Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2653 and Ac3H11_2654 are separated by 10 nucleotides Ac3H11_2654 and Ac3H11_2655 are separated by 128 nucleotides Ac3H11_2655 and Ac3H11_2656 overlap by 4 nucleotides Ac3H11_2656 and Ac3H11_2657 are separated by 35 nucleotides
Ac3H11_2653 - Cys-tRNA(Pro) deacylase YbaK, at 947,026 to 948,024
_2653
Ac3H11_2654 - putative HNS-like transcription regulator protein, at 948,035 to 948,364
_2654
Ac3H11_2655 - hypothetical protein, at 948,493 to 948,702
_2655
Ac3H11_2656 - UBA/THIF-type NAD/FAD binding fold, at 948,699 to 949,565
_2656
Ac3H11_2657 - FIG00576391: hypothetical protein, at 949,601 to 950,299
_2657
Position (kb) 948
949 Strain fitness (log2 ratio) -2
-1
0
1 at 947.587 kb on + strand, within Ac3H11_2653 at 947.587 kb on + strand, within Ac3H11_2653 at 947.588 kb on - strand, within Ac3H11_2653 at 947.588 kb on - strand, within Ac3H11_2653 at 947.588 kb on - strand, within Ac3H11_2653 at 947.588 kb on - strand, within Ac3H11_2653 at 947.588 kb on - strand, within Ac3H11_2653 at 947.588 kb on - strand, within Ac3H11_2653 at 947.588 kb on - strand, within Ac3H11_2653 at 947.588 kb on - strand, within Ac3H11_2653 at 947.588 kb on - strand, within Ac3H11_2653 at 947.588 kb on - strand, within Ac3H11_2653 at 947.749 kb on + strand, within Ac3H11_2653 at 947.833 kb on + strand, within Ac3H11_2653 at 947.962 kb on + strand at 947.962 kb on + strand at 947.962 kb on + strand at 947.963 kb on - strand at 947.963 kb on - strand at 947.963 kb on - strand at 947.963 kb on - strand at 947.964 kb on + strand at 947.964 kb on + strand at 947.964 kb on + strand at 947.964 kb on + strand at 947.966 kb on + strand at 947.966 kb on + strand at 947.966 kb on + strand at 947.966 kb on + strand at 947.966 kb on + strand at 947.967 kb on - strand at 947.967 kb on - strand at 947.967 kb on - strand at 947.967 kb on - strand at 947.967 kb on - strand at 947.967 kb on - strand at 948.237 kb on + strand, within Ac3H11_2654 at 948.238 kb on - strand, within Ac3H11_2654 at 948.342 kb on - strand at 948.364 kb on + strand at 948.365 kb on - strand at 948.444 kb on + strand at 948.445 kb on - strand at 948.447 kb on - strand at 948.452 kb on + strand at 948.452 kb on + strand at 948.452 kb on + strand at 948.453 kb on - strand at 948.453 kb on - strand at 948.478 kb on + strand at 948.479 kb on - strand at 948.508 kb on + strand at 948.530 kb on + strand, within Ac3H11_2655 at 948.531 kb on - strand, within Ac3H11_2655 at 948.554 kb on - strand, within Ac3H11_2655 at 948.744 kb on - strand at 948.744 kb on - strand at 948.744 kb on - strand at 948.878 kb on - strand, within Ac3H11_2656 at 949.249 kb on + strand, within Ac3H11_2656 at 949.283 kb on - strand, within Ac3H11_2656 at 949.325 kb on + strand, within Ac3H11_2656 at 949.345 kb on + strand, within Ac3H11_2656 at 949.345 kb on + strand, within Ac3H11_2656 at 949.346 kb on - strand, within Ac3H11_2656 at 949.346 kb on - strand, within Ac3H11_2656
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 947,587 + Ac3H11_2653 0.56 -0.3 947,587 + Ac3H11_2653 0.56 -1.5 947,588 - Ac3H11_2653 0.56 -0.7 947,588 - Ac3H11_2653 0.56 -0.7 947,588 - Ac3H11_2653 0.56 -0.7 947,588 - Ac3H11_2653 0.56 +0.8 947,588 - Ac3H11_2653 0.56 -1.0 947,588 - Ac3H11_2653 0.56 +1.1 947,588 - Ac3H11_2653 0.56 -0.4 947,588 - Ac3H11_2653 0.56 +0.9 947,588 - Ac3H11_2653 0.56 +0.5 947,588 - Ac3H11_2653 0.56 -0.3 947,749 + Ac3H11_2653 0.72 +0.1 947,833 + Ac3H11_2653 0.81 +0.1 947,962 + +0.4 947,962 + -1.1 947,962 + -0.9 947,963 - -1.3 947,963 - +0.2 947,963 - +0.0 947,963 - +0.4 947,964 + +1.2 947,964 + +1.0 947,964 + -0.0 947,964 + -0.6 947,966 + -0.2 947,966 + +0.6 947,966 + +1.6 947,966 + +0.7 947,966 + -1.3 947,967 - +0.1 947,967 - +0.0 947,967 - -0.3 947,967 - -0.0 947,967 - +0.2 947,967 - -0.0 948,237 + Ac3H11_2654 0.61 -0.4 948,238 - Ac3H11_2654 0.62 -0.0 948,342 - +0.6 948,364 + +0.4 948,365 - -0.3 948,444 + +1.3 948,445 - +0.1 948,447 - -0.6 948,452 + -1.1 948,452 + -0.3 948,452 + -0.8 948,453 - -1.0 948,453 - -0.6 948,478 + -0.2 948,479 - -0.5 948,508 + -0.9 948,530 + Ac3H11_2655 0.18 +0.1 948,531 - Ac3H11_2655 0.18 -1.4 948,554 - Ac3H11_2655 0.29 -2.0 948,744 - +0.9 948,744 - +0.7 948,744 - -1.5 948,878 - Ac3H11_2656 0.21 +0.5 949,249 + Ac3H11_2656 0.63 +0.2 949,283 - Ac3H11_2656 0.67 -0.3 949,325 + Ac3H11_2656 0.72 +0.1 949,345 + Ac3H11_2656 0.75 -0.1 949,345 + Ac3H11_2656 0.75 +0.6 949,346 - Ac3H11_2656 0.75 -0.9 949,346 - Ac3H11_2656 0.75 +0.8
Or see this region's nucleotide sequence