Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_15250

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_15240 and AO353_15245 are separated by 253 nucleotidesAO353_15245 and AO353_15250 overlap by 1 nucleotidesAO353_15250 and AO353_15255 overlap by 1 nucleotidesAO353_15255 and AO353_15260 are separated by 150 nucleotides AO353_15240: AO353_15240 - 30S ribosomal protein S9, at 3,369,269 to 3,369,661 _15240 AO353_15245: AO353_15245 - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 3,369,915 to 3,370,508 _15245 AO353_15250: AO353_15250 - cytochrome B, at 3,370,508 to 3,371,719 _15250 AO353_15255: AO353_15255 - cytochrome C, at 3,371,719 to 3,372,501 _15255 AO353_15260: AO353_15260 - stringent starvation protein A, at 3,372,652 to 3,373,269 _15260 Position (kb) 3370 3371 3372Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3369.720 kb on + strandat 3369.728 kb on + strandat 3369.755 kb on - strandat 3369.763 kb on + strandat 3369.765 kb on + strandat 3369.765 kb on + strandat 3369.765 kb on + strandat 3369.765 kb on + strandat 3369.768 kb on + strandat 3369.768 kb on + strandat 3369.768 kb on + strandat 3369.768 kb on + strandat 3369.768 kb on + strandat 3369.769 kb on - strandat 3369.769 kb on - strandat 3369.769 kb on - strandat 3369.796 kb on + strandat 3369.796 kb on + strandat 3369.796 kb on + strandat 3369.797 kb on - strandat 3369.800 kb on + strandat 3369.800 kb on + strandat 3369.800 kb on + strandat 3369.800 kb on + strandat 3369.800 kb on + strandat 3369.800 kb on + strandat 3369.800 kb on + strandat 3369.800 kb on + strandat 3369.800 kb on + strandat 3369.800 kb on + strandat 3369.801 kb on - strandat 3369.801 kb on - strandat 3369.801 kb on - strandat 3369.801 kb on - strandat 3369.862 kb on + strandat 3369.869 kb on + strandat 3369.869 kb on + strandat 3369.869 kb on + strandat 3369.869 kb on + strandat 3369.869 kb on + strandat 3369.870 kb on - strandat 3370.228 kb on - strand, within AO353_15245at 3370.228 kb on - strand, within AO353_15245at 3370.363 kb on - strand, within AO353_15245at 3370.552 kb on + strandat 3370.580 kb on + strandat 3370.683 kb on - strand, within AO353_15250at 3370.683 kb on - strand, within AO353_15250at 3370.683 kb on - strand, within AO353_15250at 3370.722 kb on - strand, within AO353_15250at 3370.722 kb on - strand, within AO353_15250at 3370.722 kb on - strand, within AO353_15250at 3370.810 kb on + strand, within AO353_15250at 3370.810 kb on + strand, within AO353_15250at 3370.811 kb on - strand, within AO353_15250at 3370.811 kb on - strand, within AO353_15250at 3371.028 kb on - strand, within AO353_15250at 3371.226 kb on - strand, within AO353_15250at 3371.608 kb on + strandat 3371.669 kb on + strandat 3371.738 kb on + strandat 3372.075 kb on + strand, within AO353_15255at 3372.109 kb on + strand, within AO353_15255at 3372.424 kb on + strandat 3372.424 kb on + strandat 3372.424 kb on + strandat 3372.425 kb on - strandat 3372.436 kb on + strandat 3372.502 kb on + strandat 3372.503 kb on - strandat 3372.503 kb on - strandat 3372.514 kb on + strandat 3372.514 kb on + strandat 3372.679 kb on + strandat 3372.680 kb on - strandat 3372.700 kb on + strandat 3372.717 kb on + strand, within AO353_15260

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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3,369,720 + +0.5
3,369,728 + -1.3
3,369,755 - +0.2
3,369,763 + +1.5
3,369,765 + +1.3
3,369,765 + -0.0
3,369,765 + -0.1
3,369,765 + +1.1
3,369,768 + +0.5
3,369,768 + +0.9
3,369,768 + +0.8
3,369,768 + +1.9
3,369,768 + +1.1
3,369,769 - +0.7
3,369,769 - +0.2
3,369,769 - -0.8
3,369,796 + +1.9
3,369,796 + -0.6
3,369,796 + +0.5
3,369,797 - -1.1
3,369,800 + -1.0
3,369,800 + +0.7
3,369,800 + +1.4
3,369,800 + +0.8
3,369,800 + -0.1
3,369,800 + -1.7
3,369,800 + +0.4
3,369,800 + -0.5
3,369,800 + +2.5
3,369,800 + +0.9
3,369,801 - -1.2
3,369,801 - -1.8
3,369,801 - -0.8
3,369,801 - +0.8
3,369,862 + +1.7
3,369,869 + +0.7
3,369,869 + +0.1
3,369,869 + -0.7
3,369,869 + -0.1
3,369,869 + +0.5
3,369,870 - -0.4
3,370,228 - AO353_15245 0.53 +1.5
3,370,228 - AO353_15245 0.53 -0.4
3,370,363 - AO353_15245 0.75 -0.1
3,370,552 + -0.5
3,370,580 + +0.7
3,370,683 - AO353_15250 0.14 -0.8
3,370,683 - AO353_15250 0.14 +0.9
3,370,683 - AO353_15250 0.14 -0.1
3,370,722 - AO353_15250 0.18 -1.8
3,370,722 - AO353_15250 0.18 -2.0
3,370,722 - AO353_15250 0.18 +0.9
3,370,810 + AO353_15250 0.25 -1.3
3,370,810 + AO353_15250 0.25 -0.1
3,370,811 - AO353_15250 0.25 +1.5
3,370,811 - AO353_15250 0.25 -1.4
3,371,028 - AO353_15250 0.43 -0.7
3,371,226 - AO353_15250 0.59 +1.9
3,371,608 + -0.7
3,371,669 + -0.5
3,371,738 + +0.5
3,372,075 + AO353_15255 0.45 -0.7
3,372,109 + AO353_15255 0.50 -0.3
3,372,424 + -0.3
3,372,424 + -1.0
3,372,424 + +2.0
3,372,425 - +0.2
3,372,436 + -0.3
3,372,502 + -0.2
3,372,503 - -0.1
3,372,503 - -1.5
3,372,514 + -0.1
3,372,514 + -1.0
3,372,679 + -2.0
3,372,680 - -1.0
3,372,700 + -0.4
3,372,717 + AO353_15260 0.11 -2.8

Or see this region's nucleotide sequence