Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2841

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2839 and Ac3H11_2840 are separated by 98 nucleotidesAc3H11_2840 and Ac3H11_2841 are separated by 41 nucleotidesAc3H11_2841 and Ac3H11_2842 are separated by 3 nucleotidesAc3H11_2842 and Ac3H11_2843 are separated by 259 nucleotides Ac3H11_2839 - FOG: HEAT repeat, at 1,146,907 to 1,147,116 _2839 Ac3H11_2840 - Ferric siderophore transport system, periplasmic binding protein TonB, at 1,147,215 to 1,147,901 _2840 Ac3H11_2841 - MotA/TolQ/ExbB proton channel family protein, at 1,147,943 to 1,148,662 _2841 Ac3H11_2842 - Biopolymer transport protein ExbD/TolR, at 1,148,666 to 1,149,073 _2842 Ac3H11_2843 - Hemin uptake protein, at 1,149,333 to 1,149,575 _2843 Position (kb) 1147 1148 1149Strain fitness (log2 ratio) -2 -1 0 1 2at 1147.156 kb on - strandat 1147.169 kb on + strandat 1147.187 kb on + strandat 1147.214 kb on + strandat 1147.214 kb on + strandat 1148.660 kb on + strandat 1148.660 kb on + strandat 1148.660 kb on + strandat 1148.660 kb on + strandat 1148.660 kb on + strandat 1148.660 kb on + strandat 1148.660 kb on + strandat 1148.660 kb on + strandat 1148.660 kb on + strandat 1148.661 kb on - strandat 1148.661 kb on - strandat 1149.071 kb on + strandat 1149.071 kb on + strandat 1149.071 kb on + strandat 1149.072 kb on - strandat 1149.072 kb on - strandat 1149.072 kb on - strandat 1149.072 kb on - strandat 1149.072 kb on - strandat 1149.072 kb on - strandat 1149.072 kb on - strandat 1149.072 kb on - strandat 1149.072 kb on - strandat 1149.072 kb on - strandat 1149.075 kb on + strandat 1149.075 kb on + strandat 1149.075 kb on + strandat 1149.075 kb on + strandat 1149.075 kb on + strandat 1149.075 kb on + strandat 1149.075 kb on + strandat 1149.075 kb on + strandat 1149.075 kb on + strandat 1149.075 kb on + strandat 1149.076 kb on - strandat 1149.076 kb on - strandat 1149.076 kb on - strandat 1149.076 kb on - strandat 1149.076 kb on - strandat 1149.076 kb on - strandat 1149.076 kb on - strandat 1149.076 kb on - strandat 1149.085 kb on + strandat 1149.101 kb on + strandat 1149.101 kb on + strandat 1149.102 kb on - strandat 1149.102 kb on - strandat 1149.102 kb on - strandat 1149.232 kb on + strandat 1149.232 kb on + strandat 1149.233 kb on - strandat 1149.233 kb on - strandat 1149.233 kb on - strandat 1149.233 kb on - strandat 1149.233 kb on - strandat 1149.233 kb on - strandat 1149.335 kb on - strandat 1149.529 kb on - strand, within Ac3H11_2843at 1149.573 kb on + strandat 1149.573 kb on + strandat 1149.573 kb on + strandat 1149.573 kb on + strandat 1149.573 kb on + strandat 1149.574 kb on - strandat 1149.574 kb on - strandat 1149.574 kb on - strandat 1149.574 kb on - strandat 1149.574 kb on - strandat 1149.574 kb on - strandat 1149.574 kb on - strandat 1149.574 kb on - strandat 1149.574 kb on - strandat 1149.574 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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1,147,156 - -0.6
1,147,169 + -1.9
1,147,187 + -0.8
1,147,214 + +0.5
1,147,214 + -0.3
1,148,660 + -1.2
1,148,660 + -1.2
1,148,660 + -0.7
1,148,660 + -0.6
1,148,660 + -0.4
1,148,660 + -0.1
1,148,660 + +0.2
1,148,660 + +0.4
1,148,660 + -0.5
1,148,661 - -1.8
1,148,661 - -0.7
1,149,071 + -0.8
1,149,071 + -0.8
1,149,071 + -0.1
1,149,072 - +1.3
1,149,072 - +0.9
1,149,072 - -0.1
1,149,072 - -0.7
1,149,072 - +0.2
1,149,072 - -0.6
1,149,072 - -0.3
1,149,072 - -0.5
1,149,072 - -1.0
1,149,072 - +1.0
1,149,075 + -0.8
1,149,075 + -0.5
1,149,075 + -0.7
1,149,075 + +0.2
1,149,075 + -0.3
1,149,075 + +0.3
1,149,075 + -0.3
1,149,075 + -1.1
1,149,075 + -1.0
1,149,075 + -0.3
1,149,076 - +0.2
1,149,076 - -0.8
1,149,076 - +1.8
1,149,076 - -0.4
1,149,076 - -2.3
1,149,076 - -1.5
1,149,076 - -1.4
1,149,076 - +0.2
1,149,085 + -0.6
1,149,101 + +0.1
1,149,101 + -0.2
1,149,102 - -1.2
1,149,102 - +0.3
1,149,102 - -1.2
1,149,232 + +0.2
1,149,232 + -1.2
1,149,233 - -1.3
1,149,233 - -1.4
1,149,233 - -1.0
1,149,233 - -1.3
1,149,233 - -1.1
1,149,233 - -0.1
1,149,335 - -1.0
1,149,529 - Ac3H11_2843 0.81 +0.4
1,149,573 + -0.3
1,149,573 + +0.5
1,149,573 + +0.4
1,149,573 + -1.3
1,149,573 + -0.5
1,149,574 - -1.7
1,149,574 - +0.2
1,149,574 - +0.6
1,149,574 - +0.2
1,149,574 - +0.3
1,149,574 - -0.2
1,149,574 - -1.5
1,149,574 - -0.4
1,149,574 - -0.2
1,149,574 - +0.3

Or see this region's nucleotide sequence