Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23205

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23200 and AO353_23205 are separated by 78 nucleotidesAO353_23205 and AO353_23210 are separated by 385 nucleotides AO353_23200: AO353_23200 - oxidoreductase, at 5,089,632 to 5,090,801 _23200 AO353_23205: AO353_23205 - hypothetical protein, at 5,090,880 to 5,091,560 _23205 AO353_23210: AO353_23210 - hydroperoxidase, at 5,091,946 to 5,094,153 _23210 Position (kb) 5090 5091 5092Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5090.055 kb on + strand, within AO353_23200at 5090.055 kb on + strand, within AO353_23200at 5090.232 kb on + strand, within AO353_23200at 5090.232 kb on + strand, within AO353_23200at 5090.232 kb on + strand, within AO353_23200at 5090.232 kb on + strand, within AO353_23200at 5090.232 kb on + strand, within AO353_23200at 5090.232 kb on + strand, within AO353_23200at 5090.232 kb on + strand, within AO353_23200at 5090.232 kb on + strand, within AO353_23200at 5090.233 kb on - strand, within AO353_23200at 5090.233 kb on - strand, within AO353_23200at 5090.233 kb on - strand, within AO353_23200at 5090.233 kb on - strand, within AO353_23200at 5090.265 kb on + strand, within AO353_23200at 5090.265 kb on + strand, within AO353_23200at 5090.265 kb on + strand, within AO353_23200at 5090.266 kb on - strand, within AO353_23200at 5090.266 kb on - strand, within AO353_23200at 5090.266 kb on - strand, within AO353_23200at 5090.315 kb on + strand, within AO353_23200at 5090.315 kb on + strand, within AO353_23200at 5090.315 kb on + strand, within AO353_23200at 5090.315 kb on + strand, within AO353_23200at 5090.315 kb on + strand, within AO353_23200at 5090.316 kb on - strand, within AO353_23200at 5090.316 kb on - strand, within AO353_23200at 5090.316 kb on - strand, within AO353_23200at 5090.316 kb on - strand, within AO353_23200at 5090.364 kb on + strand, within AO353_23200at 5090.365 kb on - strand, within AO353_23200at 5090.365 kb on - strand, within AO353_23200at 5090.379 kb on + strand, within AO353_23200at 5090.379 kb on + strand, within AO353_23200at 5090.379 kb on + strand, within AO353_23200at 5090.379 kb on + strand, within AO353_23200at 5090.380 kb on - strand, within AO353_23200at 5090.641 kb on - strand, within AO353_23200at 5090.641 kb on - strand, within AO353_23200at 5090.641 kb on - strand, within AO353_23200at 5090.643 kb on + strand, within AO353_23200at 5090.643 kb on + strand, within AO353_23200at 5090.644 kb on - strand, within AO353_23200at 5090.644 kb on - strand, within AO353_23200at 5090.796 kb on + strandat 5090.796 kb on + strandat 5090.845 kb on + strandat 5090.846 kb on - strandat 5090.846 kb on - strandat 5090.861 kb on - strandat 5090.861 kb on - strandat 5090.868 kb on + strandat 5090.868 kb on + strandat 5090.868 kb on + strandat 5090.869 kb on - strandat 5090.934 kb on + strandat 5090.934 kb on + strandat 5090.934 kb on + strandat 5090.934 kb on + strandat 5090.935 kb on - strandat 5090.935 kb on - strandat 5090.935 kb on - strandat 5090.935 kb on - strandat 5090.935 kb on - strandat 5091.045 kb on + strand, within AO353_23205at 5091.046 kb on - strand, within AO353_23205at 5091.047 kb on + strand, within AO353_23205at 5091.047 kb on + strand, within AO353_23205at 5091.047 kb on + strandat 5091.047 kb on + strand, within AO353_23205at 5091.047 kb on + strand, within AO353_23205at 5091.047 kb on + strand, within AO353_23205at 5091.048 kb on - strand, within AO353_23205at 5091.048 kb on - strand, within AO353_23205at 5091.048 kb on - strand, within AO353_23205at 5091.048 kb on - strand, within AO353_23205at 5091.048 kb on - strand, within AO353_23205at 5091.048 kb on - strand, within AO353_23205at 5091.048 kb on - strand, within AO353_23205at 5091.079 kb on - strand, within AO353_23205at 5091.079 kb on - strand, within AO353_23205at 5091.079 kb on - strand, within AO353_23205at 5091.120 kb on + strand, within AO353_23205at 5091.121 kb on - strand, within AO353_23205at 5091.121 kb on - strand, within AO353_23205at 5091.166 kb on - strand, within AO353_23205at 5091.200 kb on - strand, within AO353_23205at 5091.262 kb on + strand, within AO353_23205at 5091.263 kb on - strand, within AO353_23205at 5091.314 kb on + strand, within AO353_23205at 5091.314 kb on + strand, within AO353_23205at 5091.314 kb on + strand, within AO353_23205at 5091.314 kb on + strand, within AO353_23205at 5091.337 kb on + strand, within AO353_23205at 5091.383 kb on - strand, within AO353_23205at 5091.405 kb on + strand, within AO353_23205at 5091.405 kb on + strand, within AO353_23205at 5091.406 kb on - strand, within AO353_23205at 5091.406 kb on - strand, within AO353_23205at 5091.554 kb on + strandat 5091.554 kb on + strandat 5091.554 kb on + strandat 5091.554 kb on + strandat 5091.554 kb on + strandat 5091.554 kb on + strandat 5091.554 kb on + strandat 5091.554 kb on + strandat 5091.554 kb on + strandat 5091.554 kb on + strandat 5091.555 kb on - strandat 5091.555 kb on - strandat 5091.555 kb on - strandat 5091.555 kb on - strandat 5091.586 kb on + strandat 5091.586 kb on + strandat 5091.586 kb on + strandat 5091.586 kb on + strandat 5091.586 kb on + strandat 5091.586 kb on + strandat 5091.587 kb on - strandat 5091.587 kb on - strandat 5091.604 kb on + strandat 5091.605 kb on - strandat 5091.626 kb on + strandat 5091.626 kb on + strandat 5091.627 kb on - strandat 5091.634 kb on + strandat 5091.635 kb on - strandat 5091.635 kb on - strandat 5091.635 kb on - strandat 5091.635 kb on - strandat 5091.662 kb on + strandat 5091.662 kb on + strandat 5091.663 kb on - strandat 5091.663 kb on - strandat 5091.663 kb on - strandat 5091.663 kb on - strandat 5091.665 kb on + strandat 5091.665 kb on + strandat 5091.666 kb on - strandat 5091.666 kb on - strandat 5091.678 kb on + strandat 5091.678 kb on + strandat 5091.679 kb on - strandat 5091.679 kb on - strandat 5091.679 kb on - strandat 5091.680 kb on + strandat 5091.680 kb on + strandat 5091.733 kb on + strandat 5091.734 kb on - strandat 5091.734 kb on - strandat 5091.740 kb on + strandat 5091.740 kb on + strandat 5091.741 kb on - strandat 5091.746 kb on + strandat 5091.746 kb on + strandat 5091.747 kb on - strandat 5091.747 kb on - strandat 5091.747 kb on - strandat 5091.747 kb on - strandat 5091.759 kb on + strandat 5091.759 kb on + strandat 5091.759 kb on + strandat 5091.759 kb on + strandat 5091.760 kb on - strandat 5091.760 kb on - strandat 5091.760 kb on - strandat 5091.762 kb on + strandat 5091.762 kb on + strandat 5091.762 kb on + strandat 5091.763 kb on - strandat 5091.763 kb on - strandat 5091.863 kb on + strandat 5091.863 kb on + strandat 5091.864 kb on - strandat 5091.864 kb on - strandat 5091.864 kb on - strandat 5091.864 kb on - strandat 5091.864 kb on - strandat 5091.936 kb on + strandat 5092.090 kb on + strandat 5092.090 kb on + strandat 5092.090 kb on + strandat 5092.207 kb on - strand, within AO353_23210at 5092.207 kb on - strand, within AO353_23210at 5092.237 kb on + strand, within AO353_23210at 5092.238 kb on - strand, within AO353_23210at 5092.363 kb on + strand, within AO353_23210at 5092.363 kb on + strand, within AO353_23210at 5092.364 kb on - strand, within AO353_23210at 5092.364 kb on - strand, within AO353_23210at 5092.364 kb on - strand, within AO353_23210at 5092.371 kb on + strand, within AO353_23210at 5092.492 kb on + strand, within AO353_23210at 5092.493 kb on - strand, within AO353_23210at 5092.554 kb on + strand, within AO353_23210at 5092.555 kb on - strand, within AO353_23210

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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5,090,055 + AO353_23200 0.36 -0.0
5,090,055 + AO353_23200 0.36 -0.7
5,090,232 + AO353_23200 0.51 -1.5
5,090,232 + AO353_23200 0.51 -2.2
5,090,232 + AO353_23200 0.51 +0.9
5,090,232 + AO353_23200 0.51 -0.6
5,090,232 + AO353_23200 0.51 +0.2
5,090,232 + AO353_23200 0.51 -0.8
5,090,232 + AO353_23200 0.51 -0.8
5,090,232 + AO353_23200 0.51 -2.1
5,090,233 - AO353_23200 0.51 +1.7
5,090,233 - AO353_23200 0.51 +0.5
5,090,233 - AO353_23200 0.51 +0.3
5,090,233 - AO353_23200 0.51 -0.5
5,090,265 + AO353_23200 0.54 +0.8
5,090,265 + AO353_23200 0.54 +1.2
5,090,265 + AO353_23200 0.54 +0.2
5,090,266 - AO353_23200 0.54 -0.2
5,090,266 - AO353_23200 0.54 +0.4
5,090,266 - AO353_23200 0.54 +0.2
5,090,315 + AO353_23200 0.58 +0.8
5,090,315 + AO353_23200 0.58 -0.7
5,090,315 + AO353_23200 0.58 +0.3
5,090,315 + AO353_23200 0.58 -0.0
5,090,315 + AO353_23200 0.58 -1.3
5,090,316 - AO353_23200 0.58 -0.0
5,090,316 - AO353_23200 0.58 -0.5
5,090,316 - AO353_23200 0.58 +1.0
5,090,316 - AO353_23200 0.58 +0.9
5,090,364 + AO353_23200 0.63 -0.6
5,090,365 - AO353_23200 0.63 -1.3
5,090,365 - AO353_23200 0.63 -0.5
5,090,379 + AO353_23200 0.64 +0.0
5,090,379 + AO353_23200 0.64 -0.9
5,090,379 + AO353_23200 0.64 +0.7
5,090,379 + AO353_23200 0.64 -0.3
5,090,380 - AO353_23200 0.64 +0.1
5,090,641 - AO353_23200 0.86 -0.1
5,090,641 - AO353_23200 0.86 +0.6
5,090,641 - AO353_23200 0.86 -1.9
5,090,643 + AO353_23200 0.86 +0.8
5,090,643 + AO353_23200 0.86 +0.7
5,090,644 - AO353_23200 0.86 -1.1
5,090,644 - AO353_23200 0.86 -0.3
5,090,796 + -1.9
5,090,796 + -0.3
5,090,845 + +0.4
5,090,846 - +0.7
5,090,846 - -1.0
5,090,861 - -0.2
5,090,861 - -0.0
5,090,868 + +0.2
5,090,868 + +1.7
5,090,868 + -1.6
5,090,869 - -0.8
5,090,934 + -0.3
5,090,934 + -0.1
5,090,934 + -0.1
5,090,934 + +0.3
5,090,935 - +0.8
5,090,935 - -1.3
5,090,935 - +0.6
5,090,935 - +0.1
5,090,935 - +0.1
5,091,045 + AO353_23205 0.24 -1.3
5,091,046 - AO353_23205 0.24 +0.2
5,091,047 + AO353_23205 0.25 -0.5
5,091,047 + AO353_23205 0.25 +1.0
5,091,047 + +1.0
5,091,047 + AO353_23205 0.25 -0.1
5,091,047 + AO353_23205 0.25 +0.2
5,091,047 + AO353_23205 0.25 +1.3
5,091,048 - AO353_23205 0.25 -0.3
5,091,048 - AO353_23205 0.25 +0.5
5,091,048 - AO353_23205 0.25 -2.0
5,091,048 - AO353_23205 0.25 -1.5
5,091,048 - AO353_23205 0.25 -0.3
5,091,048 - AO353_23205 0.25 -0.2
5,091,048 - AO353_23205 0.25 -0.0
5,091,079 - AO353_23205 0.29 -0.3
5,091,079 - AO353_23205 0.29 +0.9
5,091,079 - AO353_23205 0.29 +0.3
5,091,120 + AO353_23205 0.35 -0.3
5,091,121 - AO353_23205 0.35 -1.1
5,091,121 - AO353_23205 0.35 -1.1
5,091,166 - AO353_23205 0.42 -1.1
5,091,200 - AO353_23205 0.47 -0.9
5,091,262 + AO353_23205 0.56 -0.4
5,091,263 - AO353_23205 0.56 +1.3
5,091,314 + AO353_23205 0.64 +0.4
5,091,314 + AO353_23205 0.64 -1.3
5,091,314 + AO353_23205 0.64 -0.9
5,091,314 + AO353_23205 0.64 -0.6
5,091,337 + AO353_23205 0.67 +0.1
5,091,383 - AO353_23205 0.74 -1.0
5,091,405 + AO353_23205 0.77 -1.0
5,091,405 + AO353_23205 0.77 +1.2
5,091,406 - AO353_23205 0.77 -1.0
5,091,406 - AO353_23205 0.77 -0.0
5,091,554 + -0.1
5,091,554 + -0.4
5,091,554 + -0.0
5,091,554 + -0.2
5,091,554 + -0.2
5,091,554 + -0.3
5,091,554 + +0.6
5,091,554 + +0.1
5,091,554 + -0.1
5,091,554 + +0.1
5,091,555 - -0.7
5,091,555 - -0.3
5,091,555 - -0.4
5,091,555 - -2.0
5,091,586 + +0.7
5,091,586 + -1.9
5,091,586 + -0.8
5,091,586 + +0.6
5,091,586 + +0.6
5,091,586 + +1.5
5,091,587 - -1.2
5,091,587 - +0.9
5,091,604 + -1.1
5,091,605 - +0.2
5,091,626 + -0.6
5,091,626 + +2.2
5,091,627 - +0.2
5,091,634 + +1.6
5,091,635 - +0.3
5,091,635 - +0.5
5,091,635 - +0.2
5,091,635 - -0.8
5,091,662 + -0.8
5,091,662 + -0.6
5,091,663 - +0.3
5,091,663 - +0.5
5,091,663 - -1.1
5,091,663 - +0.4
5,091,665 + +1.8
5,091,665 + -0.0
5,091,666 - -0.6
5,091,666 - +1.5
5,091,678 + +0.2
5,091,678 + -1.0
5,091,679 - -0.5
5,091,679 - +0.1
5,091,679 - +1.2
5,091,680 + +0.0
5,091,680 + -0.6
5,091,733 + -3.2
5,091,734 - +1.0
5,091,734 - +0.2
5,091,740 + +1.2
5,091,740 + -0.4
5,091,741 - +0.3
5,091,746 + -0.6
5,091,746 + +0.2
5,091,747 - +0.3
5,091,747 - -0.2
5,091,747 - -0.8
5,091,747 - -0.3
5,091,759 + -0.0
5,091,759 + -1.0
5,091,759 + +0.4
5,091,759 + -0.1
5,091,760 - -1.1
5,091,760 - +0.3
5,091,760 - -0.7
5,091,762 + -1.3
5,091,762 + -0.8
5,091,762 + -0.0
5,091,763 - -2.6
5,091,763 - +0.1
5,091,863 + +0.4
5,091,863 + +1.7
5,091,864 - +0.3
5,091,864 - +0.2
5,091,864 - -0.3
5,091,864 - +0.7
5,091,864 - -0.5
5,091,936 + +1.7
5,092,090 + -0.3
5,092,090 + -1.3
5,092,090 + +0.7
5,092,207 - AO353_23210 0.12 -0.8
5,092,207 - AO353_23210 0.12 +0.6
5,092,237 + AO353_23210 0.13 +0.3
5,092,238 - AO353_23210 0.13 +1.5
5,092,363 + AO353_23210 0.19 +1.8
5,092,363 + AO353_23210 0.19 +1.0
5,092,364 - AO353_23210 0.19 -1.8
5,092,364 - AO353_23210 0.19 +0.4
5,092,364 - AO353_23210 0.19 -1.6
5,092,371 + AO353_23210 0.19 +0.2
5,092,492 + AO353_23210 0.25 +0.3
5,092,493 - AO353_23210 0.25 -0.2
5,092,554 + AO353_23210 0.28 -0.2
5,092,555 - AO353_23210 0.28 -0.2

Or see this region's nucleotide sequence