Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1996

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1995 and Ac3H11_1996 are separated by 31 nucleotidesAc3H11_1996 and Ac3H11_1997 are separated by 73 nucleotides Ac3H11_1995 - Tyrosine recombinase XerC, at 210,851 to 211,834 _1995 Ac3H11_1996 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 211,866 to 213,467 _1996 Ac3H11_1997 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 213,541 to 215,325 _1997 Position (kb) 211 212 213 214Strain fitness (log2 ratio) -2 -1 0 1at 210.902 kb on + strandat 210.957 kb on - strand, within Ac3H11_1995at 210.957 kb on - strand, within Ac3H11_1995at 211.304 kb on + strand, within Ac3H11_1995at 211.304 kb on + strand, within Ac3H11_1995at 211.304 kb on + strand, within Ac3H11_1995at 211.305 kb on - strand, within Ac3H11_1995at 211.305 kb on - strand, within Ac3H11_1995at 211.751 kb on + strandat 211.751 kb on + strandat 211.752 kb on - strandat 211.753 kb on + strandat 211.754 kb on - strandat 211.788 kb on - strandat 211.832 kb on + strandat 211.832 kb on + strandat 211.832 kb on + strandat 211.833 kb on - strandat 211.948 kb on + strandat 211.948 kb on + strandat 211.948 kb on + strandat 211.948 kb on + strandat 211.948 kb on + strandat 211.948 kb on + strandat 211.948 kb on + strandat 211.948 kb on + strandat 211.948 kb on + strandat 211.948 kb on + strandat 211.948 kb on + strandat 211.948 kb on + strandat 211.948 kb on + strandat 211.948 kb on + strandat 211.948 kb on + strandat 211.949 kb on - strandat 211.949 kb on - strandat 211.949 kb on - strandat 212.235 kb on + strand, within Ac3H11_1996at 212.235 kb on + strand, within Ac3H11_1996at 212.235 kb on + strand, within Ac3H11_1996at 212.909 kb on + strand, within Ac3H11_1996at 212.938 kb on + strand, within Ac3H11_1996at 212.939 kb on - strand, within Ac3H11_1996at 212.939 kb on - strand, within Ac3H11_1996at 212.939 kb on - strand, within Ac3H11_1996at 212.970 kb on + strand, within Ac3H11_1996at 212.970 kb on + strand, within Ac3H11_1996at 212.971 kb on - strand, within Ac3H11_1996at 212.971 kb on - strand, within Ac3H11_1996at 212.971 kb on - strand, within Ac3H11_1996at 213.013 kb on + strand, within Ac3H11_1996at 213.013 kb on + strand, within Ac3H11_1996at 213.013 kb on + strand, within Ac3H11_1996at 213.013 kb on + strand, within Ac3H11_1996at 213.013 kb on + strand, within Ac3H11_1996at 213.014 kb on - strand, within Ac3H11_1996at 213.014 kb on - strand, within Ac3H11_1996at 213.031 kb on + strand, within Ac3H11_1996at 213.032 kb on - strand, within Ac3H11_1996at 213.032 kb on - strand, within Ac3H11_1996at 213.284 kb on - strand, within Ac3H11_1996at 213.284 kb on - strand, within Ac3H11_1996at 213.334 kb on + strandat 213.505 kb on + strandat 213.505 kb on + strandat 213.506 kb on - strandat 213.696 kb on + strandat 213.697 kb on - strandat 213.697 kb on - strandat 213.697 kb on - strandat 213.697 kb on - strandat 214.123 kb on + strand, within Ac3H11_1997at 214.123 kb on + strand, within Ac3H11_1997at 214.123 kb on + strand, within Ac3H11_1997at 214.124 kb on - strand, within Ac3H11_1997at 214.186 kb on + strand, within Ac3H11_1997at 214.186 kb on + strand, within Ac3H11_1997at 214.187 kb on - strand, within Ac3H11_1997

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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210,902 + -1.0
210,957 - Ac3H11_1995 0.11 -1.4
210,957 - Ac3H11_1995 0.11 -1.4
211,304 + Ac3H11_1995 0.46 -2.2
211,304 + Ac3H11_1995 0.46 -0.9
211,304 + Ac3H11_1995 0.46 -0.9
211,305 - Ac3H11_1995 0.46 -0.3
211,305 - Ac3H11_1995 0.46 +0.8
211,751 + -1.5
211,751 + -1.0
211,752 - +0.6
211,753 + +0.4
211,754 - +0.1
211,788 - -1.6
211,832 + +0.1
211,832 + -0.8
211,832 + -0.2
211,833 - +0.2
211,948 + -1.7
211,948 + +0.6
211,948 + +0.5
211,948 + -0.6
211,948 + -0.3
211,948 + -0.5
211,948 + +0.1
211,948 + -1.4
211,948 + -0.7
211,948 + -0.1
211,948 + -0.3
211,948 + -1.0
211,948 + +1.0
211,948 + +1.1
211,948 + +0.4
211,949 - -0.7
211,949 - -0.5
211,949 - -1.1
212,235 + Ac3H11_1996 0.23 +0.2
212,235 + Ac3H11_1996 0.23 -0.9
212,235 + Ac3H11_1996 0.23 -2.3
212,909 + Ac3H11_1996 0.65 -0.4
212,938 + Ac3H11_1996 0.67 -0.8
212,939 - Ac3H11_1996 0.67 -0.0
212,939 - Ac3H11_1996 0.67 -1.1
212,939 - Ac3H11_1996 0.67 +0.9
212,970 + Ac3H11_1996 0.69 +0.3
212,970 + Ac3H11_1996 0.69 +1.1
212,971 - Ac3H11_1996 0.69 +0.1
212,971 - Ac3H11_1996 0.69 -0.5
212,971 - Ac3H11_1996 0.69 -1.4
213,013 + Ac3H11_1996 0.72 -1.3
213,013 + Ac3H11_1996 0.72 -0.8
213,013 + Ac3H11_1996 0.72 -1.5
213,013 + Ac3H11_1996 0.72 -0.6
213,013 + Ac3H11_1996 0.72 -2.4
213,014 - Ac3H11_1996 0.72 +0.1
213,014 - Ac3H11_1996 0.72 +0.1
213,031 + Ac3H11_1996 0.73 +0.7
213,032 - Ac3H11_1996 0.73 +0.2
213,032 - Ac3H11_1996 0.73 -0.8
213,284 - Ac3H11_1996 0.89 -0.3
213,284 - Ac3H11_1996 0.89 +1.4
213,334 + +0.3
213,505 + -0.1
213,505 + -1.1
213,506 - +0.6
213,696 + +1.1
213,697 - -0.2
213,697 - -0.3
213,697 - -0.2
213,697 - +1.4
214,123 + Ac3H11_1997 0.33 -1.1
214,123 + Ac3H11_1997 0.33 -1.0
214,123 + Ac3H11_1997 0.33 -0.9
214,124 - Ac3H11_1997 0.33 -0.7
214,186 + Ac3H11_1997 0.36 +0.1
214,186 + Ac3H11_1997 0.36 -0.4
214,187 - Ac3H11_1997 0.36 -0.4

Or see this region's nucleotide sequence