Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23165

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23155 and AO353_23160 overlap by 10 nucleotidesAO353_23160 and AO353_23165 are separated by 4 nucleotidesAO353_23165 and AO353_23170 are separated by 13 nucleotidesAO353_23170 and AO353_23175 overlap by 1 nucleotides AO353_23155: AO353_23155 - IclR family transcriptional regulator, at 5,081,390 to 5,082,232 _23155 AO353_23160: AO353_23160 - hydrolase, at 5,082,223 to 5,083,107 _23160 AO353_23165: AO353_23165 - cupin, at 5,083,112 to 5,083,675 _23165 AO353_23170: AO353_23170 - short-chain dehydrogenase, at 5,083,689 to 5,084,453 _23170 AO353_23175: AO353_23175 - ABC transporter permease, at 5,084,453 to 5,085,229 _23175 Position (kb) 5083 5084Strain fitness (log2 ratio) -2 -1 0 1 2at 5082.186 kb on + strandat 5082.186 kb on + strandat 5082.186 kb on + strandat 5082.186 kb on + strandat 5082.186 kb on + strandat 5082.186 kb on + strandat 5082.186 kb on + strandat 5082.186 kb on + strandat 5082.186 kb on + strandat 5082.186 kb on + strandat 5082.186 kb on + strandat 5082.186 kb on + strandat 5082.187 kb on - strandat 5082.187 kb on - strandat 5082.187 kb on - strandat 5082.187 kb on - strandat 5082.187 kb on - strandat 5082.187 kb on - strandat 5082.187 kb on - strandat 5082.187 kb on - strandat 5082.227 kb on - strandat 5082.466 kb on + strand, within AO353_23160at 5082.466 kb on + strand, within AO353_23160at 5082.466 kb on + strand, within AO353_23160at 5082.466 kb on + strand, within AO353_23160at 5082.466 kb on + strand, within AO353_23160at 5082.466 kb on + strand, within AO353_23160at 5082.466 kb on + strand, within AO353_23160at 5082.467 kb on - strand, within AO353_23160at 5082.467 kb on - strand, within AO353_23160at 5082.558 kb on - strand, within AO353_23160at 5082.558 kb on - strand, within AO353_23160at 5082.866 kb on + strand, within AO353_23160at 5082.925 kb on + strand, within AO353_23160at 5083.113 kb on + strandat 5083.474 kb on - strand, within AO353_23165at 5083.474 kb on - strand, within AO353_23165at 5083.474 kb on - strand, within AO353_23165at 5083.474 kb on - strand, within AO353_23165at 5083.474 kb on - strand, within AO353_23165at 5083.474 kb on - strand, within AO353_23165at 5083.507 kb on - strand, within AO353_23165at 5083.539 kb on + strand, within AO353_23165at 5083.539 kb on + strand, within AO353_23165at 5083.664 kb on + strandat 5083.664 kb on + strandat 5083.664 kb on + strandat 5083.665 kb on - strandat 5083.665 kb on - strandat 5083.665 kb on - strandat 5083.669 kb on + strandat 5083.669 kb on + strandat 5083.669 kb on + strandat 5083.670 kb on - strandat 5083.670 kb on - strandat 5083.670 kb on - strandat 5083.670 kb on - strandat 5083.670 kb on - strandat 5083.670 kb on - strandat 5083.670 kb on - strandat 5083.699 kb on - strandat 5083.825 kb on + strand, within AO353_23170at 5083.825 kb on + strand, within AO353_23170at 5083.852 kb on + strand, within AO353_23170at 5083.852 kb on + strand, within AO353_23170at 5083.852 kb on + strand, within AO353_23170at 5083.852 kb on + strand, within AO353_23170at 5083.852 kb on + strand, within AO353_23170at 5083.853 kb on - strand, within AO353_23170at 5083.973 kb on - strand, within AO353_23170at 5084.383 kb on + strandat 5084.484 kb on + strandat 5084.484 kb on + strandat 5084.484 kb on + strandat 5084.485 kb on - strandat 5084.485 kb on - strandat 5084.485 kb on - strandat 5084.531 kb on + strand, within AO353_23175at 5084.531 kb on + strand, within AO353_23175at 5084.531 kb on + strand, within AO353_23175at 5084.532 kb on - strand, within AO353_23175at 5084.532 kb on - strand, within AO353_23175at 5084.532 kb on - strand, within AO353_23175

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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5,082,186 + +0.6
5,082,186 + +0.3
5,082,186 + -0.1
5,082,186 + +0.9
5,082,186 + +0.2
5,082,186 + -0.9
5,082,186 + +2.0
5,082,186 + -0.3
5,082,186 + +0.8
5,082,186 + -0.3
5,082,186 + +1.2
5,082,186 + -1.0
5,082,187 - +1.4
5,082,187 - -0.7
5,082,187 - +0.1
5,082,187 - -1.0
5,082,187 - -0.3
5,082,187 - +1.0
5,082,187 - -1.1
5,082,187 - +0.6
5,082,227 - +0.9
5,082,466 + AO353_23160 0.27 -0.2
5,082,466 + AO353_23160 0.27 +0.5
5,082,466 + AO353_23160 0.27 -1.3
5,082,466 + AO353_23160 0.27 -1.6
5,082,466 + AO353_23160 0.27 -0.3
5,082,466 + AO353_23160 0.27 +0.3
5,082,466 + AO353_23160 0.27 -2.0
5,082,467 - AO353_23160 0.28 -0.3
5,082,467 - AO353_23160 0.28 -0.5
5,082,558 - AO353_23160 0.38 -1.0
5,082,558 - AO353_23160 0.38 -0.1
5,082,866 + AO353_23160 0.73 +0.7
5,082,925 + AO353_23160 0.79 +0.1
5,083,113 + -1.6
5,083,474 - AO353_23165 0.64 +1.6
5,083,474 - AO353_23165 0.64 -1.4
5,083,474 - AO353_23165 0.64 -0.5
5,083,474 - AO353_23165 0.64 -1.1
5,083,474 - AO353_23165 0.64 -0.3
5,083,474 - AO353_23165 0.64 -1.8
5,083,507 - AO353_23165 0.70 -0.9
5,083,539 + AO353_23165 0.76 -1.2
5,083,539 + AO353_23165 0.76 -0.0
5,083,664 + +1.1
5,083,664 + -1.1
5,083,664 + -0.0
5,083,665 - +1.0
5,083,665 - +1.0
5,083,665 - +0.2
5,083,669 + +0.7
5,083,669 + +0.6
5,083,669 + +0.1
5,083,670 - +0.5
5,083,670 - -0.5
5,083,670 - -1.5
5,083,670 - +0.3
5,083,670 - -1.0
5,083,670 - -0.4
5,083,670 - -0.6
5,083,699 - +1.2
5,083,825 + AO353_23170 0.18 +1.6
5,083,825 + AO353_23170 0.18 -0.2
5,083,852 + AO353_23170 0.21 +0.4
5,083,852 + AO353_23170 0.21 -0.8
5,083,852 + AO353_23170 0.21 -0.5
5,083,852 + AO353_23170 0.21 -0.3
5,083,852 + AO353_23170 0.21 -0.3
5,083,853 - AO353_23170 0.21 -1.5
5,083,973 - AO353_23170 0.37 +0.1
5,084,383 + -0.6
5,084,484 + -1.0
5,084,484 + -1.4
5,084,484 + -1.1
5,084,485 - +0.5
5,084,485 - +0.1
5,084,485 - +0.6
5,084,531 + AO353_23175 0.10 -1.0
5,084,531 + AO353_23175 0.10 -1.2
5,084,531 + AO353_23175 0.10 +0.6
5,084,532 - AO353_23175 0.10 -1.9
5,084,532 - AO353_23175 0.10 +0.2
5,084,532 - AO353_23175 0.10 +0.2

Or see this region's nucleotide sequence