Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20145

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_20140 and AO353_20145 are separated by 127 nucleotidesAO353_20145 and AO353_20150 are separated by 275 nucleotidesAO353_20150 and AO353_20155 are separated by 32 nucleotidesAO353_20155 and AO353_20160 are separated by 58 nucleotidesAO353_20160 and AO353_20165 are separated by 77 nucleotides AO353_20140: AO353_20140 - hypothetical protein, at 4,429,785 to 4,430,177 _20140 AO353_20145: AO353_20145 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase, at 4,430,305 to 4,431,159 _20145 AO353_20150: AO353_20150 - tRNA-Arg, at 4,431,435 to 4,431,511 _20150 AO353_20155: AO353_20155 - tRNA-His, at 4,431,544 to 4,431,619 _20155 AO353_20160: AO353_20160 - tRNA-Leu, at 4,431,678 to 4,431,762 _20160 AO353_20165: AO353_20165 - tRNA-His, at 4,431,840 to 4,431,915 _20165 Position (kb) 4430 4431 4432Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4429.364 kb on + strandat 4429.428 kb on + strandat 4429.505 kb on + strandat 4429.505 kb on + strandat 4429.560 kb on - strandat 4429.560 kb on - strandat 4429.611 kb on - strandat 4429.611 kb on - strandat 4429.627 kb on + strandat 4429.627 kb on + strandat 4429.628 kb on - strandat 4429.628 kb on - strandat 4429.628 kb on - strandat 4429.659 kb on + strandat 4429.659 kb on + strandat 4429.660 kb on - strandat 4429.660 kb on - strandat 4429.677 kb on + strandat 4429.677 kb on + strandat 4429.677 kb on + strandat 4429.677 kb on + strandat 4429.677 kb on + strandat 4429.678 kb on - strandat 4429.754 kb on + strandat 4429.779 kb on - strandat 4429.795 kb on + strandat 4429.795 kb on + strandat 4429.861 kb on - strand, within AO353_20140at 4429.867 kb on + strand, within AO353_20140at 4429.941 kb on + strand, within AO353_20140at 4429.947 kb on - strand, within AO353_20140at 4429.947 kb on - strand, within AO353_20140at 4430.015 kb on + strand, within AO353_20140at 4430.036 kb on + strand, within AO353_20140at 4430.037 kb on - strand, within AO353_20140at 4430.060 kb on + strand, within AO353_20140at 4430.060 kb on + strand, within AO353_20140at 4430.094 kb on + strand, within AO353_20140at 4430.095 kb on - strand, within AO353_20140at 4430.096 kb on + strand, within AO353_20140at 4430.244 kb on - strandat 4431.620 kb on + strandat 4431.620 kb on + strandat 4431.663 kb on + strandat 4431.663 kb on + strandat 4431.666 kb on + strandat 4431.666 kb on + strandat 4431.666 kb on + strandat 4431.666 kb on + strandat 4431.666 kb on + strandat 4431.666 kb on + strandat 4431.666 kb on + strandat 4431.666 kb on + strandat 4431.666 kb on + strandat 4431.765 kb on + strandat 4431.765 kb on + strandat 4431.765 kb on + strandat 4431.765 kb on + strandat 4431.766 kb on - strandat 4431.830 kb on - strandat 4431.837 kb on - strandat 4431.837 kb on - strandat 4431.837 kb on - strandat 4431.848 kb on - strand, within AO353_20165at 4431.916 kb on + strandat 4431.916 kb on + strandat 4431.965 kb on + strandat 4431.966 kb on - strandat 4431.966 kb on - strandat 4431.966 kb on - strandat 4431.971 kb on + strandat 4431.971 kb on + strandat 4431.972 kb on - strandat 4431.972 kb on - strandat 4431.972 kb on - strandat 4431.972 kb on - strandat 4432.021 kb on + strandat 4432.021 kb on + strandat 4432.021 kb on + strandat 4432.022 kb on - strandat 4432.022 kb on - strandat 4432.022 kb on - strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.104 kb on + strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.105 kb on - strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.106 kb on + strandat 4432.107 kb on - strandat 4432.107 kb on - strandat 4432.107 kb on - strandat 4432.107 kb on - strandat 4432.107 kb on - strandat 4432.107 kb on - strandat 4432.107 kb on - strandat 4432.107 kb on - strandat 4432.107 kb on - strandat 4432.107 kb on - strandat 4432.107 kb on - strandat 4432.107 kb on - strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.108 kb on + strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.109 kb on - strandat 4432.110 kb on + strandat 4432.110 kb on + strandat 4432.110 kb on + strandat 4432.110 kb on + strandat 4432.110 kb on + strandat 4432.110 kb on + strandat 4432.110 kb on + strandat 4432.110 kb on + strandat 4432.110 kb on + strandat 4432.110 kb on + strandat 4432.110 kb on + strandat 4432.111 kb on - strandat 4432.111 kb on - strandat 4432.111 kb on - strandat 4432.111 kb on - strandat 4432.111 kb on - strandat 4432.111 kb on - strandat 4432.111 kb on - strandat 4432.111 kb on - strandat 4432.111 kb on - strandat 4432.111 kb on - strandat 4432.147 kb on + strandat 4432.147 kb on + strandat 4432.147 kb on + strandat 4432.147 kb on + strandat 4432.147 kb on + strandat 4432.148 kb on - strandat 4432.148 kb on - strandat 4432.148 kb on - strandat 4432.148 kb on - strandat 4432.148 kb on - strandat 4432.148 kb on - strandat 4432.148 kb on - strandat 4432.148 kb on - strandat 4432.148 kb on - strandat 4432.148 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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4,429,364 + +0.1
4,429,428 + +1.1
4,429,505 + -0.5
4,429,505 + +1.0
4,429,560 - +0.7
4,429,560 - -0.6
4,429,611 - +0.5
4,429,611 - -0.2
4,429,627 + -1.1
4,429,627 + -0.5
4,429,628 - -0.0
4,429,628 - -0.5
4,429,628 - +1.3
4,429,659 + -1.7
4,429,659 + +1.3
4,429,660 - -1.1
4,429,660 - +1.1
4,429,677 + -0.6
4,429,677 + +0.0
4,429,677 + -1.6
4,429,677 + +0.4
4,429,677 + -0.2
4,429,678 - +0.1
4,429,754 + +0.3
4,429,779 - +1.5
4,429,795 + +0.2
4,429,795 + +0.5
4,429,861 - AO353_20140 0.19 +0.7
4,429,867 + AO353_20140 0.21 +1.0
4,429,941 + AO353_20140 0.40 -0.0
4,429,947 - AO353_20140 0.41 +0.1
4,429,947 - AO353_20140 0.41 +1.6
4,430,015 + AO353_20140 0.59 -0.7
4,430,036 + AO353_20140 0.64 -1.6
4,430,037 - AO353_20140 0.64 -1.0
4,430,060 + AO353_20140 0.70 +0.1
4,430,060 + AO353_20140 0.70 +1.1
4,430,094 + AO353_20140 0.79 +0.0
4,430,095 - AO353_20140 0.79 -1.4
4,430,096 + AO353_20140 0.79 +0.1
4,430,244 - +0.5
4,431,620 + -0.3
4,431,620 + -0.4
4,431,663 + -1.5
4,431,663 + +0.0
4,431,666 + +1.1
4,431,666 + +0.1
4,431,666 + +0.5
4,431,666 + +0.1
4,431,666 + -1.2
4,431,666 + +1.3
4,431,666 + -1.1
4,431,666 + +0.3
4,431,666 + +1.1
4,431,765 + -0.3
4,431,765 + -0.5
4,431,765 + +0.0
4,431,765 + -0.1
4,431,766 - -1.3
4,431,830 - +0.7
4,431,837 - +0.5
4,431,837 - -0.7
4,431,837 - +0.1
4,431,848 - AO353_20165 0.11 +1.5
4,431,916 + +1.4
4,431,916 + -0.2
4,431,965 + -0.5
4,431,966 - -0.3
4,431,966 - +0.4
4,431,966 - +0.1
4,431,971 + +1.5
4,431,971 + +0.2
4,431,972 - +0.2
4,431,972 - -0.2
4,431,972 - -0.6
4,431,972 - -1.6
4,432,021 + +1.0
4,432,021 + +0.7
4,432,021 + -0.2
4,432,022 - +0.5
4,432,022 - -0.1
4,432,022 - -1.8
4,432,104 + +0.6
4,432,104 + +0.9
4,432,104 + +0.3
4,432,104 + +0.1
4,432,104 + +0.7
4,432,104 + +0.4
4,432,104 + -0.1
4,432,104 + -0.6
4,432,104 + +0.2
4,432,104 + -1.2
4,432,104 + -1.0
4,432,104 + -0.8
4,432,104 + +0.3
4,432,104 + -0.3
4,432,104 + +0.8
4,432,104 + +1.0
4,432,104 + -1.6
4,432,104 + -0.2
4,432,104 + +1.2
4,432,104 + +0.4
4,432,104 + +3.3
4,432,104 + -0.1
4,432,104 + +2.7
4,432,105 - +0.4
4,432,105 - -1.4
4,432,105 - -0.7
4,432,105 - +0.5
4,432,105 - +0.5
4,432,105 - -1.5
4,432,105 - +0.6
4,432,105 - +0.9
4,432,105 - -0.5
4,432,105 - -1.0
4,432,105 - +1.4
4,432,105 - +1.6
4,432,105 - -1.9
4,432,105 - -0.2
4,432,105 - +0.1
4,432,105 - +1.1
4,432,105 - +2.6
4,432,105 - -1.0
4,432,105 - +1.5
4,432,105 - +0.8
4,432,106 + -1.6
4,432,106 + +0.7
4,432,106 + +0.3
4,432,106 + +0.5
4,432,106 + -0.2
4,432,106 + -0.2
4,432,106 + -1.1
4,432,106 + -0.4
4,432,106 + +0.9
4,432,106 + +1.8
4,432,106 + -0.2
4,432,106 + +0.1
4,432,106 + +0.1
4,432,106 + +0.0
4,432,106 + +0.1
4,432,106 + +0.3
4,432,106 + +2.0
4,432,106 + -0.1
4,432,106 + -0.0
4,432,106 + +1.4
4,432,106 + -1.0
4,432,106 + +1.1
4,432,106 + -0.5
4,432,106 + +0.4
4,432,106 + +0.2
4,432,107 - +0.1
4,432,107 - +0.1
4,432,107 - -0.7
4,432,107 - +2.9
4,432,107 - +0.8
4,432,107 - -0.4
4,432,107 - +0.5
4,432,107 - +0.7
4,432,107 - +0.9
4,432,107 - +1.1
4,432,107 - -1.0
4,432,107 - -0.6
4,432,108 + -0.5
4,432,108 + -1.0
4,432,108 + +1.4
4,432,108 + +1.0
4,432,108 + +2.9
4,432,108 + -0.9
4,432,108 + -0.2
4,432,108 + -0.2
4,432,108 + -0.7
4,432,108 + -0.2
4,432,108 + -0.2
4,432,108 + +1.3
4,432,108 + -1.2
4,432,108 + +1.6
4,432,108 + +1.1
4,432,108 + -0.5
4,432,108 + -0.0
4,432,108 + -0.2
4,432,108 + -0.5
4,432,108 + -0.2
4,432,108 + -0.5
4,432,108 + -2.0
4,432,108 + +0.9
4,432,108 + -1.0
4,432,109 - +1.1
4,432,109 - +1.1
4,432,109 - -0.4
4,432,109 - -0.2
4,432,109 - -1.0
4,432,109 - -0.3
4,432,109 - +0.1
4,432,109 - -0.5
4,432,109 - -0.7
4,432,109 - -1.0
4,432,109 - -0.0
4,432,109 - +0.3
4,432,109 - -0.9
4,432,109 - -2.0
4,432,109 - +0.1
4,432,109 - -0.8
4,432,109 - -1.5
4,432,109 - +0.8
4,432,109 - +1.9
4,432,109 - +1.1
4,432,109 - -0.2
4,432,109 - -1.2
4,432,109 - -0.7
4,432,109 - +0.1
4,432,109 - +2.0
4,432,109 - -1.0
4,432,109 - +0.5
4,432,109 - -0.9
4,432,110 + -1.0
4,432,110 + +0.5
4,432,110 + -0.4
4,432,110 + +0.8
4,432,110 + -0.6
4,432,110 + -0.9
4,432,110 + -0.6
4,432,110 + +0.7
4,432,110 + -0.3
4,432,110 + +1.0
4,432,110 + +1.7
4,432,111 - +0.3
4,432,111 - -1.3
4,432,111 - +0.2
4,432,111 - -0.1
4,432,111 - +0.1
4,432,111 - +2.0
4,432,111 - +0.9
4,432,111 - -0.7
4,432,111 - -0.2
4,432,111 - +2.3
4,432,147 + +0.1
4,432,147 + +0.5
4,432,147 + -1.1
4,432,147 + +0.9
4,432,147 + -1.1
4,432,148 - +0.8
4,432,148 - -1.0
4,432,148 - +0.0
4,432,148 - +0.9
4,432,148 - -2.3
4,432,148 - -2.2
4,432,148 - -0.0
4,432,148 - +1.3
4,432,148 - -0.6
4,432,148 - +2.1

Or see this region's nucleotide sequence