Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS14225

Experiment: reconstituted MRS with Amylopectin from maize 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS14220 and BBR_RS14225 are separated by 71 nucleotidesBBR_RS14225 and BBR_RS14230 are separated by 57 nucleotides BBR_RS14220: BBR_RS14220 - phosphomannomutase, at 965,609 to 966,412 _RS14220 BBR_RS14225: BBR_RS14225 - ComF family protein, at 966,484 to 967,158 _RS14225 BBR_RS14230: BBR_RS14230 - HAMP domain-containing histidine kinase, at 967,216 to 968,289 _RS14230 Position (kb) 966 967 968Strain fitness (log2 ratio) -3 -2 -1 0 1at 965.503 kb on + strandat 965.570 kb on - strandat 965.589 kb on - strandat 965.620 kb on + strandat 965.673 kb on + strandat 965.678 kb on + strandat 965.681 kb on - strandat 965.700 kb on + strand, within BBR_RS14220at 965.700 kb on + strand, within BBR_RS14220at 965.703 kb on - strand, within BBR_RS14220at 965.708 kb on - strand, within BBR_RS14220at 965.710 kb on + strand, within BBR_RS14220at 965.786 kb on + strand, within BBR_RS14220at 965.810 kb on - strand, within BBR_RS14220at 965.834 kb on - strand, within BBR_RS14220at 965.862 kb on - strand, within BBR_RS14220at 965.865 kb on + strand, within BBR_RS14220at 965.883 kb on + strand, within BBR_RS14220at 965.891 kb on + strand, within BBR_RS14220at 965.897 kb on - strand, within BBR_RS14220at 965.919 kb on - strand, within BBR_RS14220at 965.961 kb on + strand, within BBR_RS14220at 965.984 kb on - strand, within BBR_RS14220at 966.096 kb on - strand, within BBR_RS14220at 966.113 kb on - strand, within BBR_RS14220at 966.215 kb on + strand, within BBR_RS14220at 966.222 kb on - strand, within BBR_RS14220at 966.222 kb on - strand, within BBR_RS14220at 966.222 kb on - strand, within BBR_RS14220at 966.234 kb on - strand, within BBR_RS14220at 966.281 kb on + strand, within BBR_RS14220at 966.299 kb on - strand, within BBR_RS14220at 966.367 kb on + strandat 966.367 kb on + strandat 966.386 kb on - strandat 966.391 kb on + strandat 966.409 kb on - strandat 966.509 kb on - strandat 966.528 kb on - strandat 966.530 kb on + strandat 966.546 kb on - strandat 966.546 kb on - strandat 966.551 kb on - strandat 966.551 kb on - strandat 966.627 kb on + strand, within BBR_RS14225at 966.635 kb on - strand, within BBR_RS14225at 966.635 kb on - strand, within BBR_RS14225at 966.732 kb on - strand, within BBR_RS14225at 966.830 kb on + strand, within BBR_RS14225at 966.833 kb on - strand, within BBR_RS14225at 966.840 kb on - strand, within BBR_RS14225at 966.863 kb on - strand, within BBR_RS14225at 966.863 kb on - strand, within BBR_RS14225at 966.926 kb on - strand, within BBR_RS14225at 967.025 kb on + strand, within BBR_RS14225at 967.039 kb on - strand, within BBR_RS14225at 967.053 kb on + strand, within BBR_RS14225at 967.064 kb on + strand, within BBR_RS14225at 967.074 kb on + strand, within BBR_RS14225at 967.106 kb on + strandat 967.208 kb on + strandat 967.278 kb on + strandat 967.284 kb on + strandat 967.332 kb on + strand, within BBR_RS14230at 967.340 kb on - strand, within BBR_RS14230at 967.360 kb on + strand, within BBR_RS14230at 967.365 kb on + strand, within BBR_RS14230at 967.479 kb on - strand, within BBR_RS14230at 967.503 kb on + strand, within BBR_RS14230at 967.509 kb on - strand, within BBR_RS14230at 967.541 kb on + strand, within BBR_RS14230at 967.608 kb on - strand, within BBR_RS14230at 967.609 kb on + strand, within BBR_RS14230at 967.681 kb on - strand, within BBR_RS14230at 967.698 kb on - strand, within BBR_RS14230at 967.707 kb on - strand, within BBR_RS14230at 967.715 kb on + strand, within BBR_RS14230at 967.763 kb on - strand, within BBR_RS14230at 967.763 kb on - strand, within BBR_RS14230at 967.830 kb on - strand, within BBR_RS14230at 967.863 kb on + strand, within BBR_RS14230at 967.915 kb on - strand, within BBR_RS14230at 967.919 kb on - strand, within BBR_RS14230at 967.919 kb on - strand, within BBR_RS14230at 967.920 kb on - strand, within BBR_RS14230at 967.920 kb on - strand, within BBR_RS14230at 968.005 kb on - strand, within BBR_RS14230at 968.014 kb on - strand, within BBR_RS14230at 968.043 kb on - strand, within BBR_RS14230at 968.102 kb on - strand, within BBR_RS14230at 968.117 kb on + strand, within BBR_RS14230

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Per-strain Table

Position Strand Gene LocusTag Fraction reconstituted MRS with Amylopectin from maize 10 mg/ml
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965,503 + -0.7
965,570 - -0.5
965,589 - +0.0
965,620 + +1.2
965,673 + -0.7
965,678 + -1.3
965,681 - -1.6
965,700 + BBR_RS14220 0.11 -1.6
965,700 + BBR_RS14220 0.11 -2.0
965,703 - BBR_RS14220 0.12 -1.6
965,708 - BBR_RS14220 0.12 -1.7
965,710 + BBR_RS14220 0.13 -2.8
965,786 + BBR_RS14220 0.22 -1.5
965,810 - BBR_RS14220 0.25 -1.8
965,834 - BBR_RS14220 0.28 -2.0
965,862 - BBR_RS14220 0.31 -0.7
965,865 + BBR_RS14220 0.32 -2.0
965,883 + BBR_RS14220 0.34 -2.3
965,891 + BBR_RS14220 0.35 -1.5
965,897 - BBR_RS14220 0.36 -1.6
965,919 - BBR_RS14220 0.39 -0.9
965,961 + BBR_RS14220 0.44 -3.2
965,984 - BBR_RS14220 0.47 -0.8
966,096 - BBR_RS14220 0.61 -1.5
966,113 - BBR_RS14220 0.63 -2.1
966,215 + BBR_RS14220 0.75 -2.3
966,222 - BBR_RS14220 0.76 -1.8
966,222 - BBR_RS14220 0.76 -0.7
966,222 - BBR_RS14220 0.76 -2.0
966,234 - BBR_RS14220 0.78 -1.2
966,281 + BBR_RS14220 0.84 -2.9
966,299 - BBR_RS14220 0.86 -1.6
966,367 + -1.9
966,367 + +0.4
966,386 - -0.7
966,391 + +1.1
966,409 - +0.9
966,509 - +0.2
966,528 - +0.1
966,530 + +0.2
966,546 - -0.5
966,546 - -0.1
966,551 - +1.2
966,551 - -0.4
966,627 + BBR_RS14225 0.21 -0.1
966,635 - BBR_RS14225 0.22 -1.8
966,635 - BBR_RS14225 0.22 -0.7
966,732 - BBR_RS14225 0.37 -1.6
966,830 + BBR_RS14225 0.51 -0.8
966,833 - BBR_RS14225 0.52 -0.1
966,840 - BBR_RS14225 0.53 -0.3
966,863 - BBR_RS14225 0.56 -0.4
966,863 - BBR_RS14225 0.56 -1.7
966,926 - BBR_RS14225 0.65 +0.6
967,025 + BBR_RS14225 0.80 -1.0
967,039 - BBR_RS14225 0.82 -0.1
967,053 + BBR_RS14225 0.84 -0.2
967,064 + BBR_RS14225 0.86 -0.3
967,074 + BBR_RS14225 0.87 +0.7
967,106 + +0.4
967,208 + +0.6
967,278 + -1.8
967,284 + -1.3
967,332 + BBR_RS14230 0.11 -2.1
967,340 - BBR_RS14230 0.12 -2.1
967,360 + BBR_RS14230 0.13 -1.3
967,365 + BBR_RS14230 0.14 -0.5
967,479 - BBR_RS14230 0.24 -1.1
967,503 + BBR_RS14230 0.27 -2.4
967,509 - BBR_RS14230 0.27 -3.1
967,541 + BBR_RS14230 0.30 -2.3
967,608 - BBR_RS14230 0.36 -1.6
967,609 + BBR_RS14230 0.37 -1.3
967,681 - BBR_RS14230 0.43 -1.0
967,698 - BBR_RS14230 0.45 -1.9
967,707 - BBR_RS14230 0.46 -0.1
967,715 + BBR_RS14230 0.46 -2.0
967,763 - BBR_RS14230 0.51 -1.7
967,763 - BBR_RS14230 0.51 -1.1
967,830 - BBR_RS14230 0.57 -1.2
967,863 + BBR_RS14230 0.60 -1.3
967,915 - BBR_RS14230 0.65 -1.7
967,919 - BBR_RS14230 0.65 -0.6
967,919 - BBR_RS14230 0.65 -1.8
967,920 - BBR_RS14230 0.66 -1.0
967,920 - BBR_RS14230 0.66 -1.5
968,005 - BBR_RS14230 0.73 -2.0
968,014 - BBR_RS14230 0.74 -1.0
968,043 - BBR_RS14230 0.77 +0.4
968,102 - BBR_RS14230 0.82 -0.8
968,117 + BBR_RS14230 0.84 -1.3

Or see this region's nucleotide sequence