Experiment: L-aspartic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01744 and CCNA_01745 are separated by 71 nucleotides CCNA_01745 and CCNA_01746 are separated by 167 nucleotides
CCNA_01744: CCNA_01744 - AraC-family transcriptional regulator, at 1,872,325 to 1,873,437
_01744
CCNA_01745: CCNA_01745 - thioredoxin peroxidase, at 1,873,509 to 1,874,042
_01745
CCNA_01746: CCNA_01746 - malonyl-CoA-(acyl-carrier-protein) transacylase FabD, at 1,874,210 to 1,875,154
_01746
Position (kb)
1873
1874
1875 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1872.516 kb on + strand, within CCNA_01744 at 1872.524 kb on - strand, within CCNA_01744 at 1872.529 kb on - strand, within CCNA_01744 at 1872.544 kb on - strand, within CCNA_01744 at 1872.588 kb on + strand, within CCNA_01744 at 1872.607 kb on - strand, within CCNA_01744 at 1872.614 kb on + strand, within CCNA_01744 at 1872.622 kb on + strand, within CCNA_01744 at 1872.622 kb on + strand, within CCNA_01744 at 1872.624 kb on + strand, within CCNA_01744 at 1872.630 kb on - strand, within CCNA_01744 at 1872.632 kb on - strand, within CCNA_01744 at 1872.645 kb on - strand, within CCNA_01744 at 1872.684 kb on - strand, within CCNA_01744 at 1872.715 kb on + strand, within CCNA_01744 at 1872.747 kb on - strand, within CCNA_01744 at 1872.752 kb on - strand, within CCNA_01744 at 1872.796 kb on + strand, within CCNA_01744 at 1872.804 kb on - strand, within CCNA_01744 at 1872.805 kb on - strand, within CCNA_01744 at 1872.805 kb on - strand, within CCNA_01744 at 1872.805 kb on - strand, within CCNA_01744 at 1872.823 kb on + strand, within CCNA_01744 at 1872.829 kb on + strand, within CCNA_01744 at 1872.829 kb on + strand, within CCNA_01744 at 1872.865 kb on - strand, within CCNA_01744 at 1872.886 kb on - strand, within CCNA_01744 at 1872.895 kb on + strand, within CCNA_01744 at 1872.903 kb on - strand, within CCNA_01744 at 1872.903 kb on - strand, within CCNA_01744 at 1872.903 kb on - strand, within CCNA_01744 at 1872.913 kb on + strand, within CCNA_01744 at 1872.934 kb on + strand, within CCNA_01744 at 1872.934 kb on + strand, within CCNA_01744 at 1872.942 kb on - strand, within CCNA_01744 at 1872.942 kb on - strand, within CCNA_01744 at 1872.942 kb on - strand, within CCNA_01744 at 1873.021 kb on + strand, within CCNA_01744 at 1873.026 kb on + strand, within CCNA_01744 at 1873.026 kb on + strand, within CCNA_01744 at 1873.034 kb on - strand, within CCNA_01744 at 1873.034 kb on - strand, within CCNA_01744 at 1873.070 kb on - strand, within CCNA_01744 at 1873.081 kb on - strand, within CCNA_01744 at 1873.088 kb on + strand, within CCNA_01744 at 1873.088 kb on + strand, within CCNA_01744 at 1873.096 kb on - strand, within CCNA_01744 at 1873.116 kb on + strand, within CCNA_01744 at 1873.127 kb on + strand, within CCNA_01744 at 1873.135 kb on + strand, within CCNA_01744 at 1873.143 kb on - strand, within CCNA_01744 at 1873.175 kb on + strand, within CCNA_01744 at 1873.193 kb on - strand, within CCNA_01744 at 1873.193 kb on - strand, within CCNA_01744 at 1873.198 kb on - strand, within CCNA_01744 at 1873.198 kb on - strand, within CCNA_01744 at 1873.199 kb on + strand, within CCNA_01744 at 1873.204 kb on + strand, within CCNA_01744 at 1873.237 kb on + strand, within CCNA_01744 at 1873.237 kb on + strand, within CCNA_01744 at 1873.237 kb on + strand, within CCNA_01744 at 1873.240 kb on - strand, within CCNA_01744 at 1873.245 kb on - strand, within CCNA_01744 at 1873.245 kb on - strand, within CCNA_01744 at 1873.245 kb on - strand, within CCNA_01744 at 1873.420 kb on - strand at 1873.440 kb on - strand at 1873.441 kb on - strand at 1873.466 kb on + strand at 1873.473 kb on - strand at 1873.474 kb on - strand at 1873.481 kb on + strand at 1873.504 kb on + strand at 1873.512 kb on + strand at 1873.529 kb on + strand at 1873.556 kb on - strand at 1873.587 kb on - strand, within CCNA_01745 at 1873.624 kb on - strand, within CCNA_01745 at 1873.644 kb on + strand, within CCNA_01745 at 1873.663 kb on - strand, within CCNA_01745 at 1873.664 kb on - strand, within CCNA_01745 at 1873.669 kb on + strand, within CCNA_01745 at 1873.669 kb on + strand, within CCNA_01745 at 1873.677 kb on - strand, within CCNA_01745 at 1873.677 kb on - strand, within CCNA_01745 at 1873.677 kb on - strand, within CCNA_01745 at 1873.677 kb on - strand, within CCNA_01745 at 1873.677 kb on - strand, within CCNA_01745 at 1873.677 kb on - strand, within CCNA_01745 at 1873.677 kb on - strand, within CCNA_01745 at 1873.682 kb on - strand, within CCNA_01745 at 1873.716 kb on + strand, within CCNA_01745 at 1873.729 kb on - strand, within CCNA_01745 at 1873.729 kb on - strand, within CCNA_01745 at 1873.743 kb on - strand, within CCNA_01745 at 1873.744 kb on - strand, within CCNA_01745 at 1873.744 kb on - strand, within CCNA_01745 at 1873.775 kb on + strand, within CCNA_01745 at 1873.866 kb on + strand, within CCNA_01745 at 1873.874 kb on - strand, within CCNA_01745 at 1873.894 kb on + strand, within CCNA_01745 at 1873.911 kb on + strand, within CCNA_01745 at 1873.919 kb on - strand, within CCNA_01745 at 1873.950 kb on - strand, within CCNA_01745 at 1873.977 kb on - strand, within CCNA_01745 at 1874.070 kb on + strand at 1874.078 kb on - strand at 1874.078 kb on - strand at 1874.080 kb on - strand at 1874.106 kb on - strand at 1874.133 kb on + strand at 1874.141 kb on - strand at 1874.141 kb on - strand at 1874.161 kb on + strand at 1874.162 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-aspartic (N) remove 1,872,516 + CCNA_01744 0.17 +0.9 1,872,524 - CCNA_01744 0.18 +0.2 1,872,529 - CCNA_01744 0.18 +0.3 1,872,544 - CCNA_01744 0.20 -1.4 1,872,588 + CCNA_01744 0.24 +0.7 1,872,607 - CCNA_01744 0.25 -1.1 1,872,614 + CCNA_01744 0.26 -0.4 1,872,622 + CCNA_01744 0.27 -0.7 1,872,622 + CCNA_01744 0.27 -1.4 1,872,624 + CCNA_01744 0.27 -1.3 1,872,630 - CCNA_01744 0.27 -0.3 1,872,632 - CCNA_01744 0.28 -2.2 1,872,645 - CCNA_01744 0.29 -0.5 1,872,684 - CCNA_01744 0.32 -0.8 1,872,715 + CCNA_01744 0.35 +1.4 1,872,747 - CCNA_01744 0.38 -0.0 1,872,752 - CCNA_01744 0.38 +0.5 1,872,796 + CCNA_01744 0.42 -1.4 1,872,804 - CCNA_01744 0.43 -0.5 1,872,805 - CCNA_01744 0.43 -1.1 1,872,805 - CCNA_01744 0.43 +0.5 1,872,805 - CCNA_01744 0.43 -0.6 1,872,823 + CCNA_01744 0.45 -0.3 1,872,829 + CCNA_01744 0.45 +0.3 1,872,829 + CCNA_01744 0.45 -1.4 1,872,865 - CCNA_01744 0.49 +0.4 1,872,886 - CCNA_01744 0.50 +0.6 1,872,895 + CCNA_01744 0.51 -2.3 1,872,903 - CCNA_01744 0.52 +0.7 1,872,903 - CCNA_01744 0.52 -0.5 1,872,903 - CCNA_01744 0.52 +1.1 1,872,913 + CCNA_01744 0.53 -0.9 1,872,934 + CCNA_01744 0.55 -1.6 1,872,934 + CCNA_01744 0.55 +0.3 1,872,942 - CCNA_01744 0.55 +0.7 1,872,942 - CCNA_01744 0.55 +0.4 1,872,942 - CCNA_01744 0.55 -0.1 1,873,021 + CCNA_01744 0.63 +0.2 1,873,026 + CCNA_01744 0.63 +0.5 1,873,026 + CCNA_01744 0.63 -0.9 1,873,034 - CCNA_01744 0.64 +2.2 1,873,034 - CCNA_01744 0.64 +2.1 1,873,070 - CCNA_01744 0.67 -0.7 1,873,081 - CCNA_01744 0.68 +0.6 1,873,088 + CCNA_01744 0.69 -0.2 1,873,088 + CCNA_01744 0.69 +1.6 1,873,096 - CCNA_01744 0.69 -0.2 1,873,116 + CCNA_01744 0.71 -0.3 1,873,127 + CCNA_01744 0.72 -0.1 1,873,135 + CCNA_01744 0.73 +0.2 1,873,143 - CCNA_01744 0.73 +0.4 1,873,175 + CCNA_01744 0.76 +1.0 1,873,193 - CCNA_01744 0.78 +2.3 1,873,193 - CCNA_01744 0.78 +0.8 1,873,198 - CCNA_01744 0.78 +0.5 1,873,198 - CCNA_01744 0.78 +0.8 1,873,199 + CCNA_01744 0.79 -0.5 1,873,204 + CCNA_01744 0.79 -0.1 1,873,237 + CCNA_01744 0.82 +1.5 1,873,237 + CCNA_01744 0.82 -0.2 1,873,237 + CCNA_01744 0.82 -1.0 1,873,240 - CCNA_01744 0.82 +1.3 1,873,245 - CCNA_01744 0.83 +1.9 1,873,245 - CCNA_01744 0.83 -1.0 1,873,245 - CCNA_01744 0.83 -0.7 1,873,420 - -0.1 1,873,440 - +1.0 1,873,441 - +0.7 1,873,466 + +1.1 1,873,473 - +0.7 1,873,474 - +0.8 1,873,481 + +0.0 1,873,504 + -1.4 1,873,512 + -1.1 1,873,529 + -0.8 1,873,556 - +1.5 1,873,587 - CCNA_01745 0.15 +1.4 1,873,624 - CCNA_01745 0.22 +0.8 1,873,644 + CCNA_01745 0.25 -0.5 1,873,663 - CCNA_01745 0.29 +1.6 1,873,664 - CCNA_01745 0.29 +1.5 1,873,669 + CCNA_01745 0.30 -1.9 1,873,669 + CCNA_01745 0.30 -0.6 1,873,677 - CCNA_01745 0.31 +0.7 1,873,677 - CCNA_01745 0.31 +1.5 1,873,677 - CCNA_01745 0.31 +1.9 1,873,677 - CCNA_01745 0.31 +1.3 1,873,677 - CCNA_01745 0.31 +1.9 1,873,677 - CCNA_01745 0.31 +0.8 1,873,677 - CCNA_01745 0.31 +2.0 1,873,682 - CCNA_01745 0.32 +1.0 1,873,716 + CCNA_01745 0.39 -1.8 1,873,729 - CCNA_01745 0.41 +2.1 1,873,729 - CCNA_01745 0.41 +1.4 1,873,743 - CCNA_01745 0.44 +0.4 1,873,744 - CCNA_01745 0.44 +1.5 1,873,744 - CCNA_01745 0.44 +1.3 1,873,775 + CCNA_01745 0.50 -0.5 1,873,866 + CCNA_01745 0.67 +0.3 1,873,874 - CCNA_01745 0.68 +0.3 1,873,894 + CCNA_01745 0.72 +0.5 1,873,911 + CCNA_01745 0.75 -0.7 1,873,919 - CCNA_01745 0.77 +0.0 1,873,950 - CCNA_01745 0.83 +2.8 1,873,977 - CCNA_01745 0.88 +1.5 1,874,070 + +0.4 1,874,078 - +0.1 1,874,078 - +0.9 1,874,080 - -0.8 1,874,106 - -0.0 1,874,133 + -0.2 1,874,141 - -0.2 1,874,141 - +1.5 1,874,161 + -1.1 1,874,162 + +0.3
Or see this region's nucleotide sequence