Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25670

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25665 and AO353_25670 are separated by 3 nucleotidesAO353_25670 and AO353_25675 are separated by 96 nucleotidesAO353_25675 and AO353_25680 are separated by 13 nucleotides AO353_25665: AO353_25665 - 3-hydroxy-isobutyryl-CoA hydrolase (EC 3.1.2.4) (from data), at 5,659,716 to 5,660,822 _25665 AO353_25670: AO353_25670 - isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data), at 5,660,826 to 5,661,977 _25670 AO353_25675: AO353_25675 - enoyl-CoA hydratase, at 5,662,074 to 5,662,847 _25675 AO353_25680: AO353_25680 - 2-methylbutanoyl-CoA dehydrogenase / butanoyl-CoA dehydrogenase / isobutyryl-CoA dehydrogenase (EC 1.3.8.1; EC 1.3.8.5) (from data), at 5,662,861 to 5,663,988 _25680 Position (kb) 5660 5661 5662Strain fitness (log2 ratio) -2 -1 0 1 2at 5660.025 kb on + strand, within AO353_25665at 5660.026 kb on - strand, within AO353_25665at 5660.181 kb on + strand, within AO353_25665at 5660.205 kb on + strand, within AO353_25665at 5660.205 kb on + strand, within AO353_25665at 5660.205 kb on + strand, within AO353_25665at 5660.205 kb on + strand, within AO353_25665at 5660.241 kb on + strand, within AO353_25665at 5660.241 kb on + strand, within AO353_25665at 5660.241 kb on + strand, within AO353_25665at 5660.241 kb on + strand, within AO353_25665at 5660.241 kb on + strand, within AO353_25665at 5660.286 kb on + strand, within AO353_25665at 5660.286 kb on + strand, within AO353_25665at 5660.287 kb on - strand, within AO353_25665at 5660.308 kb on - strand, within AO353_25665at 5660.396 kb on - strand, within AO353_25665at 5660.414 kb on - strand, within AO353_25665at 5660.561 kb on - strand, within AO353_25665at 5660.594 kb on - strand, within AO353_25665at 5661.015 kb on + strand, within AO353_25670at 5661.015 kb on + strand, within AO353_25670at 5661.015 kb on + strand, within AO353_25670at 5661.015 kb on + strand, within AO353_25670at 5661.016 kb on - strand, within AO353_25670at 5661.016 kb on - strand, within AO353_25670at 5661.016 kb on - strand, within AO353_25670at 5661.024 kb on + strand, within AO353_25670at 5661.024 kb on + strand, within AO353_25670at 5661.024 kb on + strand, within AO353_25670at 5661.025 kb on - strand, within AO353_25670at 5661.033 kb on + strand, within AO353_25670at 5661.129 kb on + strand, within AO353_25670at 5661.129 kb on + strand, within AO353_25670at 5661.129 kb on + strand, within AO353_25670at 5661.129 kb on + strand, within AO353_25670at 5661.129 kb on + strand, within AO353_25670at 5661.129 kb on + strand, within AO353_25670at 5661.130 kb on - strand, within AO353_25670at 5661.130 kb on - strand, within AO353_25670at 5661.407 kb on + strand, within AO353_25670at 5661.407 kb on + strand, within AO353_25670at 5661.883 kb on - strandat 5661.883 kb on - strandat 5661.885 kb on + strandat 5661.912 kb on + strandat 5661.912 kb on + strandat 5661.912 kb on + strandat 5661.912 kb on + strandat 5661.913 kb on - strandat 5661.913 kb on - strandat 5661.967 kb on - strandat 5662.011 kb on + strandat 5662.030 kb on + strandat 5662.031 kb on - strandat 5662.031 kb on - strandat 5662.075 kb on + strandat 5662.075 kb on + strandat 5662.075 kb on + strandat 5662.075 kb on + strandat 5662.076 kb on - strandat 5662.076 kb on - strandat 5662.076 kb on - strandat 5662.076 kb on - strandat 5662.076 kb on - strandat 5662.612 kb on + strand, within AO353_25675at 5662.841 kb on - strandat 5662.910 kb on + strandat 5662.911 kb on - strandat 5662.911 kb on - strandat 5662.911 kb on - strandat 5662.911 kb on - strandat 5662.911 kb on - strandat 5662.938 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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5,660,025 + AO353_25665 0.28 +1.9
5,660,026 - AO353_25665 0.28 -1.5
5,660,181 + AO353_25665 0.42 +0.4
5,660,205 + AO353_25665 0.44 +0.8
5,660,205 + AO353_25665 0.44 +0.8
5,660,205 + AO353_25665 0.44 +0.7
5,660,205 + AO353_25665 0.44 +0.7
5,660,241 + AO353_25665 0.47 +1.0
5,660,241 + AO353_25665 0.47 -0.5
5,660,241 + AO353_25665 0.47 +0.5
5,660,241 + AO353_25665 0.47 -1.0
5,660,241 + AO353_25665 0.47 +0.4
5,660,286 + AO353_25665 0.51 -1.4
5,660,286 + AO353_25665 0.51 +0.4
5,660,287 - AO353_25665 0.52 -0.3
5,660,308 - AO353_25665 0.53 -1.1
5,660,396 - AO353_25665 0.61 -0.1
5,660,414 - AO353_25665 0.63 -1.8
5,660,561 - AO353_25665 0.76 -0.5
5,660,594 - AO353_25665 0.79 +1.7
5,661,015 + AO353_25670 0.16 +0.0
5,661,015 + AO353_25670 0.16 -2.4
5,661,015 + AO353_25670 0.16 -2.1
5,661,015 + AO353_25670 0.16 -0.1
5,661,016 - AO353_25670 0.16 -0.6
5,661,016 - AO353_25670 0.16 +0.1
5,661,016 - AO353_25670 0.16 -1.1
5,661,024 + AO353_25670 0.17 -1.4
5,661,024 + AO353_25670 0.17 -1.1
5,661,024 + AO353_25670 0.17 -1.1
5,661,025 - AO353_25670 0.17 +0.6
5,661,033 + AO353_25670 0.18 +0.9
5,661,129 + AO353_25670 0.26 +1.1
5,661,129 + AO353_25670 0.26 +0.0
5,661,129 + AO353_25670 0.26 -1.1
5,661,129 + AO353_25670 0.26 -0.5
5,661,129 + AO353_25670 0.26 -1.8
5,661,129 + AO353_25670 0.26 -1.1
5,661,130 - AO353_25670 0.26 -0.6
5,661,130 - AO353_25670 0.26 -1.0
5,661,407 + AO353_25670 0.50 +0.9
5,661,407 + AO353_25670 0.50 -2.4
5,661,883 - -0.8
5,661,883 - +0.9
5,661,885 + +1.2
5,661,912 + -0.6
5,661,912 + -1.6
5,661,912 + +0.0
5,661,912 + +1.4
5,661,913 - +0.5
5,661,913 - +1.5
5,661,967 - +0.5
5,662,011 + -0.4
5,662,030 + -1.1
5,662,031 - -1.1
5,662,031 - +0.6
5,662,075 + -0.9
5,662,075 + -0.4
5,662,075 + -0.9
5,662,075 + +1.0
5,662,076 - +0.7
5,662,076 - -1.4
5,662,076 - +1.4
5,662,076 - -0.3
5,662,076 - +0.4
5,662,612 + AO353_25675 0.70 +0.8
5,662,841 - +0.1
5,662,910 + -0.6
5,662,911 - -0.4
5,662,911 - -0.1
5,662,911 - +0.1
5,662,911 - -0.1
5,662,911 - -1.2
5,662,938 - -1.1

Or see this region's nucleotide sequence