Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26840

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26830 and AO353_26835 are separated by 2 nucleotidesAO353_26835 and AO353_26840 are separated by 275 nucleotidesAO353_26840 and AO353_26845 are separated by 16 nucleotides AO353_26830: AO353_26830 - histidine kinase, at 5,876,804 to 5,878,105 _26830 AO353_26835: AO353_26835 - transcriptional regulator, at 5,878,108 to 5,878,809 _26835 AO353_26840: AO353_26840 - RND transporter, at 5,879,085 to 5,880,242 _26840 AO353_26845: AO353_26845 - acriflavine resistance protein B, at 5,880,259 to 5,883,357 _26845 Position (kb) 5879 5880 5881Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5878.291 kb on + strand, within AO353_26835at 5878.291 kb on + strand, within AO353_26835at 5878.292 kb on - strand, within AO353_26835at 5878.292 kb on - strand, within AO353_26835at 5878.331 kb on + strand, within AO353_26835at 5878.332 kb on - strand, within AO353_26835at 5878.332 kb on - strand, within AO353_26835at 5878.514 kb on + strand, within AO353_26835at 5878.515 kb on - strand, within AO353_26835at 5878.895 kb on - strandat 5878.911 kb on + strandat 5878.917 kb on + strandat 5878.917 kb on + strandat 5878.918 kb on - strandat 5878.918 kb on - strandat 5878.918 kb on - strandat 5878.964 kb on + strandat 5878.964 kb on + strandat 5878.964 kb on + strandat 5878.964 kb on + strandat 5878.966 kb on + strandat 5878.966 kb on + strandat 5878.966 kb on + strandat 5878.966 kb on + strandat 5878.966 kb on + strandat 5878.967 kb on - strandat 5878.967 kb on - strandat 5878.967 kb on - strandat 5878.967 kb on - strandat 5878.967 kb on - strandat 5878.967 kb on - strandat 5878.967 kb on - strandat 5878.967 kb on - strandat 5878.967 kb on - strandat 5878.967 kb on - strandat 5878.967 kb on - strandat 5878.988 kb on + strandat 5878.988 kb on + strandat 5878.989 kb on - strandat 5878.989 kb on - strandat 5878.997 kb on + strandat 5878.997 kb on + strandat 5879.018 kb on + strandat 5879.018 kb on + strandat 5879.018 kb on + strandat 5879.019 kb on - strandat 5879.019 kb on - strandat 5879.019 kb on - strandat 5879.019 kb on - strandat 5879.054 kb on - strandat 5879.078 kb on + strandat 5879.078 kb on + strandat 5879.079 kb on - strandat 5879.082 kb on + strandat 5879.082 kb on + strandat 5879.082 kb on + strandat 5879.082 kb on + strandat 5879.082 kb on + strandat 5879.082 kb on + strandat 5879.082 kb on + strandat 5879.082 kb on + strandat 5879.082 kb on + strandat 5879.082 kb on + strandat 5879.082 kb on + strandat 5879.082 kb on + strandat 5879.082 kb on + strandat 5879.082 kb on + strandat 5879.082 kb on + strandat 5879.082 kb on + strandat 5879.083 kb on - strandat 5879.083 kb on - strandat 5879.083 kb on - strandat 5879.083 kb on - strandat 5879.083 kb on - strandat 5879.083 kb on - strandat 5879.083 kb on - strandat 5879.083 kb on - strandat 5879.083 kb on - strandat 5879.083 kb on - strandat 5879.083 kb on - strandat 5879.083 kb on - strandat 5879.083 kb on - strandat 5879.083 kb on - strandat 5879.083 kb on - strandat 5879.083 kb on - strandat 5879.083 kb on - strandat 5879.083 kb on - strandat 5879.499 kb on + strand, within AO353_26840at 5879.500 kb on - strand, within AO353_26840at 5879.835 kb on + strand, within AO353_26840at 5879.836 kb on - strand, within AO353_26840at 5879.991 kb on - strand, within AO353_26840at 5880.194 kb on - strandat 5880.258 kb on + strandat 5880.259 kb on - strandat 5880.313 kb on - strandat 5880.394 kb on + strandat 5880.395 kb on - strandat 5880.395 kb on - strandat 5880.395 kb on - strandat 5880.395 kb on - strandat 5880.395 kb on - strandat 5880.488 kb on - strandat 5880.725 kb on - strand, within AO353_26845at 5880.787 kb on + strand, within AO353_26845at 5880.788 kb on - strand, within AO353_26845at 5880.788 kb on - strand, within AO353_26845at 5880.788 kb on - strand, within AO353_26845at 5881.079 kb on - strand, within AO353_26845at 5881.202 kb on - strand, within AO353_26845at 5881.202 kb on - strand, within AO353_26845at 5881.223 kb on - strand, within AO353_26845at 5881.223 kb on - strand, within AO353_26845at 5881.223 kb on - strand, within AO353_26845at 5881.223 kb on - strand, within AO353_26845

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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5,878,291 + AO353_26835 0.26 -1.6
5,878,291 + AO353_26835 0.26 -0.2
5,878,292 - AO353_26835 0.26 -2.1
5,878,292 - AO353_26835 0.26 +0.1
5,878,331 + AO353_26835 0.32 -1.2
5,878,332 - AO353_26835 0.32 +0.4
5,878,332 - AO353_26835 0.32 -1.3
5,878,514 + AO353_26835 0.58 -0.1
5,878,515 - AO353_26835 0.58 +3.0
5,878,895 - -0.2
5,878,911 + -1.2
5,878,917 + +1.9
5,878,917 + -0.6
5,878,918 - +0.3
5,878,918 - +0.7
5,878,918 - +1.0
5,878,964 + -0.6
5,878,964 + -2.1
5,878,964 + -0.8
5,878,964 + -0.1
5,878,966 + +0.3
5,878,966 + +1.1
5,878,966 + -0.8
5,878,966 + -0.3
5,878,966 + +0.3
5,878,967 - +0.2
5,878,967 - -1.6
5,878,967 - +0.1
5,878,967 - +0.1
5,878,967 - +0.9
5,878,967 - -1.4
5,878,967 - -0.3
5,878,967 - -1.3
5,878,967 - +0.8
5,878,967 - +0.3
5,878,967 - -2.4
5,878,988 + +0.3
5,878,988 + +0.7
5,878,989 - -0.3
5,878,989 - -0.0
5,878,997 + -0.6
5,878,997 + -1.0
5,879,018 + +0.4
5,879,018 + +1.2
5,879,018 + -1.4
5,879,019 - +0.7
5,879,019 - -1.0
5,879,019 - -1.4
5,879,019 - -0.6
5,879,054 - -0.9
5,879,078 + -1.5
5,879,078 + +0.0
5,879,079 - -0.3
5,879,082 + -1.0
5,879,082 + -0.6
5,879,082 + +0.0
5,879,082 + +0.0
5,879,082 + +0.1
5,879,082 + -0.7
5,879,082 + -0.2
5,879,082 + -0.6
5,879,082 + -0.6
5,879,082 + -1.1
5,879,082 + -1.2
5,879,082 + -0.3
5,879,082 + -2.0
5,879,082 + -0.8
5,879,082 + +1.3
5,879,082 + +1.0
5,879,083 - +0.2
5,879,083 - -2.1
5,879,083 - -0.3
5,879,083 - +0.4
5,879,083 - +0.3
5,879,083 - -1.2
5,879,083 - -2.4
5,879,083 - -0.6
5,879,083 - -0.1
5,879,083 - -0.6
5,879,083 - -1.1
5,879,083 - -0.3
5,879,083 - +0.1
5,879,083 - -0.1
5,879,083 - -0.1
5,879,083 - +0.7
5,879,083 - -0.8
5,879,083 - +1.2
5,879,499 + AO353_26840 0.36 -0.3
5,879,500 - AO353_26840 0.36 -0.9
5,879,835 + AO353_26840 0.65 -1.1
5,879,836 - AO353_26840 0.65 -1.0
5,879,991 - AO353_26840 0.78 +0.8
5,880,194 - -0.9
5,880,258 + -1.0
5,880,259 - -0.8
5,880,313 - +0.6
5,880,394 + +0.0
5,880,395 - -0.5
5,880,395 - -1.0
5,880,395 - -1.3
5,880,395 - +0.0
5,880,395 - -0.8
5,880,488 - -0.2
5,880,725 - AO353_26845 0.15 -1.2
5,880,787 + AO353_26845 0.17 -1.2
5,880,788 - AO353_26845 0.17 +0.6
5,880,788 - AO353_26845 0.17 +0.6
5,880,788 - AO353_26845 0.17 +0.0
5,881,079 - AO353_26845 0.26 -0.6
5,881,202 - AO353_26845 0.30 +1.0
5,881,202 - AO353_26845 0.30 -0.4
5,881,223 - AO353_26845 0.31 -1.0
5,881,223 - AO353_26845 0.31 -3.6
5,881,223 - AO353_26845 0.31 +1.6
5,881,223 - AO353_26845 0.31 +0.2

Or see this region's nucleotide sequence