand at 2744.905 kb on - strand at 2744.925 kb on - strand at 2745.003 kb on + strand, within CCNA_02598 at 2745.007 kb on + strand, within CCNA_02598 at 2745.025 kb on + strand, within CCNA_02598 at 2745.052 kb on - strand, within CCNA_02598 at 2745.113 kb on + strand, within CCNA_02598 at 2745.113 kb on + strand, within CCNA_02598 at 2745.114 kb on - strand, within CCNA_02598 at 2745.126 kb on + strand, within CCNA_02598 at 2745.126 kb on + strand, within CCNA_02598 at 2745.134 kb on + strand, within CCNA_02598 at 2745.134 kb on - strand, within CCNA_02598 at 2745.134 kb on - strand, within CCNA_02598 at 2745.134 kb on - strand, within CCNA_02598 at 2745.149 kb on - strand, within CCNA_02598 at 2745.172 kb on + strand, within CCNA_02598 at 2745.180 kb on - strand, within CCNA_02598 at 2745.227 kb on - strand at 2745.274 kb on + strand at 2745.286 kb on + strand, within CCNA_02599 at 2745.357 kb on + strand, within CCNA_02599 at 2745.410 kb on + strand at 2745.410 kb on + strand at 2745.430 kb on - strand at 2745.457 kb on - strand at 2745.463 kb on - strand at 2745.515 kb on + strand at 2745.515 kb on + strand at 2745.515 kb on + strand at 2745.515 kb on + strand at 2745.515 kb on + strand at 2745.515 kb on + strand at 2745.523 kb on - strand at 2745.523 kb on - strand at 2745.523 kb on - strand at 2745.610 kb on + strand, within CCNA_02600 at 2745.616 kb on + strand, within CCNA_02600 at 2745.617 kb on - strand, within CCNA_02600 at 2745.620 kb on + strand, within CCNA_02600 at 2745.621 kb on + strand, within CCNA_02600 at 2745.628 kb on - strand, within CCNA_02600 at 2745.629 kb on - strand, within CCNA_02600 at 2745.663 kb on - strand, within CCNA_02600 at 2745.727 kb on - strand, within CCNA_02600 at 2745.753 kb on + strand, within CCNA_02600 at 2745.761 kb on - strand, within CCNA_02600 at 2745.761 kb on - strand, within CCNA_02600 at 2745.761 kb on - strand, within CCNA_02600 at 2745.799 kb on + strand, within CCNA_02600 at 2745.800 kb on + strand, within CCNA_02600 at 2745.813 kb on - strand at 2745.822 kb on + strand, within CCNA_02600 at 2745.830 kb on - strand, within CCNA_02600 at 2745.909 kb on - strand, within CCNA_02600 at 2745.960 kb on - strand, within CCNA_02600 at 2746.024 kb on + strand, within CCNA_02600 at 2746.051 kb on - strand, within CCNA_02600 at 2746.091 kb on + strand, within CCNA_02600 at 2746.113 kb on - strand, within CCNA_02600 at 2746.120 kb on + strand, within CCNA_02600 at 2746.120 kb on + strand, within CCNA_02600 at 2746.120 kb on + strand, within CCNA_02600 at 2746.120 kb on + strand, within CCNA_02600 at 2746.125 kb on + strand, within CCNA_02600 at 2746.125 kb on + strand, within CCNA_02600 at 2746.125 kb on + strand, within CCNA_02600 at 2746.128 kb on - strand, within CCNA_02600 at 2746.128 kb on - strand, within CCNA_02600 at 2746.133 kb on - strand, within CCNA_02600 at 2746.184 kb on - strand, within CCNA_02600 at 2746.238 kb on + strand at 2746.246 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-aspartic (N) remove 2,744,471 - +2.2 2,744,471 - +0.3 2,744,503 + -0.2 2,744,503 + +0.7 2,744,511 - +1.9 2,744,554 + CCNA_02597 0.11 -0.2 2,744,574 + CCNA_02597 0.16 -0.5 2,744,592 - CCNA_02597 0.21 +1.3 2,744,597 - CCNA_02597 0.22 +1.4 2,744,610 - CCNA_02597 0.26 +1.4 2,744,661 - CCNA_02597 0.39 +1.2 2,744,661 - CCNA_02597 0.39 +0.2 2,744,661 - CCNA_02597 0.39 +0.3 2,744,700 - CCNA_02597 0.49 +0.6 2,744,735 - CCNA_02597 0.59 +0.8 2,744,735 - CCNA_02597 0.59 +2.5 2,744,756 + CCNA_02597 0.64 +0.3 2,744,756 + CCNA_02597 0.64 -0.5 2,744,756 + CCNA_02597 0.64 +1.3 2,744,764 - CCNA_02597 0.66 +2.3 2,744,764 - CCNA_02597 0.66 +1.9 2,744,785 + CCNA_02597 0.72 -0.9 2,744,793 - CCNA_02597 0.74 +0.3 2,744,793 - CCNA_02597 0.74 +0.9 2,744,809 - CCNA_02597 0.78 -0.5 2,744,815 - CCNA_02597 0.80 +1.0 2,744,815 - CCNA_02597 0.80 +1.2 2,744,839 + CCNA_02597 0.86 -0.6 2,744,839 + CCNA_02597 0.86 +1.0 2,744,848 + CCNA_02597 0.88 +0.2 2,744,853 + CCNA_02597 0.90 -0.6 2,744,853 + CCNA_02597 0.90 +1.3 2,744,859 + +0.8 2,744,905 - +0.2 2,744,925 - +0.9 2,745,003 + CCNA_02598 0.10 -1.7 2,745,007 + CCNA_02598 0.12 +0.2 2,745,025 + CCNA_02598 0.17 -1.8 2,745,052 - CCNA_02598 0.26 +3.5 2,745,113 + CCNA_02598 0.47 -1.1 2,745,113 + CCNA_02598 0.47 -0.5 2,745,114 - CCNA_02598 0.47 -1.9 2,745,126 + CCNA_02598 0.51 -0.7 2,745,126 + CCNA_02598 0.51 -1.3 2,745,134 + CCNA_02598 0.53 +0.8 2,745,134 - CCNA_02598 0.53 -1.2 2,745,134 - CCNA_02598 0.53 +0.9 2,745,134 - CCNA_02598 0.53 +0.2 2,745,149 - CCNA_02598 0.58 -0.3 2,745,172 + CCNA_02598 0.66 -0.8 2,745,180 - CCNA_02598 0.69 -2.6 2,745,227 - +2.5 2,745,274 + -1.8 2,745,286 + CCNA_02599 0.34 -1.4 2,745,357 + CCNA_02599 0.74 +0.2 2,745,410 + -0.8 2,745,410 + -1.6 2,745,430 - +2.2 2,745,457 - -0.3 2,745,463 - +0.4 2,745,515 + +0.0 2,745,515 + -0.8 2,745,515 + -1.3 2,745,515 + -0.3 2,745,515 + -2.5 2,745,515 + +0.6 2,745,523 - +2.2 2,745,523 - +0.5 2,745,523 - +0.7 2,745,610 + CCNA_02600 0.19 -2.1 2,745,616 + CCNA_02600 0.20 -1.1 2,745,617 - CCNA_02600 0.20 +0.6 2,745,620 + CCNA_02600 0.20 -1.2 2,745,621 + CCNA_02600 0.21 -0.6 2,745,628 - CCNA_02600 0.21 -1.0 2,745,629 - CCNA_02600 0.21 +0.7 2,745,663 - CCNA_02600 0.26 -0.9 2,745,727 - CCNA_02600 0.33 +0.1 2,745,753 + CCNA_02600 0.36 +0.2 2,745,761 - CCNA_02600 0.37 +1.0 2,745,761 - CCNA_02600 0.37 -0.1 2,745,761 - CCNA_02600 0.37 +0.7 2,745,799 + CCNA_02600 0.42 +1.0 2,745,800 + CCNA_02600 0.42 +2.3 2,745,813 - +1.9 2,745,822 + CCNA_02600 0.45 -0.0 2,745,830 - CCNA_02600 0.46 +0.4 2,745,909 - CCNA_02600 0.55 +0.3 2,745,960 - CCNA_02600 0.61 -0.7 2,746,024 + CCNA_02600 0.69 -0.5 2,746,051 - CCNA_02600 0.72 +0.4 2,746,091 + CCNA_02600 0.77 +1.5 2,746,113 - CCNA_02600 0.79 +1.4 2,746,120 + CCNA_02600 0.80 -0.7 2,746,120 + CCNA_02600 0.80 +0.9 2,746,120 + CCNA_02600 0.80 +0.4 2,746,120 + CCNA_02600 0.80 +1.1 2,746,125 + CCNA_02600 0.81 -0.2 2,746,125 + CCNA_02600 0.81 -1.0 2,746,125 + CCNA_02600 0.81 +2.2 2,746,128 - CCNA_02600 0.81 -0.9 2,746,128 - CCNA_02600 0.81 +0.2 2,746,133 - CCNA_02600 0.82 +2.1 2,746,184 - CCNA_02600 0.88 +0.7 2,746,238 + -1.0 2,746,246 - +0.2
Or see this region's nucleotide sequence