Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3331

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3329 and Ac3H11_3330 overlap by 41 nucleotidesAc3H11_3330 and Ac3H11_3331 are separated by 5 nucleotidesAc3H11_3331 and Ac3H11_3332 are separated by 214 nucleotides Ac3H11_3329 - Permease of the drug/metabolite transporter (DMT) superfamily, at 9,046 to 9,999 _3329 Ac3H11_3330 - hypothetical protein, at 9,959 to 10,117 _3330 Ac3H11_3331 - outermembrane protein, at 10,123 to 11,175 _3331 Ac3H11_3332 - Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129), at 11,390 to 13,330 _3332 Position (kb) 10 11 12Strain fitness (log2 ratio) -2 -1 0 1 2at 9.565 kb on + strand, within Ac3H11_3329at 9.565 kb on + strand, within Ac3H11_3329at 9.566 kb on - strand, within Ac3H11_3329at 9.566 kb on - strand, within Ac3H11_3329at 9.566 kb on - strand, within Ac3H11_3329at 9.566 kb on - strand, within Ac3H11_3329at 9.566 kb on - strand, within Ac3H11_3329at 9.566 kb on - strand, within Ac3H11_3329at 9.575 kb on - strand, within Ac3H11_3329at 9.575 kb on - strand, within Ac3H11_3329at 9.575 kb on - strand, within Ac3H11_3329at 9.763 kb on + strand, within Ac3H11_3329at 9.763 kb on + strand, within Ac3H11_3329at 9.763 kb on + strand, within Ac3H11_3329at 9.764 kb on - strand, within Ac3H11_3329at 10.124 kb on + strandat 10.125 kb on - strandat 10.277 kb on + strand, within Ac3H11_3331at 10.277 kb on + strand, within Ac3H11_3331at 10.277 kb on + strand, within Ac3H11_3331at 10.278 kb on - strand, within Ac3H11_3331at 10.278 kb on - strand, within Ac3H11_3331at 10.278 kb on - strand, within Ac3H11_3331at 10.278 kb on - strand, within Ac3H11_3331at 10.278 kb on - strand, within Ac3H11_3331at 10.278 kb on - strand, within Ac3H11_3331at 10.337 kb on + strand, within Ac3H11_3331at 10.338 kb on - strand, within Ac3H11_3331at 10.338 kb on - strand, within Ac3H11_3331at 10.403 kb on + strand, within Ac3H11_3331at 10.403 kb on + strand, within Ac3H11_3331at 10.655 kb on + strand, within Ac3H11_3331at 10.656 kb on - strand, within Ac3H11_3331at 10.775 kb on + strand, within Ac3H11_3331at 10.784 kb on + strand, within Ac3H11_3331at 10.784 kb on + strand, within Ac3H11_3331at 10.784 kb on + strand, within Ac3H11_3331at 10.785 kb on - strand, within Ac3H11_3331at 10.785 kb on - strand, within Ac3H11_3331at 10.785 kb on - strand, within Ac3H11_3331at 10.827 kb on - strand, within Ac3H11_3331at 10.877 kb on + strand, within Ac3H11_3331at 11.036 kb on + strand, within Ac3H11_3331at 11.037 kb on - strand, within Ac3H11_3331at 11.037 kb on - strand, within Ac3H11_3331at 11.328 kb on + strandat 11.328 kb on + strandat 11.328 kb on + strandat 11.328 kb on + strandat 11.329 kb on - strandat 11.329 kb on - strandat 11.338 kb on + strandat 11.338 kb on + strandat 11.338 kb on + strandat 11.339 kb on - strandat 11.339 kb on - strandat 11.339 kb on - strandat 11.339 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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9,565 + Ac3H11_3329 0.54 -0.1
9,565 + Ac3H11_3329 0.54 -0.3
9,566 - Ac3H11_3329 0.55 -0.0
9,566 - Ac3H11_3329 0.55 +1.1
9,566 - Ac3H11_3329 0.55 +1.0
9,566 - Ac3H11_3329 0.55 -0.1
9,566 - Ac3H11_3329 0.55 +0.0
9,566 - Ac3H11_3329 0.55 -0.5
9,575 - Ac3H11_3329 0.55 -1.7
9,575 - Ac3H11_3329 0.55 -0.5
9,575 - Ac3H11_3329 0.55 +0.1
9,763 + Ac3H11_3329 0.75 -2.2
9,763 + Ac3H11_3329 0.75 +1.0
9,763 + Ac3H11_3329 0.75 -1.3
9,764 - Ac3H11_3329 0.75 +1.1
10,124 + -0.4
10,125 - +1.1
10,277 + Ac3H11_3331 0.15 +1.3
10,277 + Ac3H11_3331 0.15 -0.3
10,277 + Ac3H11_3331 0.15 -0.4
10,278 - Ac3H11_3331 0.15 +1.4
10,278 - Ac3H11_3331 0.15 -0.2
10,278 - Ac3H11_3331 0.15 -0.6
10,278 - Ac3H11_3331 0.15 -0.6
10,278 - Ac3H11_3331 0.15 +0.1
10,278 - Ac3H11_3331 0.15 -1.2
10,337 + Ac3H11_3331 0.20 +0.8
10,338 - Ac3H11_3331 0.20 -0.1
10,338 - Ac3H11_3331 0.20 -0.9
10,403 + Ac3H11_3331 0.27 -0.6
10,403 + Ac3H11_3331 0.27 -1.9
10,655 + Ac3H11_3331 0.51 -0.3
10,656 - Ac3H11_3331 0.51 +0.5
10,775 + Ac3H11_3331 0.62 -0.5
10,784 + Ac3H11_3331 0.63 -0.2
10,784 + Ac3H11_3331 0.63 +0.4
10,784 + Ac3H11_3331 0.63 -0.0
10,785 - Ac3H11_3331 0.63 +0.1
10,785 - Ac3H11_3331 0.63 +0.0
10,785 - Ac3H11_3331 0.63 -0.0
10,827 - Ac3H11_3331 0.67 -0.6
10,877 + Ac3H11_3331 0.72 -0.3
11,036 + Ac3H11_3331 0.87 -0.9
11,037 - Ac3H11_3331 0.87 +0.2
11,037 - Ac3H11_3331 0.87 -0.9
11,328 + -0.2
11,328 + -0.1
11,328 + +0.3
11,328 + +0.7
11,329 - -0.0
11,329 - -1.1
11,338 + -0.3
11,338 + +0.2
11,338 + +0.4
11,339 - -1.2
11,339 - +1.9
11,339 - -0.4
11,339 - +0.8

Or see this region's nucleotide sequence