Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4874

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4871 and Ac3H11_4872 are separated by 119 nucleotidesAc3H11_4872 and Ac3H11_4873 are separated by 78 nucleotidesAc3H11_4873 and Ac3H11_4874 are separated by 46 nucleotidesAc3H11_4874 and Ac3H11_4875 are separated by 103 nucleotides Ac3H11_4871 - hypothetical protein, at 31,729 to 33,435 _4871 Ac3H11_4872 - Predicted transcriptional regulator for fatty acid degradation FadP, TetR family, at 33,555 to 34,166 _4872 Ac3H11_4873 - hypothetical protein, at 34,245 to 34,358 _4873 Ac3H11_4874 - VfmD protein, at 34,405 to 35,385 _4874 Ac3H11_4875 - ATP-dependent nuclease, subunit B / ATP-dependent nuclease, subunit A, at 35,489 to 36,505 _4875 Position (kb) 34 35 36Strain fitness (log2 ratio) -2 -1 0 1at 33.422 kb on + strandat 33.422 kb on + strandat 33.422 kb on + strandat 33.423 kb on - strandat 33.423 kb on - strandat 33.423 kb on - strandat 33.879 kb on + strand, within Ac3H11_4872at 33.879 kb on + strand, within Ac3H11_4872at 33.880 kb on - strand, within Ac3H11_4872at 33.880 kb on - strand, within Ac3H11_4872at 33.880 kb on - strand, within Ac3H11_4872at 33.880 kb on - strand, within Ac3H11_4872at 33.880 kb on - strand, within Ac3H11_4872at 34.047 kb on + strand, within Ac3H11_4872at 34.048 kb on - strand, within Ac3H11_4872at 34.048 kb on - strand, within Ac3H11_4872at 34.048 kb on - strand, within Ac3H11_4872at 34.048 kb on - strand, within Ac3H11_4872at 34.146 kb on + strandat 34.146 kb on + strandat 34.146 kb on + strandat 34.146 kb on + strandat 34.146 kb on + strandat 34.146 kb on + strandat 34.146 kb on + strandat 34.146 kb on + strandat 34.146 kb on + strandat 34.146 kb on + strandat 34.147 kb on - strandat 34.147 kb on - strandat 34.147 kb on - strandat 34.147 kb on - strandat 34.147 kb on - strandat 34.147 kb on - strandat 34.456 kb on + strandat 34.456 kb on + strandat 34.654 kb on + strand, within Ac3H11_4874at 34.654 kb on + strand, within Ac3H11_4874at 34.654 kb on + strand, within Ac3H11_4874at 34.654 kb on + strand, within Ac3H11_4874at 34.654 kb on + strand, within Ac3H11_4874at 34.654 kb on + strand, within Ac3H11_4874at 34.655 kb on - strand, within Ac3H11_4874at 34.655 kb on - strand, within Ac3H11_4874at 34.655 kb on - strand, within Ac3H11_4874at 34.655 kb on - strand, within Ac3H11_4874at 34.655 kb on - strand, within Ac3H11_4874at 34.849 kb on + strand, within Ac3H11_4874at 34.850 kb on - strand, within Ac3H11_4874at 34.850 kb on - strand, within Ac3H11_4874at 34.850 kb on - strand, within Ac3H11_4874at 34.850 kb on - strand, within Ac3H11_4874at 34.850 kb on - strand, within Ac3H11_4874at 34.850 kb on - strand, within Ac3H11_4874at 34.898 kb on + strand, within Ac3H11_4874at 34.999 kb on + strand, within Ac3H11_4874at 34.999 kb on + strand, within Ac3H11_4874at 35.393 kb on - strandat 35.407 kb on - strandat 35.422 kb on + strandat 35.423 kb on - strandat 35.423 kb on - strandat 35.985 kb on + strand, within Ac3H11_4875at 35.985 kb on + strand, within Ac3H11_4875at 35.985 kb on + strand, within Ac3H11_4875at 35.985 kb on + strand, within Ac3H11_4875at 35.985 kb on + strand, within Ac3H11_4875at 35.985 kb on + strand, within Ac3H11_4875at 35.985 kb on + strand, within Ac3H11_4875at 35.985 kb on + strand, within Ac3H11_4875at 35.986 kb on - strand, within Ac3H11_4875at 35.986 kb on - strand, within Ac3H11_4875at 36.035 kb on - strand, within Ac3H11_4875at 36.174 kb on + strand, within Ac3H11_4875at 36.175 kb on - strand, within Ac3H11_4875at 36.237 kb on + strand, within Ac3H11_4875at 36.237 kb on + strand, within Ac3H11_4875at 36.238 kb on - strand, within Ac3H11_4875at 36.238 kb on - strand, within Ac3H11_4875at 36.276 kb on + strand, within Ac3H11_4875at 36.276 kb on + strand, within Ac3H11_4875at 36.276 kb on + strand, within Ac3H11_4875at 36.276 kb on + strand, within Ac3H11_4875at 36.277 kb on - strand, within Ac3H11_4875at 36.277 kb on - strand, within Ac3H11_4875at 36.277 kb on - strand, within Ac3H11_4875at 36.277 kb on - strand, within Ac3H11_4875

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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33,422 + +0.1
33,422 + +1.2
33,422 + -0.1
33,423 - -0.5
33,423 - -1.3
33,423 - -0.0
33,879 + Ac3H11_4872 0.53 +0.3
33,879 + Ac3H11_4872 0.53 -1.0
33,880 - Ac3H11_4872 0.53 +0.3
33,880 - Ac3H11_4872 0.53 -2.2
33,880 - Ac3H11_4872 0.53 -0.9
33,880 - Ac3H11_4872 0.53 -0.9
33,880 - Ac3H11_4872 0.53 +1.1
34,047 + Ac3H11_4872 0.80 +0.0
34,048 - Ac3H11_4872 0.81 +0.0
34,048 - Ac3H11_4872 0.81 -0.7
34,048 - Ac3H11_4872 0.81 -0.2
34,048 - Ac3H11_4872 0.81 -0.7
34,146 + +0.5
34,146 + +0.4
34,146 + -0.2
34,146 + +0.1
34,146 + -0.4
34,146 + -0.1
34,146 + -0.4
34,146 + -0.5
34,146 + +0.2
34,146 + +0.4
34,147 - -0.3
34,147 - +0.5
34,147 - -0.5
34,147 - +0.7
34,147 - -0.2
34,147 - -0.9
34,456 + +0.1
34,456 + -0.1
34,654 + Ac3H11_4874 0.25 -0.1
34,654 + Ac3H11_4874 0.25 -0.8
34,654 + Ac3H11_4874 0.25 +0.6
34,654 + Ac3H11_4874 0.25 +0.5
34,654 + Ac3H11_4874 0.25 +0.6
34,654 + Ac3H11_4874 0.25 -1.0
34,655 - Ac3H11_4874 0.25 +0.4
34,655 - Ac3H11_4874 0.25 +1.2
34,655 - Ac3H11_4874 0.25 +0.1
34,655 - Ac3H11_4874 0.25 -0.5
34,655 - Ac3H11_4874 0.25 -0.3
34,849 + Ac3H11_4874 0.45 -0.5
34,850 - Ac3H11_4874 0.45 -0.2
34,850 - Ac3H11_4874 0.45 -1.3
34,850 - Ac3H11_4874 0.45 +0.3
34,850 - Ac3H11_4874 0.45 +0.2
34,850 - Ac3H11_4874 0.45 +0.5
34,850 - Ac3H11_4874 0.45 +0.5
34,898 + Ac3H11_4874 0.50 -0.3
34,999 + Ac3H11_4874 0.61 -0.7
34,999 + Ac3H11_4874 0.61 -0.3
35,393 - -0.1
35,407 - -0.6
35,422 + +0.9
35,423 - -0.1
35,423 - -0.3
35,985 + Ac3H11_4875 0.49 -0.2
35,985 + Ac3H11_4875 0.49 +0.7
35,985 + Ac3H11_4875 0.49 -0.5
35,985 + Ac3H11_4875 0.49 -1.0
35,985 + Ac3H11_4875 0.49 -0.1
35,985 + Ac3H11_4875 0.49 +0.6
35,985 + Ac3H11_4875 0.49 -0.4
35,985 + Ac3H11_4875 0.49 +0.5
35,986 - Ac3H11_4875 0.49 -1.2
35,986 - Ac3H11_4875 0.49 -0.2
36,035 - Ac3H11_4875 0.54 -1.3
36,174 + Ac3H11_4875 0.67 +0.1
36,175 - Ac3H11_4875 0.67 -1.0
36,237 + Ac3H11_4875 0.74 -0.2
36,237 + Ac3H11_4875 0.74 -1.0
36,238 - Ac3H11_4875 0.74 +0.4
36,238 - Ac3H11_4875 0.74 +0.4
36,276 + Ac3H11_4875 0.77 +0.9
36,276 + Ac3H11_4875 0.77 -1.0
36,276 + Ac3H11_4875 0.77 -0.6
36,276 + Ac3H11_4875 0.77 +1.0
36,277 - Ac3H11_4875 0.77 +0.9
36,277 - Ac3H11_4875 0.77 -0.1
36,277 - Ac3H11_4875 0.77 +1.1
36,277 - Ac3H11_4875 0.77 -0.4

Or see this region's nucleotide sequence