Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3166

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3165 and Ac3H11_3166 are separated by 317 nucleotidesAc3H11_3166 and Ac3H11_3167 are separated by 71 nucleotides Ac3H11_3165 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 66,536 to 69,196 _3165 Ac3H11_3166 - HD domain protein, at 69,514 to 70,398 _3166 Ac3H11_3167 - Signal transduction histidine kinase, at 70,470 to 71,399 _3167 Position (kb) 69 70 71Strain fitness (log2 ratio) -1 0 1 2at 68.536 kb on + strand, within Ac3H11_3165at 68.536 kb on + strand, within Ac3H11_3165at 68.537 kb on - strand, within Ac3H11_3165at 68.537 kb on - strand, within Ac3H11_3165at 68.537 kb on - strand, within Ac3H11_3165at 68.586 kb on - strand, within Ac3H11_3165at 68.593 kb on + strand, within Ac3H11_3165at 68.618 kb on + strand, within Ac3H11_3165at 68.665 kb on - strand, within Ac3H11_3165at 68.667 kb on - strand, within Ac3H11_3165at 68.850 kb on + strand, within Ac3H11_3165at 68.851 kb on - strand, within Ac3H11_3165at 69.024 kb on + strandat 69.114 kb on + strandat 69.153 kb on + strandat 69.153 kb on + strandat 69.154 kb on - strandat 69.295 kb on + strandat 69.295 kb on + strandat 69.296 kb on - strandat 69.296 kb on - strandat 69.296 kb on - strandat 69.296 kb on - strandat 69.405 kb on + strandat 69.406 kb on - strandat 69.423 kb on + strandat 69.424 kb on - strandat 69.429 kb on - strandat 69.429 kb on - strandat 69.429 kb on - strandat 69.497 kb on + strandat 69.497 kb on + strandat 69.497 kb on + strandat 69.498 kb on - strandat 69.498 kb on - strandat 69.548 kb on + strandat 69.548 kb on + strandat 69.608 kb on + strand, within Ac3H11_3166at 69.608 kb on + strand, within Ac3H11_3166at 69.609 kb on - strand, within Ac3H11_3166at 69.710 kb on + strand, within Ac3H11_3166at 69.710 kb on + strand, within Ac3H11_3166at 69.710 kb on + strand, within Ac3H11_3166at 69.728 kb on - strand, within Ac3H11_3166at 69.750 kb on + strand, within Ac3H11_3166at 69.751 kb on - strand, within Ac3H11_3166at 69.751 kb on - strand, within Ac3H11_3166at 69.791 kb on + strand, within Ac3H11_3166at 69.792 kb on - strand, within Ac3H11_3166at 69.792 kb on - strand, within Ac3H11_3166at 69.840 kb on - strand, within Ac3H11_3166at 69.840 kb on - strand, within Ac3H11_3166at 69.840 kb on - strand, within Ac3H11_3166at 70.074 kb on - strand, within Ac3H11_3166at 70.242 kb on - strand, within Ac3H11_3166at 70.373 kb on + strandat 70.373 kb on + strandat 70.373 kb on + strandat 70.373 kb on + strandat 70.374 kb on - strandat 70.374 kb on - strandat 70.403 kb on + strandat 70.403 kb on + strandat 70.403 kb on + strandat 70.404 kb on - strandat 70.404 kb on - strandat 70.404 kb on - strandat 70.448 kb on + strandat 70.448 kb on + strandat 70.448 kb on + strandat 70.448 kb on + strandat 70.448 kb on + strandat 70.449 kb on - strandat 70.449 kb on - strandat 70.449 kb on - strandat 70.449 kb on - strandat 70.535 kb on + strandat 70.536 kb on - strandat 70.695 kb on + strand, within Ac3H11_3167at 70.695 kb on + strand, within Ac3H11_3167at 70.695 kb on + strand, within Ac3H11_3167at 70.696 kb on - strand, within Ac3H11_3167at 70.696 kb on - strand, within Ac3H11_3167at 70.708 kb on + strand, within Ac3H11_3167at 70.729 kb on - strand, within Ac3H11_3167at 70.729 kb on - strand, within Ac3H11_3167at 70.729 kb on - strand, within Ac3H11_3167at 70.790 kb on + strand, within Ac3H11_3167at 70.791 kb on - strand, within Ac3H11_3167at 70.791 kb on - strand, within Ac3H11_3167at 70.809 kb on + strand, within Ac3H11_3167at 70.858 kb on + strand, within Ac3H11_3167at 70.859 kb on - strand, within Ac3H11_3167at 70.859 kb on - strand, within Ac3H11_3167at 70.859 kb on - strand, within Ac3H11_3167at 70.859 kb on - strand, within Ac3H11_3167at 70.859 kb on - strand, within Ac3H11_3167at 70.859 kb on - strand, within Ac3H11_3167at 70.859 kb on - strand, within Ac3H11_3167at 70.859 kb on - strand, within Ac3H11_3167at 70.989 kb on + strand, within Ac3H11_3167at 71.013 kb on + strand, within Ac3H11_3167at 71.014 kb on - strand, within Ac3H11_3167at 71.014 kb on - strand, within Ac3H11_3167at 71.014 kb on - strand, within Ac3H11_3167at 71.062 kb on + strand, within Ac3H11_3167at 71.062 kb on + strand, within Ac3H11_3167at 71.062 kb on + strand, within Ac3H11_3167at 71.062 kb on + strand, within Ac3H11_3167at 71.063 kb on - strand, within Ac3H11_3167at 71.099 kb on + strand, within Ac3H11_3167at 71.100 kb on - strand, within Ac3H11_3167at 71.258 kb on - strand, within Ac3H11_3167at 71.275 kb on - strand, within Ac3H11_3167at 71.275 kb on - strand, within Ac3H11_3167at 71.275 kb on - strand, within Ac3H11_3167at 71.311 kb on + strandat 71.311 kb on + strandat 71.311 kb on + strandat 71.312 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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68,536 + Ac3H11_3165 0.75 +1.1
68,536 + Ac3H11_3165 0.75 -0.3
68,537 - Ac3H11_3165 0.75 +0.8
68,537 - Ac3H11_3165 0.75 +0.3
68,537 - Ac3H11_3165 0.75 -0.2
68,586 - Ac3H11_3165 0.77 +0.5
68,593 + Ac3H11_3165 0.77 -1.1
68,618 + Ac3H11_3165 0.78 +0.4
68,665 - Ac3H11_3165 0.80 -0.2
68,667 - Ac3H11_3165 0.80 +0.6
68,850 + Ac3H11_3165 0.87 +1.1
68,851 - Ac3H11_3165 0.87 +0.4
69,024 + +0.1
69,114 + -0.9
69,153 + -0.0
69,153 + +1.0
69,154 - +0.2
69,295 + -0.2
69,295 + -0.1
69,296 - -0.5
69,296 - +0.7
69,296 - -0.2
69,296 - +1.3
69,405 + -0.3
69,406 - +0.3
69,423 + -0.1
69,424 - -0.3
69,429 - +0.1
69,429 - -0.0
69,429 - +0.1
69,497 + +0.4
69,497 + +0.4
69,497 + -0.6
69,498 - -0.6
69,498 - -0.1
69,548 + -0.1
69,548 + +1.3
69,608 + Ac3H11_3166 0.11 -0.1
69,608 + Ac3H11_3166 0.11 -0.4
69,609 - Ac3H11_3166 0.11 +0.1
69,710 + Ac3H11_3166 0.22 -0.5
69,710 + Ac3H11_3166 0.22 +1.1
69,710 + Ac3H11_3166 0.22 +0.6
69,728 - Ac3H11_3166 0.24 -1.5
69,750 + Ac3H11_3166 0.27 +1.2
69,751 - Ac3H11_3166 0.27 +0.4
69,751 - Ac3H11_3166 0.27 +0.2
69,791 + Ac3H11_3166 0.31 -0.1
69,792 - Ac3H11_3166 0.31 -0.7
69,792 - Ac3H11_3166 0.31 -0.2
69,840 - Ac3H11_3166 0.37 +0.0
69,840 - Ac3H11_3166 0.37 -1.5
69,840 - Ac3H11_3166 0.37 +0.1
70,074 - Ac3H11_3166 0.63 -0.1
70,242 - Ac3H11_3166 0.82 +1.8
70,373 + -0.4
70,373 + -0.5
70,373 + -0.1
70,373 + +0.1
70,374 - -1.4
70,374 - -0.8
70,403 + -0.2
70,403 + -0.6
70,403 + +0.0
70,404 - +0.3
70,404 - +0.6
70,404 - +1.2
70,448 + -0.1
70,448 + -0.1
70,448 + -1.2
70,448 + -1.2
70,448 + -0.9
70,449 - +0.6
70,449 - -0.5
70,449 - +0.5
70,449 - +0.4
70,535 + +0.0
70,536 - -0.2
70,695 + Ac3H11_3167 0.24 -0.1
70,695 + Ac3H11_3167 0.24 +1.2
70,695 + Ac3H11_3167 0.24 +1.2
70,696 - Ac3H11_3167 0.24 -0.1
70,696 - Ac3H11_3167 0.24 -0.9
70,708 + Ac3H11_3167 0.26 +0.5
70,729 - Ac3H11_3167 0.28 +0.0
70,729 - Ac3H11_3167 0.28 -0.2
70,729 - Ac3H11_3167 0.28 -1.3
70,790 + Ac3H11_3167 0.34 +0.2
70,791 - Ac3H11_3167 0.35 -0.6
70,791 - Ac3H11_3167 0.35 -1.5
70,809 + Ac3H11_3167 0.36 -0.6
70,858 + Ac3H11_3167 0.42 -1.0
70,859 - Ac3H11_3167 0.42 +0.3
70,859 - Ac3H11_3167 0.42 +0.7
70,859 - Ac3H11_3167 0.42 -0.3
70,859 - Ac3H11_3167 0.42 +0.9
70,859 - Ac3H11_3167 0.42 +1.5
70,859 - Ac3H11_3167 0.42 +0.4
70,859 - Ac3H11_3167 0.42 +1.2
70,859 - Ac3H11_3167 0.42 +0.2
70,989 + Ac3H11_3167 0.56 +0.3
71,013 + Ac3H11_3167 0.58 -0.1
71,014 - Ac3H11_3167 0.58 +0.1
71,014 - Ac3H11_3167 0.58 +1.4
71,014 - Ac3H11_3167 0.58 +0.5
71,062 + Ac3H11_3167 0.64 +0.2
71,062 + Ac3H11_3167 0.64 +0.9
71,062 + Ac3H11_3167 0.64 +0.9
71,062 + Ac3H11_3167 0.64 +0.9
71,063 - Ac3H11_3167 0.64 +0.2
71,099 + Ac3H11_3167 0.68 +1.6
71,100 - Ac3H11_3167 0.68 +1.7
71,258 - Ac3H11_3167 0.85 +0.7
71,275 - Ac3H11_3167 0.87 +0.1
71,275 - Ac3H11_3167 0.87 +0.6
71,275 - Ac3H11_3167 0.87 +0.7
71,311 + -0.0
71,311 + +0.8
71,311 + -0.4
71,312 - +0.4

Or see this region's nucleotide sequence