Experiment: Cobalt chloride 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_21010 and AO353_21015 are separated by 92 nucleotides AO353_21015 and AO353_21020 overlap by 4 nucleotides AO353_21020 and AO353_21025 overlap by 4 nucleotides AO353_21025 and AO353_21030 overlap by 4 nucleotides
AO353_21010: AO353_21010 - transposase, at 4,591,954 to 4,593,006
_21010
AO353_21015: AO353_21015 - multidrug DMT transporter permease, at 4,593,099 to 4,594,430
_21015
AO353_21020: AO353_21020 - disulfide bond formation protein DsbA, at 4,594,427 to 4,595,092
_21020
AO353_21025: AO353_21025 - (2Fe-2S)-binding protein, at 4,595,089 to 4,595,415
_21025
AO353_21030: AO353_21030 - hypothetical protein, at 4,595,412 to 4,596,422
_21030
Position (kb)
4593
4594
4595 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4592.104 kb on + strand, within AO353_21010 at 4592.104 kb on + strand, within AO353_21010 at 4592.104 kb on + strand, within AO353_21010 at 4592.105 kb on - strand, within AO353_21010 at 4592.105 kb on - strand, within AO353_21010 at 4592.105 kb on - strand, within AO353_21010 at 4592.298 kb on + strand, within AO353_21010 at 4592.399 kb on - strand, within AO353_21010 at 4592.432 kb on - strand at 4592.432 kb on - strand, within AO353_21010 at 4592.432 kb on - strand, within AO353_21010 at 4592.459 kb on + strand, within AO353_21010 at 4592.587 kb on + strand, within AO353_21010 at 4592.587 kb on + strand, within AO353_21010 at 4592.587 kb on + strand, within AO353_21010 at 4592.587 kb on + strand, within AO353_21010 at 4592.587 kb on + strand, within AO353_21010 at 4592.588 kb on - strand, within AO353_21010 at 4592.588 kb on - strand, within AO353_21010 at 4592.588 kb on - strand, within AO353_21010 at 4592.588 kb on - strand, within AO353_21010 at 4592.588 kb on - strand, within AO353_21010 at 4592.588 kb on - strand, within AO353_21010 at 4592.902 kb on + strand at 4592.902 kb on + strand at 4592.902 kb on + strand at 4592.902 kb on + strand at 4592.902 kb on + strand at 4592.903 kb on - strand at 4592.903 kb on - strand at 4592.903 kb on - strand at 4592.903 kb on - strand at 4592.920 kb on + strand at 4592.929 kb on - strand at 4593.074 kb on + strand at 4593.074 kb on + strand at 4593.075 kb on - strand at 4593.075 kb on - strand at 4593.075 kb on - strand at 4593.075 kb on - strand at 4593.150 kb on - strand at 4593.162 kb on + strand at 4593.162 kb on + strand at 4593.163 kb on - strand at 4593.210 kb on + strand at 4593.210 kb on + strand at 4593.210 kb on + strand at 4593.210 kb on + strand at 4593.210 kb on + strand at 4593.210 kb on + strand at 4593.211 kb on - strand at 4593.211 kb on - strand at 4593.211 kb on - strand at 4593.211 kb on - strand at 4593.211 kb on - strand at 4593.211 kb on - strand at 4593.449 kb on + strand, within AO353_21015 at 4593.449 kb on + strand, within AO353_21015 at 4593.450 kb on - strand, within AO353_21015 at 4593.450 kb on - strand, within AO353_21015 at 4593.450 kb on - strand at 4593.450 kb on - strand, within AO353_21015 at 4593.450 kb on - strand, within AO353_21015 at 4593.450 kb on - strand, within AO353_21015 at 4593.450 kb on - strand, within AO353_21015 at 4593.450 kb on - strand, within AO353_21015 at 4593.450 kb on - strand, within AO353_21015 at 4593.450 kb on - strand, within AO353_21015 at 4593.450 kb on - strand, within AO353_21015 at 4593.450 kb on - strand, within AO353_21015 at 4593.450 kb on - strand, within AO353_21015 at 4593.451 kb on + strand, within AO353_21015 at 4593.451 kb on + strand, within AO353_21015 at 4593.451 kb on + strand, within AO353_21015 at 4593.452 kb on - strand, within AO353_21015 at 4593.486 kb on + strand, within AO353_21015 at 4593.486 kb on + strand, within AO353_21015 at 4593.610 kb on + strand, within AO353_21015 at 4593.611 kb on - strand, within AO353_21015 at 4593.611 kb on - strand, within AO353_21015 at 4593.777 kb on - strand, within AO353_21015 at 4593.777 kb on - strand, within AO353_21015 at 4593.777 kb on - strand, within AO353_21015 at 4593.810 kb on + strand, within AO353_21015 at 4593.810 kb on + strand, within AO353_21015 at 4593.810 kb on + strand, within AO353_21015 at 4593.811 kb on - strand, within AO353_21015 at 4593.811 kb on - strand, within AO353_21015 at 4593.811 kb on - strand, within AO353_21015 at 4593.811 kb on - strand, within AO353_21015 at 4593.811 kb on - strand, within AO353_21015 at 4593.811 kb on - strand, within AO353_21015 at 4593.870 kb on + strand, within AO353_21015 at 4593.870 kb on + strand, within AO353_21015 at 4593.870 kb on + strand, within AO353_21015 at 4593.871 kb on - strand, within AO353_21015 at 4593.871 kb on - strand, within AO353_21015 at 4593.871 kb on - strand, within AO353_21015 at 4593.871 kb on - strand, within AO353_21015 at 4593.871 kb on - strand, within AO353_21015 at 4593.871 kb on - strand, within AO353_21015 at 4593.882 kb on + strand, within AO353_21015 at 4593.882 kb on + strand, within AO353_21015 at 4593.883 kb on - strand, within AO353_21015 at 4593.883 kb on - strand, within AO353_21015 at 4593.883 kb on - strand, within AO353_21015 at 4593.883 kb on - strand, within AO353_21015 at 4593.883 kb on - strand, within AO353_21015 at 4593.885 kb on + strand, within AO353_21015 at 4593.885 kb on + strand, within AO353_21015 at 4593.885 kb on + strand, within AO353_21015 at 4593.885 kb on + strand, within AO353_21015 at 4594.037 kb on + strand, within AO353_21015 at 4594.038 kb on - strand, within AO353_21015 at 4594.217 kb on + strand, within AO353_21015 at 4594.217 kb on + strand, within AO353_21015 at 4594.217 kb on + strand, within AO353_21015 at 4594.217 kb on + strand, within AO353_21015 at 4594.218 kb on - strand, within AO353_21015 at 4594.218 kb on - strand, within AO353_21015 at 4594.218 kb on - strand, within AO353_21015 at 4594.218 kb on - strand, within AO353_21015 at 4594.218 kb on - strand, within AO353_21015 at 4594.218 kb on - strand, within AO353_21015 at 4594.218 kb on - strand, within AO353_21015 at 4594.336 kb on - strand at 4594.465 kb on + strand at 4594.466 kb on - strand at 4594.594 kb on - strand, within AO353_21020 at 4594.594 kb on - strand, within AO353_21020 at 4594.619 kb on + strand, within AO353_21020 at 4594.620 kb on - strand, within AO353_21020 at 4594.620 kb on - strand, within AO353_21020 at 4594.620 kb on - strand, within AO353_21020 at 4594.735 kb on + strand, within AO353_21020 at 4594.735 kb on + strand, within AO353_21020 at 4594.736 kb on - strand, within AO353_21020 at 4594.826 kb on + strand, within AO353_21020 at 4594.826 kb on + strand, within AO353_21020 at 4594.827 kb on - strand, within AO353_21020 at 4594.827 kb on - strand, within AO353_21020 at 4594.827 kb on - strand, within AO353_21020 at 4594.835 kb on + strand, within AO353_21020 at 4594.940 kb on + strand, within AO353_21020 at 4594.940 kb on + strand, within AO353_21020 at 4594.940 kb on + strand, within AO353_21020 at 4594.940 kb on + strand, within AO353_21020 at 4594.941 kb on - strand, within AO353_21020 at 4594.941 kb on - strand, within AO353_21020 at 4595.031 kb on + strand at 4595.031 kb on + strand at 4595.031 kb on + strand at 4595.031 kb on + strand at 4595.032 kb on - strand at 4595.032 kb on - strand at 4595.032 kb on - strand at 4595.032 kb on - strand at 4595.032 kb on - strand at 4595.032 kb on - strand at 4595.032 kb on - strand at 4595.032 kb on - strand at 4595.108 kb on + strand at 4595.109 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM remove 4,592,104 + AO353_21010 0.14 +1.4 4,592,104 + AO353_21010 0.14 -0.2 4,592,104 + AO353_21010 0.14 -0.0 4,592,105 - AO353_21010 0.14 +0.2 4,592,105 - AO353_21010 0.14 +1.6 4,592,105 - AO353_21010 0.14 +0.0 4,592,298 + AO353_21010 0.33 +1.5 4,592,399 - AO353_21010 0.42 -0.3 4,592,432 - -0.5 4,592,432 - AO353_21010 0.45 +0.4 4,592,432 - AO353_21010 0.45 +0.9 4,592,459 + AO353_21010 0.48 -0.1 4,592,587 + AO353_21010 0.60 -0.2 4,592,587 + AO353_21010 0.60 +0.6 4,592,587 + AO353_21010 0.60 -0.4 4,592,587 + AO353_21010 0.60 +0.5 4,592,587 + AO353_21010 0.60 -1.6 4,592,588 - AO353_21010 0.60 +0.5 4,592,588 - AO353_21010 0.60 +1.0 4,592,588 - AO353_21010 0.60 +0.7 4,592,588 - AO353_21010 0.60 +0.2 4,592,588 - AO353_21010 0.60 -1.7 4,592,588 - AO353_21010 0.60 +1.4 4,592,902 + -0.8 4,592,902 + +1.9 4,592,902 + -0.1 4,592,902 + -1.2 4,592,902 + -1.1 4,592,903 - -0.7 4,592,903 - -0.4 4,592,903 - +0.2 4,592,903 - +0.0 4,592,920 + +0.0 4,592,929 - -0.1 4,593,074 + -0.1 4,593,074 + -0.8 4,593,075 - -1.4 4,593,075 - +0.5 4,593,075 - +0.5 4,593,075 - +0.5 4,593,150 - -0.9 4,593,162 + -0.7 4,593,162 + +1.3 4,593,163 - +0.8 4,593,210 + -0.1 4,593,210 + -1.2 4,593,210 + +0.0 4,593,210 + -1.1 4,593,210 + +0.3 4,593,210 + +0.8 4,593,211 - +0.8 4,593,211 - -1.8 4,593,211 - +0.3 4,593,211 - +0.1 4,593,211 - +0.7 4,593,211 - +0.4 4,593,449 + AO353_21015 0.26 +0.5 4,593,449 + AO353_21015 0.26 +0.2 4,593,450 - AO353_21015 0.26 -0.5 4,593,450 - AO353_21015 0.26 -2.1 4,593,450 - +0.8 4,593,450 - AO353_21015 0.26 -0.7 4,593,450 - AO353_21015 0.26 -0.1 4,593,450 - AO353_21015 0.26 +0.7 4,593,450 - AO353_21015 0.26 +1.0 4,593,450 - AO353_21015 0.26 +1.1 4,593,450 - AO353_21015 0.26 +0.7 4,593,450 - AO353_21015 0.26 -0.8 4,593,450 - AO353_21015 0.26 -0.1 4,593,450 - AO353_21015 0.26 +0.3 4,593,450 - AO353_21015 0.26 +0.4 4,593,451 + AO353_21015 0.26 -0.2 4,593,451 + AO353_21015 0.26 -0.5 4,593,451 + AO353_21015 0.26 +0.6 4,593,452 - AO353_21015 0.27 +1.0 4,593,486 + AO353_21015 0.29 +1.4 4,593,486 + AO353_21015 0.29 -0.2 4,593,610 + AO353_21015 0.38 -0.8 4,593,611 - AO353_21015 0.38 +0.3 4,593,611 - AO353_21015 0.38 -1.4 4,593,777 - AO353_21015 0.51 +0.6 4,593,777 - AO353_21015 0.51 -2.1 4,593,777 - AO353_21015 0.51 +0.8 4,593,810 + AO353_21015 0.53 -0.1 4,593,810 + AO353_21015 0.53 -2.1 4,593,810 + AO353_21015 0.53 +0.8 4,593,811 - AO353_21015 0.53 -0.2 4,593,811 - AO353_21015 0.53 +0.2 4,593,811 - AO353_21015 0.53 +2.8 4,593,811 - AO353_21015 0.53 +2.1 4,593,811 - AO353_21015 0.53 +0.7 4,593,811 - AO353_21015 0.53 -1.0 4,593,870 + AO353_21015 0.58 -0.7 4,593,870 + AO353_21015 0.58 -1.4 4,593,870 + AO353_21015 0.58 -2.0 4,593,871 - AO353_21015 0.58 +3.8 4,593,871 - AO353_21015 0.58 -0.0 4,593,871 - AO353_21015 0.58 -0.0 4,593,871 - AO353_21015 0.58 -0.3 4,593,871 - AO353_21015 0.58 +0.8 4,593,871 - AO353_21015 0.58 -0.2 4,593,882 + AO353_21015 0.59 +1.1 4,593,882 + AO353_21015 0.59 -0.7 4,593,883 - AO353_21015 0.59 -0.5 4,593,883 - AO353_21015 0.59 +1.4 4,593,883 - AO353_21015 0.59 +0.5 4,593,883 - AO353_21015 0.59 -1.5 4,593,883 - AO353_21015 0.59 -0.3 4,593,885 + AO353_21015 0.59 +1.0 4,593,885 + AO353_21015 0.59 +0.3 4,593,885 + AO353_21015 0.59 +0.3 4,593,885 + AO353_21015 0.59 -0.5 4,594,037 + AO353_21015 0.70 -0.2 4,594,038 - AO353_21015 0.70 -0.5 4,594,217 + AO353_21015 0.84 +0.2 4,594,217 + AO353_21015 0.84 -0.4 4,594,217 + AO353_21015 0.84 +1.7 4,594,217 + AO353_21015 0.84 +0.8 4,594,218 - AO353_21015 0.84 +1.4 4,594,218 - AO353_21015 0.84 -0.8 4,594,218 - AO353_21015 0.84 -0.5 4,594,218 - AO353_21015 0.84 -1.9 4,594,218 - AO353_21015 0.84 -2.0 4,594,218 - AO353_21015 0.84 -0.4 4,594,218 - AO353_21015 0.84 -0.2 4,594,336 - -1.7 4,594,465 + -0.1 4,594,466 - +2.1 4,594,594 - AO353_21020 0.25 +0.5 4,594,594 - AO353_21020 0.25 +1.0 4,594,619 + AO353_21020 0.29 +0.6 4,594,620 - AO353_21020 0.29 +0.2 4,594,620 - AO353_21020 0.29 +1.3 4,594,620 - AO353_21020 0.29 +2.1 4,594,735 + AO353_21020 0.46 +0.3 4,594,735 + AO353_21020 0.46 +2.4 4,594,736 - AO353_21020 0.46 +1.2 4,594,826 + AO353_21020 0.60 -0.2 4,594,826 + AO353_21020 0.60 -0.6 4,594,827 - AO353_21020 0.60 -0.9 4,594,827 - AO353_21020 0.60 +0.1 4,594,827 - AO353_21020 0.60 -0.6 4,594,835 + AO353_21020 0.61 +0.9 4,594,940 + AO353_21020 0.77 +0.6 4,594,940 + AO353_21020 0.77 -1.4 4,594,940 + AO353_21020 0.77 +1.3 4,594,940 + AO353_21020 0.77 -0.2 4,594,941 - AO353_21020 0.77 -0.2 4,594,941 - AO353_21020 0.77 +0.4 4,595,031 + +0.2 4,595,031 + +1.9 4,595,031 + +0.3 4,595,031 + -2.2 4,595,032 - -1.6 4,595,032 - +0.1 4,595,032 - +1.2 4,595,032 - -0.4 4,595,032 - -0.7 4,595,032 - +1.3 4,595,032 - -1.2 4,595,032 - -1.6 4,595,108 + +0.1 4,595,109 - -0.3
Or see this region's nucleotide sequence